Carg27610 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27610
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein YIP
Location	Carg_Chr10: 7543727 .. 7549631 (-)
RNA-Seq Expression	Carg27610
Synteny	Carg27610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGATACTTCTCTGAGAAGGGAGAAGAAGAAGCAAGAATACGCAGAAGATGATGTCCGGTGGTAACTACACGACTATAGATAACCAAAATGTTTCAGGATCTGTTCCCGTAAGCTTCTCGCCTCTTTAGCTTTCTTGTAATTTTTTTTGTTTGTTTGTTTTGGAGAGAAGCTATCGAATCTGCAGCATTTTTTTTTTAATCTGATCTACTCGGTTGATTTCTCCGGTTTCTGTGTATTTTGATTTCCAGGCTGTTCCAGATCAGGGACAGATAGCCGTTAAATTCACTGGTAAGTAGTTTCCTTTTTCTGATAACGTTTTATGGATTCTAAGAAGGTATGGGCGAAGAAATGAAAGGTTTATGAGATTGAGCGTTAAATTTTGCGTGTGCAAGGGATTAAGATCACAAGCAACTAGAAAATCGTTCGTGTTGAGTTTTTCTATTATTATTTTTATTTCCGGTTCGTTTTCTTACCGGACAAATGTAGGTAGGAAAAAGAATCAAAGCTTCTTATAGGAGGTTTATGCTCTTAAGGATCCAAAATTGACGTATTATTGGAATGAAATTTGAGGACCAAGTGGTTGAACTTAAGCATGGCAGACTGGCCTATGTTAGATCTAACTATATATAGCGAATTCAGTATGGAAAGGAAAAGAGGTTCAATATTAATTTTCACTGGGCTAGAAGCACCATTGAATGAAATTTTGACTAACATCTTATATTGCAGGAATGATATCGATGTAAATACTGAGTGAAATTTAGATTAATCATAAATTATGAGGATTGAAATCAAGTATTAGAGTTTCATTTTGATCCACGGACTGTTGTTTTTTTTGGCTATTTGTTGCAAGATAATAACTGACTGATTTGTTGTTGTAGAGTCAAATCTTCAAACGTTTCCTCCTTCCGGAACTCAAGGAAAGATCGCTGGTGGATTCCAGCCACCTCGTGATGCTGATGGTATTTAAAGATCTTTCTTTAGCTTTTTATCTCAACATTGTTTTTTAACTTATTCTAATTTGATATGAGAAGCTGATTCTACTGTTAAATCTCTCAAGTTGTTTCACTGATCAAGACAAATATAAGATGCTATCTTCTAGACTTAGATTGAGAGACACTAAAATTTTTAGGACTTGTCCAACGAACTCTCCCCTGTTGTGTCTAAAAGTATTTTTAGATAATGAACTTACCACTGTATTATTCGTTTCGTCTTTTGAGACTTCTTCAACTATTGACTTTTCCTTTATATTCTTTATGTTAAGTTTATGCTTCATTTAGCATGGTGGTCAGTTTTAGTTGAGAAGTTCATGATATGATCCCATTGAGATGTATATCTTTCATTTATTTCTTCGTGTTAATTAGTAATTCATTGCATTATATTTCCTGAAACTTCATTTCGTTATTTGTAATAGGTGGTTCTTCTATTTAAGAAACCTTATTCCACGCATAGAAAATAGGACAAAATTATAATTTTCTCTTGATTTTTTGAGCATGGTATCGTAGTTGAAAACCCTAAATCCCTAGAATTAGCTCCAACTCTAGCCGTCGCTACTGTTGTTCATCCGCATCTCCCATGCCACTTTCAGATGAGTTTGTGGGTGCTTGAATATGCGACTGCTCACTCTGTGCACGACCGTGTGCATTCATTTCTATCACGTCTGTATGCATTTCGACTGTCACATCTGTACCGTTAATAAGTCATGCCGCCATCTTCGTGTTGTCTGCTTCGTCGTTTGGCCTTTTTTTTTTTTTTTTTTCTTGCGTGTTGGCTACTATTTCTTTGGGGTTTTTGGTTTTTTCTACTTTATTGTTTGTTTTTGTTTGACCATTTTGGTATATGGTTTTGGTTTAGTTTCAAATTGGTAACTTAAGCAACTTTGATACGAAAGTAAGTCATCTATTGCTAAATACTCAGATAATTGCATCCAATTCAATAGTCCTACTGTCCAAATCACCTCCGTTTGGTTTAATGTGGTTAACTTTCTTTACTAGCAACAAGAGCGCACCTGCCAAAGATGGTCCTTCATTTGACAAGTGATATGTTGAAATTTCCATGGTGGAAGACATTAGTTGTTTTGATATCTGTTACTATGAAATAAATATGGGATGGTTTGACGTAGATGTATTTAGATTTGCGCATTCTATCAATCAAGAGAGTGAAAAGTAGGAAGAGAGTGAGGAAGCTTGGGTGAGACATGAAAATGAAGGGGGAAAAAGTATTATTGATCACCTATTACCTATCAAGACTAGCAACCTCTTTTACTCTTTCAGTGATCACTCCTAGGTTGTAATGTACATGAACCAAAGATGTCATTAGCTCTCCCATCACTAAAGATCATATCTCCTTTCCAATGGTTCACGATATCAAATCTGATGTTAATATGAGCCGTGAGGAATTTAAAGCACATTGTTGATATAGAGATTGATGAATTTTCTTTTGAAAACTCTTTTGCAGAAACATTAGTATTTTTTCAGCTGTTGATAAAAGGAGTTCAGTTGAAGTTTTGCAATCAGCAGTATCATTAGCCAAATATCCTTCAATTCCTCCAAATTTATTTGCTTAATTGAGGTTTGTGGATTACAGATGTAAGAAACCCCTCCTTAGTCACCACAAACTAAGATCTAATTGTGTTTCACTCATCCGTATTTGCAAAAAGGATTGTTCTTAGATGTCAGATCTCTTCCTTCCTCTGCCAATCTTTTTTGCTTGGAGCCGAGTGTTCTTGGCCTTTATTTCGATGTTTTGATTGGATAATTATTTTAGGCTCTTTGTTGAAGAGGATTTAGTATTAGTTGGATTATTATTTATATCCTTTTTTGTTGGTCGACTTCAATCGGTTAGCTCAGCTCTTTGGCTTGGTTTTCTCACCCTTGGGGGATATCCAAACTTAAAAGATAATTTTTGGGACACTTCTCTTCTTCCTAACGTCATAATGAGAATAGAGGATCTGTTTCTTTGAGGGAGAAACACTACAAAGTGATCTAACTGGTTGAGATCATAAACTTCAAGTTTATGTTAAAAGGGCATTGAATCAAAAGAATCAGAACTAGGCAGTAGATTTATCACATTACCATTCTAATGCTTTATCGAATGGTTCTGTAGATTAAGGTCATAGATCCTTTATTGTCATTTCTTCATCTAGCCATAACAAATTTATTTGATGTTTCTTATCTTGATATTCTCATAGCTCATATGACAGATACTAGTAATTGTATAAAATACCCAAATGCAAACTATCTTTCTTACCATAGTCATAGAACCTAAACTTTTAGGATAAAACCAACCTATTTGTTTGAAGGAATATACAAGGCTCTAAATGATTGAATCAGAAATTAACCGTCAGAGAGATGAATTGATAAGGAATCACTCCAATGAAAAGTAAGATTCAAATTACCCTTGTTGATCAAATATTCAAGCAAGAGTAGTCATGCCAAGTCTGAATAATACTAAATATGTAACCTAAATTACATAGAATTGCAATAAAATATTTAGCCTTTAGCTAAAGGAAAGTATAAAAGCAATTTTTATTGCATTTTCCAAGTCTACTTTACAAAAACAAGATACTATATAGCCTGAAAAATAAAATCCATTTCTGAGTCAAGAGTTGTCTTCTAGATTATCTTTAAAATAACTTTAAAATAAATAAAAAGTTTAAAAATACATTACTGAAATACAAATACAATATCTCTAGATTATTTTCTATCCAAAATTTATAACCATCCAAGAATCTTCCCGTGATTGAAATGTCTTGGTTCATATCATTCTCTATCTCTTCCAGAAGATTCCTTATATATATTTGTGACATTTTGATGCAAAAATAAGAAAACATAAACAAACTCCAACACTCTCACGTGTGTACACTTAAAGAAATTACTCATTTACACAAATTAAGTTCTCATTCTCACCTCTCAAAATTTTCAATAAAGCCAAGATTGGATTTTAAACCCTGGGTCTGAAAACTAAAAAAATAAAATAAATAAAAATTAAATTGAAAAGAAGGAAACATATATCCGATTTTGGGTCTAAGGCTTTGATAGCAAATGATAAAGAATCACTTCAAGGGAAAGTAAGATTCAGATTACGTCACAGGCAAAATCAATCATGTCAAGAATGATTCTAAACATGCCATCTAAACTATATATAATTGAAAAGAAACTTAACCCTTAGCTAAAAGAAAGCACGAATGCTTTTTTTACTATATTTTCCAATTGCAAGGATATTACATGGTTTTATTTTATAGTCCAAAATAAAACCCTTCCATGAGGTATTTATATAGCCTAAAATTAAAGCCTTCTATGAGATGTTTGAAGAGTTGTAACTTTCATATTTTTTTTGACCATAATTAGCCACTATGTAACCTTAAAATAAATAAAAAGTCTTGAAATACATGAATGAAATCTCTAAATTATCATCCACCCAAAATTTGTAACCATAGCAAATGAAACTCATCTTCTTTGAAGTTTATATTACATGATTGAAATGTCTGGGTTCATATCAATAAGTGATATTTATGGACTTGTCAACTAGTTTGAGGTGGATCTCAAGATCAATGAAACGTGCAAGTTAAAGCAATCTTTATACGACTTTAAACATTCTTCTAGAGCTTGGTTTGGACATTTTTTAAAAGTAGTCATGAGCTATGAATTTCAAAACTATGCAATTCTTGTCTCTTGCGATATATTGTAACAAAGCTTGACGTTTGAACTTAATAGATAAGTGTATCTGATGCAGATACATTTTCAAAACCTATCTCTGGTTCTGATGAACCCCCCCAACAGGCTGGTGGCTGGCTTCAGACCTTCTCAATTTCTTCCTACAAACAATATTTTGATGTCGATACTTCAGACGTTCTAGAGAGGATCAAGGATTCGCTTTATCCATTTAAAGGAACTTTTAACGAAAGGACAGCCGACACTCCAGATTTGTAAGCTCCTTTTTCTGTAACTATACTAATTTTGTATCCTATCTATTGAGAGAGTCCCACGTCAGCTAATTTAGGGAATGATCATAGGTTTATTAAGTAGGGAATACATTTCTATTGATATGAGGCCTTTTGGGGAAAGGCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAATGGACAATATCGTACTATTGTGGAGAGTCGTGTTAGATTATAGTCGGAAGGCTTTATGATTATAGTATCATTTTCTCTCCAGATACGGACCATTTTGGATATGTACAACCTTGATATTTGTGGCTGCTTCTATTGGAACGTTTGTAACATACATAGCACAAAAGTTACAACATAAAGATTGGAACTATGACATAAATTTGGTAACTTGGTCTGCTGGTTTGTTCTATGGCTATGTCACCATTGTTCCTCTTGGACTATATGTAGTCCTCAAGTACTTCTCGGTGCCTTCTGGCCTTGTTCAGCTCTTATGTCTCTATGGCTACTCTTTATTTGTGTTCATCCCAGCACTGGTAAGTCTAATCAGTCCATGATTCACTACTATTACTTATTATAAGATTACATGCTCTTCTTGTTCAATGTTCAAATGTGCATTATGTTTGTATTTGCAGTGTCTCTCTGTTGTTCCTTTGGAAATTTTTCGATGGGTTATTGCGGGCGTTGCGGGATTCATGTCTGCATCCTTTGTGGCACTCAATCTCCGAGCTCACATAATGTCAGCTGGTGAGAGGTGGGTTTTGATTGTGGCTTGTATCTTCTTGCTGCAGTTAGCTCTTGCTGTCATTCTCAAACTATATTTGTTCACCGTAACTGTATTAAACTAAACTCCCCGACCCTTGATAAACATGTCGTAGATTACGCACGAGAATTTCTTTTGGTTTTCAATACTTGTCATGTTTAGTGTTACAGTCATGCTTGTCCAAAGTGTGTTGCTTATGGTCGCATGGTAGATGTTTCAGTCTTTCTT

mRNA sequence

TGGAGATACTTCTCTGAGAAGGGAGAAGAAGAAGCAAGAATACGCAGAAGATGATGTCCGGTGGTAACTACACGACTATAGATAACCAAAATGTTTCAGGATCTGTTCCCGCTGTTCCAGATCAGGGACAGATAGCCGTTAAATTCACTGAGTCAAATCTTCAAACGTTTCCTCCTTCCGGAACTCAAGGAAAGATCGCTGGTGGATTCCAGCCACCTCGTGATGCTGATGATACATTTTCAAAACCTATCTCTGGTTCTGATGAACCCCCCCAACAGGCTGGTGGCTGGCTTCAGACCTTCTCAATTTCTTCCTACAAACAATATTTTGATGTCGATACTTCAGACGTTCTAGAGAGGATCAAGGATTCGCTTTATCCATTTAAAGGAACTTTTAACGAAAGGACAGCCGACACTCCAGATTTGTAAGCTCCTTTTTCTGTAACTATACTAATTTTGTATCCTATCTATTGAGAGAGTCCCACGTCAGCTAATTTAGGGAATGATCATAGGTTTATTAAGTAGGGAATACATTTCTATTGATATGAGGCCTTTTGGGGAAAGGCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAATGGACAATATCGTACTATTGTGGAGAGTCGTGTTAGATTATAGTCGGAAGGCTTTATGATTATAGTATCATTTTCTCTCCAGATACGGACCATTTTGGATATGTACAACCTTGATATTTGTGGCTGCTTCTATTGGAACGTTTGTAACATACATAGCACAAAAGTTACAACATAAAGATTGGAACTATGACATAAATTTGGTAACTTGGTCTGCTGGTTTGTTCTATGGCTATGTCACCATTGTTCCTCTTGGACTATATGTAGTCCTCAAGTACTTCTCGGTGCCTTCTGGCCTTGTTCAGCTCTTATGTCTCTATGGCTACTCTTTATTTGTGTTCATCCCAGCACTGTGTCTCTCTGTTGTTCCTTTGGAAATTTTTCGATGGGTTATTGCGGGCGTTGCGGGATTCATGTCTGCATCCTTTGTGGCACTCAATCTCCGAGCTCACATAATGTCAGCTGGTGAGAGGTGGGTTTTGATTGTGGCTTGTATCTTCTTGCTGCAGTTAGCTCTTGCTGTCATTCTCAAACTATATTTGTTCACCGTAACTGTATTAAACTAAACTCCCCGACCCTTGATAAACATGTCGTAGATTACGCACGAGAATTTCTTTTGGTTTTCAATACTTGTCATGTTTAGTGTTACAGTCATGCTTGTCCAAAGTGTGTTGCTTATGGTCGCATGGTAGATGTTTCAGTCTTTCTT

Coding sequence (CDS)

ATGATGTCCGGTGGTAACTACACGACTATAGATAACCAAAATGTTTCAGGATCTGTTCCCGCTGTTCCAGATCAGGGACAGATAGCCGTTAAATTCACTGAGTCAAATCTTCAAACGTTTCCTCCTTCCGGAACTCAAGGAAAGATCGCTGGTGGATTCCAGCCACCTCGTGATGCTGATGATACATTTTCAAAACCTATCTCTGGTTCTGATGAACCCCCCCAACAGGCTGGTGGCTGGCTTCAGACCTTCTCAATTTCTTCCTACAAACAATATTTTGATGTCGATACTTCAGACGTTCTAGAGAGGATCAAGGATTCGCTTTATCCATTTAAAGGAACTTTTAACGAAAGGACAGCCGACACTCCAGATTTGTAA

Protein sequence

MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTADTPDL

Homology

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BLAST of Carg27610 vs. NCBI nr
Match: XP_022961492.1 (protein YIPF1 homolog [Cucurbita moschata] >KAG6590392.1 Protein YIPF1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.8 bits (660), Expect = 2.3e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA
Sbjct: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120

Query: 121 DTPDL 126
           DTPDL
Sbjct: 121 DTPDL 125

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BLAST of Carg27610 vs. NCBI nr
Match: XP_023515448.1 (protein YIPF1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.8 bits (660), Expect = 2.3e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA
Sbjct: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120

Query: 121 DTPDL 126
           DTPDL
Sbjct: 121 DTPDL 125

[Close]

BLAST of Carg27610 vs. NCBI nr
Match: KAG7023954.1 (hypothetical protein SDJN02_14982 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.8 bits (660), Expect = 2.3e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA
Sbjct: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120

Query: 121 DTPDL 126
           DTPDL
Sbjct: 121 DTPDL 125

[Close]

BLAST of Carg27610 vs. NCBI nr
Match: XP_022968778.1 (protein YIPF1 homolog [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 6.8e-65
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFSKPISGSDEPPQQ GGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA
Sbjct: 61  DTFSKPISGSDEPPQQGGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120

Query: 121 DTPDL 126
           DTPDL
Sbjct: 121 DTPDL 125

[Close]

BLAST of Carg27610 vs. NCBI nr
Match: XP_038877563.1 (protein YIPF1 homolog [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 3.3e-59
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQI VKFT+SNLQTFPPSGTQGKI+GG QPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQITVKFTDSNLQTFPPSGTQGKISGGSQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQ-AGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERT 120
           DTFSKPISGSDE PQQ  GGW +TFSISSYKQYFDVDTSDVLERIKDSLYPF+GTFNERT
Sbjct: 61  DTFSKPISGSDESPQQGGGGWFRTFSISSYKQYFDVDTSDVLERIKDSLYPFRGTFNERT 120

Query: 121 ADTPDL 126
           ADTPDL
Sbjct: 121 ADTPDL 126

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BLAST of Carg27610 vs. ExPASy TrEMBL
Match: A0A6J1HAC1 (Protein YIP OS=Cucurbita moschata OX=3662 GN=LOC111462054 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.1e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA
Sbjct: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120

Query: 121 DTPDL 126
           DTPDL
Sbjct: 121 DTPDL 125

[Close]

BLAST of Carg27610 vs. ExPASy TrEMBL
Match: A0A6J1HZ32 (Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111467911 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.3e-65
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFSKPISGSDEPPQQ GGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA
Sbjct: 61  DTFSKPISGSDEPPQQGGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120

Query: 121 DTPDL 126
           DTPDL
Sbjct: 121 DTPDL 125

[Close]

BLAST of Carg27610 vs. ExPASy TrEMBL
Match: A0A1S3BPN2 (Protein YIP OS=Cucumis melo OX=3656 GN=LOC103492175 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.7e-58
Identity = 112/126 (88.89%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQ+ VKFT+SNLQTFPPSGTQGKI+GG QPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQMTVKFTDSNLQTFPPSGTQGKISGGSQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQ-AGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERT 120
           DTFSKPISGSDE  QQ  GGWL+TF++SSYKQYFDVDTSDVLERIKDSL+PF+GTFNERT
Sbjct: 61  DTFSKPISGSDESTQQGGGGWLRTFAVSSYKQYFDVDTSDVLERIKDSLFPFRGTFNERT 120

Query: 121 ADTPDL 126
           ADTPDL
Sbjct: 121 ADTPDL 126

[Close]

BLAST of Carg27610 vs. ExPASy TrEMBL
Match: A0A0A0LWG0 (Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_1G570080 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 112/130 (86.15%), Postives = 120/130 (92.31%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSGSVPAVPDQGQ+ VKFT+SNLQTFPPSGTQGKI+GG QPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQMTVKFTDSNLQTFPPSGTQGKISGGSQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQ-----AGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTF 120
           DTFSKPIS SDE PQQ      GGWL+TF++SSYKQYFDVDTSDVLERIKDSL+PF+GTF
Sbjct: 61  DTFSKPISSSDESPQQGGGGGGGGWLRTFAVSSYKQYFDVDTSDVLERIKDSLFPFRGTF 120

Query: 121 NERTADTPDL 126
           NERTADTPDL
Sbjct: 121 NERTADTPDL 130

[Close]

BLAST of Carg27610 vs. ExPASy TrEMBL
Match: A0A6J1HXI0 (Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111468929 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTIDNQNVSG+VPAVPDQGQI VKF +S+LQTFPPSGTQGKI GG QPPRDAD
Sbjct: 1   MMSGGNYTTIDNQNVSGAVPAVPDQGQITVKFNDSSLQTFPPSGTQGKITGGSQPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFSKPISGSDE PQQ GGWL+TF+ISSYKQYFDVDTSDVLERIKDSL+PF+GTFNERTA
Sbjct: 61  DTFSKPISGSDETPQQ-GGWLRTFAISSYKQYFDVDTSDVLERIKDSLFPFRGTFNERTA 120

Query: 121 DTPDL 126
           DTPDL
Sbjct: 121 DTPDL 124

[Close]

BLAST of Carg27610 vs. TAIR 10
Match: AT5G27490.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 188.0 bits (476), Expect = 4.7e-48
Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGG+YT ID+Q VSGSVPAVPD G + VKF +SNLQTFPPS TQGKI+GG  PPRDAD
Sbjct: 2   MMSGGSYTNIDHQKVSGSVPAVPDPGHVTVKFADSNLQTFPPSATQGKISGGTNPPRDAD 61

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           DTFS+P++G+ + P Q+ GWL  F++ +YK YFDVDTSDV+ER+K+SL+PF+GTF E+TA
Sbjct: 62  DTFSRPVNGTTDEP-QSSGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTA 121

Query: 121 DTPDL 126
           + PDL
Sbjct: 122 NNPDL 125

[Close]

BLAST of Carg27610 vs. TAIR 10
Match: AT3G05280.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 184.5 bits (467), Expect = 5.2e-47
Identity = 87/125 (69.60%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MMSGGNYTTIDNQNVSGSVPAVPDQGQIAVKFTESNLQTFPPSGTQGKIAGGFQPPRDAD 60
           MMSGGNYTTID+Q VSGSVP+VPD G   VKF ESNLQTFPPS TQGKI+GG  PPRDAD
Sbjct: 1   MMSGGNYTTIDSQKVSGSVPSVPDPGHTTVKFAESNLQTFPPSATQGKISGGSNPPRDAD 60

Query: 61  DTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNERTA 120
           D+FS   +GS + P Q+GGWL  F++ +YK +FDVDTSDV+ER+K+SL+PF+GTF E+TA
Sbjct: 61  DSFSGHGNGSTDEP-QSGGWLHKFTVGAYKPFFDVDTSDVVERLKESLFPFRGTFTEKTA 120

Query: 121 DTPDL 126
           D PDL
Sbjct: 121 DKPDL 124

[Close]

BLAST of Carg27610 vs. TAIR 10
Match: AT2G39805.1 (Integral membrane Yip1 family protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10
Identity = 43/128 (33.59%), Postives = 59/128 (46.09%), Query Frame = 0


Query: 6   NYTTIDNQNVSGSVPAV--PDQGQIAVKFTESN------LQTFPPSGTQGKIAGGFQPPR 65
           ++  + + ++ GSVPAV   D+    V     N      +Q FPP+   G    G+Q   
Sbjct: 4   SFANLQSSHLLGSVPAVISDDKRSTNVPIASVNEGPSASMQIFPPN--LGNNTKGYQ--- 63

Query: 66  DADDTFSKPISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFNE 125
               T   P  G  + P  +  W   F++ SY QYFDVDT  VL R+  SLYP  G F  
Sbjct: 64  ----TLESPTEGPAQQP--SNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYPTSGDFFN 120

[Close]

BLAST of Carg27610 vs. TAIR 10
Match: AT2G39805.2 (Integral membrane Yip1 family protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-09
Identity = 43/129 (33.33%), Postives = 60/129 (46.51%), Query Frame = 0


Query: 6   NYTTIDNQNVSGSVPAV--PDQGQIAVKFTESN------LQTFPPSGTQGKIAGGFQPPR 65
           ++  + + ++ GSVPAV   D+    V     N      +Q FPP+   G    G+Q   
Sbjct: 4   SFANLQSSHLLGSVPAVISDDKRSTNVPIASVNEGPSASMQIFPPN--LGNNTKGYQ--- 63

Query: 66  DADDTFSKP-ISGSDEPPQQAGGWLQTFSISSYKQYFDVDTSDVLERIKDSLYPFKGTFN 125
               T   P + G  + P  +  W   F++ SY QYFDVDT  VL R+  SLYP  G F 
Sbjct: 64  ----TLESPTVEGPAQQP--SNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYPTSGDFF 121

The following BLAST results are available for this feature:

BLAST of Carg27610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961492.1	2.3e-65	100.00	protein YIPF1 homolog [Cucurbita moschata] >KAG6590392.1 Protein YIPF1-like prot...	[more]
XP_023515448.1	2.3e-65	100.00	protein YIPF1 homolog [Cucurbita pepo subsp. pepo]	[more]
KAG7023954.1	2.3e-65	100.00	hypothetical protein SDJN02_14982 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022968778.1	6.8e-65	99.20	protein YIPF1 homolog [Cucurbita maxima]	[more]
XP_038877563.1	3.3e-59	92.06	protein YIPF1 homolog [Benincasa hispida]	[more]

BLAST of Carg27610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAC1	1.1e-65	100.00	Protein YIP OS=Cucurbita moschata OX=3662 GN=LOC111462054 PE=3 SV=1	[more]
A0A6J1HZ32	3.3e-65	99.20	Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111467911 PE=3 SV=1	[more]
A0A1S3BPN2	8.7e-58	88.89	Protein YIP OS=Cucumis melo OX=3656 GN=LOC103492175 PE=3 SV=1	[more]
A0A0A0LWG0	1.5e-57	86.15	Protein YIP OS=Cucumis sativus OX=3659 GN=Csa_1G570080 PE=3 SV=1	[more]
A0A6J1HXI0	1.9e-57	89.60	Protein YIP OS=Cucurbita maxima OX=3661 GN=LOC111468929 PE=3 SV=1	[more]

BLAST of Carg27610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27490.1	4.7e-48	68.00	Integral membrane Yip1 family protein	[more]
AT3G05280.1	5.2e-47	69.60	Integral membrane Yip1 family protein	[more]
AT2G39805.1	3.0e-10	33.59	Integral membrane Yip1 family protein	[more]
AT2G39805.2	2.5e-09	33.33	Integral membrane Yip1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..78
None	No IPR available	PANTHER	PTHR12822:SF9	PROTEIN YIPF	coord: 1..125
IPR039765	Protein Yip5/YIPF1/YIPF2	PANTHER	PTHR12822	UNCHARACTERIZED	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27610-RA	Carg27610-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0031267	small GTPase binding