Carg27685 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27685
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DUF4228 domain protein
Location	Carg_Chr11: 4478409 .. 4479023 (+)
RNA-Seq Expression	Carg27685
Synteny	Carg27685

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAATGCCGCCGCCTCTCCATGTTACGTATCAATTTCCGTCTCCCGCCGCCGCTCCTCCGCCGTCAAACTCGTCTTCTCCGACGGCTTTACTAGACTCCTCCCCGGTAAGCACCACATGGCCGGTGAAATCATGTTCCGATTCCCAAACACGATGATCTGTCACGCCGATTCCTTCTTCATCGGCCACACCATCCCCTCCTTAGGCACCGACGACAAACTCATCGCCGGTGAGACCTACTTCATCCTCCCGCTCGATCTATTCGCCTCCTTCGATGTTCTCACCACATCGTCGCTCGCAGCCCTCGGCGCTCAAAAGGCAAAGACCGTGAAATTTTCCGGTCCTTGTCCGTTTGAGTATGTTCGAAACGCAAATGGAAGAGTTCTGATTAAGGTCGCGCCGGAGTTCATTCTTCGCCTAATTTCCCCGGCGGACGACGGCGGAGGAGGTCAATTTCTGTGCAGTACGCCGGAGTTGAAGAAACATTACGATCAACTCGTCGGATCGAAGGGCCCGGTTTGGTCCCCCAAATTGGAGAGCATTTCGGAGTATGAAATTAGGCATTCACCCTACAAATTTGTAGGGTTTAAACTCAAACAGAAAGAAGGCTAA

mRNA sequence

ATGGGCAATGCCGCCGCCTCTCCATGTTACGTATCAATTTCCGTCTCCCGCCGCCGCTCCTCCGCCGTCAAACTCGTCTTCTCCGACGGCTTTACTAGACTCCTCCCCGGTAAGCACCACATGGCCGGTGAAATCATGTTCCGATTCCCAAACACGATGATCTGTCACGCCGATTCCTTCTTCATCGGCCACACCATCCCCTCCTTAGGCACCGACGACAAACTCATCGCCGGTGAGACCTACTTCATCCTCCCGCTCGATCTATTCGCCTCCTTCGATGTTCTCACCACATCGTCGCTCGCAGCCCTCGGCGCTCAAAAGGCAAAGACCGTGAAATTTTCCGGTCCTTGTCCGTTTGAGTATGTTCGAAACGCAAATGGAAGAGTTCTGATTAAGGTCGCGCCGGAGTTCATTCTTCGCCTAATTTCCCCGGCGGACGACGGCGGAGGAGGTCAATTTCTGTGCAGTACGCCGGAGTTGAAGAAACATTACGATCAACTCGTCGGATCGAAGGGCCCGGTTTGGTCCCCCAAATTGGAGAGCATTTCGGAGTATGAAATTAGGCATTCACCCTACAAATTTGTAGGGTTTAAACTCAAACAGAAAGAAGGCTAA

Coding sequence (CDS)

ATGGGCAATGCCGCCGCCTCTCCATGTTACGTATCAATTTCCGTCTCCCGCCGCCGCTCCTCCGCCGTCAAACTCGTCTTCTCCGACGGCTTTACTAGACTCCTCCCCGGTAAGCACCACATGGCCGGTGAAATCATGTTCCGATTCCCAAACACGATGATCTGTCACGCCGATTCCTTCTTCATCGGCCACACCATCCCCTCCTTAGGCACCGACGACAAACTCATCGCCGGTGAGACCTACTTCATCCTCCCGCTCGATCTATTCGCCTCCTTCGATGTTCTCACCACATCGTCGCTCGCAGCCCTCGGCGCTCAAAAGGCAAAGACCGTGAAATTTTCCGGTCCTTGTCCGTTTGAGTATGTTCGAAACGCAAATGGAAGAGTTCTGATTAAGGTCGCGCCGGAGTTCATTCTTCGCCTAATTTCCCCGGCGGACGACGGCGGAGGAGGTCAATTTCTGTGCAGTACGCCGGAGTTGAAGAAACATTACGATCAACTCGTCGGATCGAAGGGCCCGGTTTGGTCCCCCAAATTGGAGAGCATTTCGGAGTATGAAATTAGGCATTCACCCTACAAATTTGTAGGGTTTAAACTCAAACAGAAAGAAGGCTAA

Protein sequence

MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSFFIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFEYVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLESISEYEIRHSPYKFVGFKLKQKEG

Homology

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BLAST of Carg27685 vs. NCBI nr
Match: XP_022927436.1 (uncharacterized protein LOC111434260 [Cucurbita moschata] >KAG7022128.1 hypothetical protein SDJN02_15857, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 419.1 bits (1076), Expect = 2.2e-113
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60
           MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF
Sbjct: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60

Query: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120
           FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE
Sbjct: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120

Query: 121 YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE 180
           YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE
Sbjct: 121 YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE 180

Query: 181 SISEYEIRHSPYKFVGFKLKQKEG 205
           SISEYEIRHSPYKFVGFKLKQKEG
Sbjct: 181 SISEYEIRHSPYKFVGFKLKQKEG 204

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BLAST of Carg27685 vs. NCBI nr
Match: XP_023003160.1 (uncharacterized protein LOC111496859 [Cucurbita maxima])

HSP 1 Score: 402.5 bits (1033), Expect = 2.1e-108
Identity = 197/206 (95.63%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60
           MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF
Sbjct: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60

Query: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120
           FIGHT+PSLGTDDKLI GETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE
Sbjct: 61  FIGHTLPSLGTDDKLIPGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120

Query: 121 YVRNANGRVLIKVAPEFILRLISPA--DDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPK 180
           YVRNANGRVLIKVAPEFILRLISPA  D  GGGQFLCSTPELKKHYDQLVG+KGPVW+PK
Sbjct: 121 YVRNANGRVLIKVAPEFILRLISPAVSDGSGGGQFLCSTPELKKHYDQLVGTKGPVWAPK 180

Query: 181 LESISEYEIRHSPYKFVGFKLKQKEG 205
           LESISEY+IRHSPYKFVGFKLKQKEG
Sbjct: 181 LESISEYKIRHSPYKFVGFKLKQKEG 206

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BLAST of Carg27685 vs. NCBI nr
Match: XP_023530354.1 (uncharacterized protein LOC111792952 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.4 bits (1030), Expect = 4.8e-108
Identity = 197/206 (95.63%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60
           MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHH+AGEIMFRFPNTMICHADSF
Sbjct: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHIAGEIMFRFPNTMICHADSF 60

Query: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120
           FIGHT+PSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGA+KAKTVKFSGPCPFE
Sbjct: 61  FIGHTLPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAKKAKTVKFSGPCPFE 120

Query: 121 YVRNANGRVLIKVAPEFILRLISP--ADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPK 180
           YVRNANGRVLIKVAPEFILRLISP  AD GGGGQFLCSTPELKKHYDQLVGSKGPVW+PK
Sbjct: 121 YVRNANGRVLIKVAPEFILRLISPVGADGGGGGQFLCSTPELKKHYDQLVGSKGPVWAPK 180

Query: 181 LESISEYEIRHSPYKFVGFKLKQKEG 205
           LESISEY+IR SPYKFVGFKLKQKEG
Sbjct: 181 LESISEYKIRDSPYKFVGFKLKQKEG 206

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BLAST of Carg27685 vs. NCBI nr
Match: KAG6588218.1 (Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.5 bits (968), Expect = 7.4e-101
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60
           MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF
Sbjct: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60

Query: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120
           FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE
Sbjct: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120

Query: 121 YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE 180
           YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE
Sbjct: 121 YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE 180

Query: 181 SISE 185
           SISE
Sbjct: 181 SISE 184

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BLAST of Carg27685 vs. NCBI nr
Match: KAG7022114.1 (hypothetical protein SDJN02_15843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.4 bits (921), Expect = 2.1e-95
Identity = 182/203 (89.66%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 7   SPCYVSISVSRRRSSAVKLVFSDGF-----TRLLPGKHHMAGEIMFRFPNTMICHADSFF 66
           SP   SIS  + R S  K V   GF       LLPGKHHMAGEIMFRFPNTMICHADSFF
Sbjct: 175 SPKLESISEYKIRYSPCKFV---GFKVKQKEGLLPGKHHMAGEIMFRFPNTMICHADSFF 234

Query: 67  IGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFEY 126
           IGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFEY
Sbjct: 235 IGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFEY 294

Query: 127 VRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLES 186
           VRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLES
Sbjct: 295 VRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLES 354

Query: 187 ISEYEIRHSPYKFVGFKLKQKEG 205
           ISEYEIRHSPYKFVGFKLKQKEG
Sbjct: 355 ISEYEIRHSPYKFVGFKLKQKEG 374

[Close]

BLAST of Carg27685 vs. ExPASy TrEMBL
Match: A0A6J1EHN5 (uncharacterized protein LOC111434260 OS=Cucurbita moschata OX=3662 GN=LOC111434260 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.1e-113
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60
           MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF
Sbjct: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60

Query: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120
           FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE
Sbjct: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120

Query: 121 YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE 180
           YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE
Sbjct: 121 YVRNANGRVLIKVAPEFILRLISPADDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPKLE 180

Query: 181 SISEYEIRHSPYKFVGFKLKQKEG 205
           SISEYEIRHSPYKFVGFKLKQKEG
Sbjct: 181 SISEYEIRHSPYKFVGFKLKQKEG 204

[Close]

BLAST of Carg27685 vs. ExPASy TrEMBL
Match: A0A6J1KR03 (uncharacterized protein LOC111496859 OS=Cucurbita maxima OX=3661 GN=LOC111496859 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.0e-108
Identity = 197/206 (95.63%), Postives = 201/206 (97.57%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60
           MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF
Sbjct: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSF 60

Query: 61  FIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120
           FIGHT+PSLGTDDKLI GETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE
Sbjct: 61  FIGHTLPSLGTDDKLIPGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCPFE 120

Query: 121 YVRNANGRVLIKVAPEFILRLISPA--DDGGGGQFLCSTPELKKHYDQLVGSKGPVWSPK 180
           YVRNANGRVLIKVAPEFILRLISPA  D  GGGQFLCSTPELKKHYDQLVG+KGPVW+PK
Sbjct: 121 YVRNANGRVLIKVAPEFILRLISPAVSDGSGGGQFLCSTPELKKHYDQLVGTKGPVWAPK 180

Query: 181 LESISEYEIRHSPYKFVGFKLKQKEG 205
           LESISEY+IRHSPYKFVGFKLKQKEG
Sbjct: 181 LESISEYKIRHSPYKFVGFKLKQKEG 206

[Close]

BLAST of Carg27685 vs. ExPASy TrEMBL
Match: A0A5A7UN34 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00360 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.5e-78
Identity = 152/213 (71.36%), Postives = 171/213 (80.28%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVS--RRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHAD 60
           MGN A SPC +SIS+S  R R SAVKLVF+DG T+ L G HH AGEIMF+FP+ M+CHA+
Sbjct: 1   MGN-AVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAE 60

Query: 61  SFFIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCP 120
           SFFIGH IPSL  DD+L+ GETY +LP+D FAS DVL+TSSLA +GA      KFSGPCP
Sbjct: 61  SFFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCP 120

Query: 121 FEYVRNANGRVLIKVAPEFILRLISPA------DDGGGGQFLCSTPELKKHYDQLVGS-K 180
           FEYVR  NGRVLIKV PEFI+RLISPA        GGGG FLCSTPELKKHYDQLVGS K
Sbjct: 121 FEYVRGTNGRVLIKVMPEFIVRLISPAAMDGGESGGGGGGFLCSTPELKKHYDQLVGSTK 180

Query: 181 GPVWSPKLESISEYEIRHSPYKFVGFKLKQKEG 205
           G VWSPKLE+ISEY+IR+SP +FVGFKLKQKEG
Sbjct: 181 GQVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Carg27685 vs. ExPASy TrEMBL
Match: A0A1S3BP11 (uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.5e-78
Identity = 152/213 (71.36%), Postives = 171/213 (80.28%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVS--RRRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHAD 60
           MGN A SPC +SIS+S  R R SAVKLVF+DG T+ L G HH AGEIMF+FP+ M+CHA+
Sbjct: 1   MGN-AVSPCLISISISLRRHRPSAVKLVFTDGPTKFLVGNHHFAGEIMFQFPDMMVCHAE 60

Query: 61  SFFIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCP 120
           SFFIGH IPSL  DD+L+ GETY +LP+D FAS DVL+TSSLA +GA      KFSGPCP
Sbjct: 61  SFFIGHPIPSLSIDDELLVGETYLVLPIDRFASVDVLSTSSLAMIGAGNMSAEKFSGPCP 120

Query: 121 FEYVRNANGRVLIKVAPEFILRLISPA------DDGGGGQFLCSTPELKKHYDQLVGS-K 180
           FEYVR  NGRVLIKV PEFI+RLISPA        GGGG FLCSTPELKKHYDQLVGS K
Sbjct: 121 FEYVRGTNGRVLIKVMPEFIVRLISPAAVDGGESGGGGGGFLCSTPELKKHYDQLVGSTK 180

Query: 181 GPVWSPKLESISEYEIRHSPYKFVGFKLKQKEG 205
           G VWSPKLE+ISEY+IR+SP +FVGFKLKQKEG
Sbjct: 181 GQVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Carg27685 vs. ExPASy TrEMBL
Match: A0A0A0LZV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 152/213 (71.36%), Postives = 172/213 (80.75%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSR--RRSSAVKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHAD 60
           MGN A SPC +SIS+SR  RR S VKLVF++G T+ L G HH AGEIMF+FP+ M+CHA+
Sbjct: 1   MGN-AVSPCLLSISISRCHRRPSTVKLVFTNGPTKFLAGDHHFAGEIMFQFPDMMVCHAE 60

Query: 61  SFFIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKFSGPCP 120
           SFFIGH IPSL  DD+LIAGETY ILP+D FAS DVL+TSSLA +GA      KFSGPCP
Sbjct: 61  SFFIGHPIPSLSIDDQLIAGETYLILPIDRFASVDVLSTSSLATIGAGNMSVEKFSGPCP 120

Query: 121 FEYVRNANGRVLIKVAPEFILRLISPA------DDGGGGQFLCSTPELKKHYDQLVGS-K 180
           FEYVR  NG+VLIKV PEFI+RLIS A       +GGGG FLCSTPELKKHYDQLVGS K
Sbjct: 121 FEYVRGTNGKVLIKVMPEFIVRLISQAAMDGGESEGGGGGFLCSTPELKKHYDQLVGSTK 180

Query: 181 GPVWSPKLESISEYEIRHSPYKFVGFKLKQKEG 205
           G VWSPKLE+ISEY+IR+SP +FVGFKLKQKEG
Sbjct: 181 GQVWSPKLETISEYKIRYSPCRFVGFKLKQKEG 212

[Close]

BLAST of Carg27685 vs. TAIR 10
Match: AT5G12340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 177.9 bits (450), Expect = 8.0e-45
Identity = 99/222 (44.59%), Postives = 136/222 (61.26%), Query Frame = 0


Query: 1   MGNAAASPCYVSISVSRRRSSAVKLVFSDGF-TRLLPG-KHHMAGEIMFRFPNTMICHAD 60
           MG +  + C+    + RRR   V LVF +   T+ L G K H+AGEIMF FP+ ++CHAD
Sbjct: 1   MGRSLINSCF---PIIRRRQGIVTLVFFEHVSTKTLCGFKKHVAGEIMFEFPDQIVCHAD 60

Query: 61  SFFIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGA------QKAKTVK 120
           SF+IG  IP+L  DD LI G+TYF+LP++ F  + +LTTS L+   +           + 
Sbjct: 61  SFYIGRQIPALAMDDYLIPGQTYFVLPIERF-QYKILTTSCLSIFNSNLENVRSNTPPLN 120

Query: 121 F---SGPCPFEYVRNANGRVLIKVAPEFILRLI--------SPADDGGGGQFLCSTPELK 180
           F   S P PFEY +  NG++LIKV+PEFI+ LI          A   G    +C++PELK
Sbjct: 121 FTAPSSPPPFEYSQGPNGKILIKVSPEFIISLICKNRNIREEEATSCGENSAICNSPELK 180

Query: 181 KHYDQLVGSKGPVWSPKLESISEYEIRHSPYKFVGFKLKQKE 204
           K YDQLVG++  +WSP L++ISE++IR SP +F G   KQ E
Sbjct: 181 KQYDQLVGTREHMWSPNLQTISEHKIRVSPLRFFGLNRKQDE 218

[Close]

BLAST of Carg27685 vs. TAIR 10
Match: AT1G28190.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-15
Identity = 59/179 (32.96%), Postives = 86/179 (48.04%), Query Frame = 0


Query: 23  VKLVFSDGFTRLLPGKHHMAGEIMFRFPNTMICHADSFFIGHTIPSLGTDDKLIAGETYF 82
           +KLV SDG  ++   +  +  E+   FP   IC +D  +IG   P L   + L  G  YF
Sbjct: 39  IKLVRSDGSLQVY-DRPVVVSELTKDFPKHKICRSDLLYIGQKTPVLSETETLKLGLNYF 98

Query: 83  ILPLDLF---ASFDVLTTSSLAALGAQKAKTVKFSGPCPFEYVRNANG-RVLIKVAPEFI 142
           +LP D F    SF  + T      G    K  +   P PF   +   G R+ I+V+ EF+
Sbjct: 99  LLPSDFFKNDLSFLTIATLKTPQNGGVLVKKTQ-QQPQPFLIQKGEKGERLRIRVSEEFV 158

Query: 143 LRLI----------SPADDGGGGQ---FLCSTPELKKHYDQLVGSKGPVWSPKLESISE 185
             L+             ++ GGG+    +C+T +LKK Y QLVG +   W PKLE+I+E
Sbjct: 159 SELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDYVQLVGLRR--WKPKLETITE 213

[Close]

BLAST of Carg27685 vs. TAIR 10
Match: AT1G21010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-04
Identity = 35/155 (22.58%), Postives = 69/155 (44.52%), Query Frame = 0


Query: 54  ICHADSFFIGHTIPSLGTDDKLIAGETYFILPLDLFASFDVLTTSSLAALGAQKAKTVKF 113
           IC +DS +    IP++ +++ L A + YF+LP+    S   LT S +AAL  + +  ++ 
Sbjct: 61  ICDSDSLYYDDFIPAIKSEEPLQADQIYFVLPISKRQS--RLTASDMAALAVKASVAIQN 120

Query: 114 SGPCPFEYVRNANGRVLIKVAPEFILRLISPADDGGGGQ--------FLCSTPELKKHYD 173
           S        + +  R  ++++P  +L   + + +G G +        F+  T  +K    
Sbjct: 121 S------VKKESRRRKKVRISPVMMLTGSNDSVNGNGSETTVKKGRPFVSKTAPVK---- 180

Query: 174 QLVGSKGPVWSPKLESISEYEIRHSPYKFVGFKLK 201
               S G   S  + ++  Y  + +      F+LK
Sbjct: 181 ---ASSGINRSGSVRNLRRYTSKRAKLAVRSFRLK 200

The following BLAST results are available for this feature:

BLAST of Carg27685 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927436.1	2.2e-113	100.00	uncharacterized protein LOC111434260 [Cucurbita moschata] >KAG7022128.1 hypothet...	[more]
XP_023003160.1	2.1e-108	95.63	uncharacterized protein LOC111496859 [Cucurbita maxima]	[more]
XP_023530354.1	4.8e-108	95.63	uncharacterized protein LOC111792952 [Cucurbita pepo subsp. pepo]	[more]
KAG6588218.1	7.4e-101	100.00	Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp...	[more]
KAG7022114.1	2.1e-95	89.66	hypothetical protein SDJN02_15843, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg27685 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27685 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHN5	1.1e-113	100.00	uncharacterized protein LOC111434260 OS=Cucurbita moschata OX=3662 GN=LOC1114342...	[more]
A0A6J1KR03	1.0e-108	95.63	uncharacterized protein LOC111496859 OS=Cucurbita maxima OX=3661 GN=LOC111496859...	[more]
A0A5A7UN34	2.5e-78	71.36	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3BP11	2.5e-78	71.36	uncharacterized protein LOC103491983 OS=Cucumis melo OX=3656 GN=LOC103491983 PE=...	[more]
A0A0A0LZV5	1.2e-77	71.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627480 PE=4 SV=1	[more]

BLAST of Carg27685 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12340.1	8.0e-45	44.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G28190.1	5.1e-15	32.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G21010.1	2.4e-04	22.58	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..184 e-value: 7.4E-26 score: 91.7
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 1..189
None	No IPR available	PANTHER	PTHR33052:SF4	DUF4228 DOMAIN PROTEIN	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27685-RA	Carg27685-RA	mRNA