Carg27588 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27588
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription factor, TCP
Location	Carg_Chr07: 4811800 .. 4812432 (+)
RNA-Seq Expression	Carg27588
Synteny	Carg27588

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCCGAAATCCTTCCCCACAAATTTCCCTCTTCCTCCGATCCCCATCCTCAGCCCACCGCTTCTCACTCACTCGCAGTCGCCACTGATTCATCTCTGCCCAACACAACGCAACCCGTCGTCCATCGCAAATCCTCCACCGCTTTGTCCTCGTCATCTTCGAGGGACCGCCACACCAAGGTCAACGGCAGAGGGCGCCGTGTCCGCATGCCGGCTCTCTGTGCCGCTCGCATCTTTCAGTTGACGTGCGAGCTTGGCCATCGTTCTGATGGCGAGACCATCGAGTGGCTTCTCCGTCAGGCTGAGCCCTCTATCATCGCAGCCACTGGTACTGGGACTGTTCCGGCTGCTCCGATCTCCACCGTTTCTCCGGTTATGGCCTCGTCTGCTCCGTCGGTTGCTTGTAGGGTTCAGCCGGTGGCAGTGGCTGCTGCTGCTGGTGGGCATGGAATGTTCGGGATGCCACCGCCGAGCTGCCGTTTGAATTTATGCCAGCCGGTCGGGATGAATTACTCTGCTGGCGGGGATGATTACCGGTACATGCCGTTCACTGCGCTTCTGTTGCAGCCGGCGACGGCGGACGAGGCGGAGGAGAGACATGAGGCGGAGGAGATCTTCAGAGAACAATAG

mRNA sequence

ATGGTATCCGAAATCCTTCCCCACAAATTTCCCTCTTCCTCCGATCCCCATCCTCAGCCCACCGCTTCTCACTCACTCGCAGTCGCCACTGATTCATCTCTGCCCAACACAACGCAACCCGTCGTCCATCGCAAATCCTCCACCGCTTTGTCCTCGTCATCTTCGAGGGACCGCCACACCAAGGTCAACGGCAGAGGGCGCCGTGTCCGCATGCCGGCTCTCTGTGCCGCTCGCATCTTTCAGTTGACGTGCGAGCTTGGCCATCGTTCTGATGGCGAGACCATCGAGTGGCTTCTCCGTCAGGCTGAGCCCTCTATCATCGCAGCCACTGGTACTGGGACTGTTCCGGCTGCTCCGATCTCCACCGTTTCTCCGGTTATGGCCTCGTCTGCTCCGTCGGTTGCTTGTAGGGTTCAGCCGGTGGCAGTGGCTGCTGCTGCTGGTGGGCATGGAATGTTCGGGATGCCACCGCCGAGCTGCCGTTTGAATTTATGCCAGCCGGTCGGGATGAATTACTCTGCTGGCGGGGATGATTACCGGTACATGCCGTTCACTGCGCTTCTGTTGCAGCCGGCGACGGCGGACGAGGCGGAGGAGAGACATGAGGCGGAGGAGATCTTCAGAGAACAATAG

Coding sequence (CDS)

ATGGTATCCGAAATCCTTCCCCACAAATTTCCCTCTTCCTCCGATCCCCATCCTCAGCCCACCGCTTCTCACTCACTCGCAGTCGCCACTGATTCATCTCTGCCCAACACAACGCAACCCGTCGTCCATCGCAAATCCTCCACCGCTTTGTCCTCGTCATCTTCGAGGGACCGCCACACCAAGGTCAACGGCAGAGGGCGCCGTGTCCGCATGCCGGCTCTCTGTGCCGCTCGCATCTTTCAGTTGACGTGCGAGCTTGGCCATCGTTCTGATGGCGAGACCATCGAGTGGCTTCTCCGTCAGGCTGAGCCCTCTATCATCGCAGCCACTGGTACTGGGACTGTTCCGGCTGCTCCGATCTCCACCGTTTCTCCGGTTATGGCCTCGTCTGCTCCGTCGGTTGCTTGTAGGGTTCAGCCGGTGGCAGTGGCTGCTGCTGCTGGTGGGCATGGAATGTTCGGGATGCCACCGCCGAGCTGCCGTTTGAATTTATGCCAGCCGGTCGGGATGAATTACTCTGCTGGCGGGGATGATTACCGGTACATGCCGTTCACTGCGCTTCTGTTGCAGCCGGCGACGGCGGACGAGGCGGAGGAGAGACATGAGGCGGAGGAGATCTTCAGAGAACAATAG

Protein sequence

MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYRYMPFTALLLQPATADEAEERHEAEEIFREQ

Homology

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BLAST of Carg27588 vs. NCBI nr
Match: KAG7027254.1 (Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 409.5 bits (1051), Expect = 1.8e-110
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180
           STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 211
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

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BLAST of Carg27588 vs. NCBI nr
Match: KAG6595232.1 (Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 400.2 bits (1027), Expect = 1.1e-107
Identity = 207/210 (98.57%), Postives = 207/210 (98.57%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPH FPSSSDPH QPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHIFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180
           STVSPVMASSAPSVACRVQPVAVAAAAGG GMFGMPPPSCRLNLCQPVGMNYSAGGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGQGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 211
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Carg27588 vs. NCBI nr
Match: XP_022962907.1 (transcription factor TCP11-like [Cucurbita moschata])

HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-107
Identity = 206/210 (98.10%), Postives = 207/210 (98.57%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPHPQ TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHPQTTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGT+PAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTIPAAPI 120

Query: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180
           STVSPVMASSAPSVACRVQPVAVAAAAGG  MFGMPPPSCRLNLCQPVGMNYSAGGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGQRMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 211
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Carg27588 vs. NCBI nr
Match: XP_022972643.1 (transcription factor TCP11-like [Cucurbita maxima])

HSP 1 Score: 391.3 bits (1004), Expect = 5.1e-105
Identity = 204/210 (97.14%), Postives = 206/210 (98.10%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPH QPTASHSLAV TDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVDTDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180
           STVSPVMASSAPSVACRVQPVAVAAA+ G GMFGMPPPSCRLNLCQPVGM+YSAGGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAS-GQGMFGMPPPSCRLNLCQPVGMDYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 211
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 209

[Close]

BLAST of Carg27588 vs. NCBI nr
Match: XP_023518605.1 (transcription factor TCP11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.5 bits (994), Expect = 7.3e-104
Identity = 202/210 (96.19%), Postives = 204/210 (97.14%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPH QPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCA+RIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCASRIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180
           STVS VMASSAPSVACRVQPVAV AAAGG GMFGMPPPSCRLNLCQP GM+YS GGDDYR
Sbjct: 121 STVSSVMASSAPSVACRVQPVAV-AAAGGQGMFGMPPPSCRLNLCQPAGMDYSNGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 211
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 209

[Close]

BLAST of Carg27588 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-30
Identity = 90/181 (49.72%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 27  AVATDSSLPNTTQPVVHRKSST--ALSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTC 86
           A+A++S   + TQ  V + SS+     S+ ++DRHTKVNGR RRV MPAL AARIFQLT 
Sbjct: 15  AIASESR--SQTQFGVSKSSSSGGGCISARTKDRHTKVNGRSRRVTMPALAAARIFQLTR 74

Query: 87  ELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSPVMASSAPSVACRVQPVAVA 146
           ELGH+++GETIEWLL QAEPSIIAATG GT     IS    V A  + S +    P    
Sbjct: 75  ELGHKTEGETIEWLLSQAEPSIIAATGYGT---KLISNWVDVAADDSSSSSSMTSPQTQT 134

Query: 147 AAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYRYMPFTALLLQPATADEAEERHEAE 206
                        PSCRL+LCQP+G+ Y   G  Y +MPFTA+LL+P T     E   AE
Sbjct: 135 QTP--------QSPSCRLDLCQPIGIQYPVNG--YSHMPFTAMLLEPMTTTAESEVEIAE 180

[Close]

BLAST of Carg27588 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.4e-26
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 8   HKFPSSSDPHPQPTASHSLAVATDSSLPNT-TQPVVHRKSSTALSSSSSRDRHTKVNGRG 67
           H+    S   PQ  +  S    T   L  T  +  V       L  +S++DRHTKV+GRG
Sbjct: 69  HQHQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRG 128

Query: 68  RRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPA 118
           RR+RMPALCAAR+FQLT ELGH+SDGETIEWLL+QAEPS+IAATGTGT+PA
Sbjct: 129 RRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPA 179

[Close]

BLAST of Carg27588 vs. ExPASy Swiss-Prot
Match: O23875 (Transcription factor PCF1 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF1 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.3e-26
Identity = 86/186 (46.24%), Postives = 102/186 (54.84%), Query Frame = 0


Query: 13  SSDPHPQPTASHSLA--VATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVR 72
           S+ P+P P  S + A   ++D + P   +P   RK      S SS DRH+KV GRGRRVR
Sbjct: 21  SAIPNPNPDLSIAAAEPPSSDGATPRRVRP---RK------SPSSSDRHSKVAGRGRRVR 80

Query: 73  MPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSPVMASS 132
           +PA+ AAR+FQLT ELGHR+DGETIEWLLRQAEPSIIAATGTG  P            + 
Sbjct: 81  IPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPE----------EAP 140

Query: 133 APSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYRYMPFTALLLQ 192
             +VA     VA AAAAGGH                        GG       +TALL+Q
Sbjct: 141 PAAVAIGSSSVAAAAAAGGH------------------------GGAFVHVPYYTALLMQ 163

Query: 193 PATADE 197
           P  ADE
Sbjct: 201 PPNADE 163

[Close]

BLAST of Carg27588 vs. ExPASy Swiss-Prot
Match: Q9C9L2 (Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 21  TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVRMPALCAARIF 80
           ++S SLA+ + +S PN+               +S++DRHTKV GRGRR+RMPA+CAAR+F
Sbjct: 24  SSSTSLAIISTTSEPNS------EPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVF 83

Query: 81  QLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPA 118
           QLT ELGH+SDGETIEWLL+QAEP++IAATGTGT+PA
Sbjct: 84  QLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPA 114

[Close]

BLAST of Carg27588 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25
Identity = 68/119 (57.14%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 23  SHSLAVATDSSLPNTTQP---VVHRKSSTALSSS---SSRDRHTKVNGRGRRVRMPALCA 82
           +  L  A+ S +P +T P    +   SSTA +++   S++DRHTKV+GRGRR+RMPALCA
Sbjct: 22  ARQLVDASLSIVPRSTPPEDSTLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCA 81

Query: 83  ARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSPVMASSAPSVA 136
           AR+FQLT ELGH+SDGETIEWLL+QAEP+I+AATGTGT+P A  ST+S  + SS  +++
Sbjct: 82  ARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP-ANFSTLSVSLRSSGSTLS 139

[Close]

BLAST of Carg27588 vs. ExPASy TrEMBL
Match: A0A6J1HDU7 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111463270 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 6.9e-108
Identity = 206/210 (98.10%), Postives = 207/210 (98.57%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPHPQ TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHPQTTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGT+PAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTIPAAPI 120

Query: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180
           STVSPVMASSAPSVACRVQPVAVAAAAGG  MFGMPPPSCRLNLCQPVGMNYSAGGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGQRMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 211
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 210

[Close]

BLAST of Carg27588 vs. ExPASy TrEMBL
Match: A0A6J1IAL2 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111471177 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.5e-105
Identity = 204/210 (97.14%), Postives = 206/210 (98.10%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60
           MVSEILPHKFPSSSDPH QPTASHSLAV TDSSLPNTTQPVVHRKSSTALSSSSSRDRHT
Sbjct: 1   MVSEILPHKFPSSSDPHSQPTASHSLAVDTDSSLPNTTQPVVHRKSSTALSSSSSRDRHT 60

Query: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120
           KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI
Sbjct: 61  KVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPI 120

Query: 121 STVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYR 180
           STVSPVMASSAPSVACRVQPVAVAAA+ G GMFGMPPPSCRLNLCQPVGM+YSAGGDDYR
Sbjct: 121 STVSPVMASSAPSVACRVQPVAVAAAS-GQGMFGMPPPSCRLNLCQPVGMDYSAGGDDYR 180

Query: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 211
           YMPFTALLLQPATADEAEERHEAEEIFREQ
Sbjct: 181 YMPFTALLLQPATADEAEERHEAEEIFREQ 209

[Close]

BLAST of Carg27588 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.5e-75
Identity = 165/211 (78.20%), Postives = 178/211 (84.36%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQPT-ASHSLAVATDSSLPNTTQPVVHRKSSTAL-SSSSSRDR 60
           M SEI  HKFPSSSD H QPT ASHS+  +  S    T Q VV RKS+ +L SSSSSRDR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 61  HTKVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120
           HTKVNGRGRRVRMPALCAARIFQLT ELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 121 PISTVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDD 180
           PIST+SP MASSA SV+CRVQ V V  AA   GMF MPPPSCRL+LCQPVG++YSA G+D
Sbjct: 121 PISTISPAMASSALSVSCRVQSVGV--AADEQGMFAMPPPSCRLDLCQPVGLDYSAAGND 180

Query: 181 YRYMPFTALLLQPATADEAEERHEAEEIFRE 210
           YR+MPFTALLLQP+TADEAEER E EE+FRE
Sbjct: 181 YRHMPFTALLLQPSTADEAEERQE-EEVFRE 208

[Close]

BLAST of Carg27588 vs. ExPASy TrEMBL
Match: A0A0A0KH86 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 8.5e-74
Identity = 154/208 (74.04%), Postives = 172/208 (82.69%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQ-PTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRH 60
           M S+I+ HKFPSSSDPH Q PTASHS+  +  S +  T Q ++ RKS+T LSSSSS+DRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 61  TKVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLT ELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 121 ISTVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDY 180
           ISTVS  MASS  SV+CRVQPV V  +  G GMF MPPPSCRL+LCQPVGM YSA G+DY
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGS--GQGMFAMPPPSCRLDLCQPVGMEYSAAGNDY 180

Query: 181 RYMPFTALLLQPATADEAEERHEAEEIF 208
           R+MPFTALLLQP+TA+E EER E E  F
Sbjct: 181 RHMPFTALLLQPSTAEETEERQEEELFF 206

[Close]

BLAST of Carg27588 vs. ExPASy TrEMBL
Match: A0A1S3CGZ3 (uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 154/210 (73.33%), Postives = 175/210 (83.33%), Query Frame = 0


Query: 1   MVSEILPHKFPSSSDPHPQ-PTASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRH 60
           M S+I+ HKFPSSSDPH Q PTASHS+  +  S    + Q ++ RKS+T+LSSSSS+DRH
Sbjct: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175

Query: 61  TKVNGRGRRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120
            KVNGRGRRVRMPALCAARIFQLT ELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235

Query: 121 ISTVSPVMASSAPSVACRVQPVAVAAAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDY 180
           ISTVS  MASS  SV+CR+QPV V  +  G GMF MPPPSCRL+LCQPVGM YSA G+DY
Sbjct: 236 ISTVSSAMASSGRSVSCRIQPVTVGGS--GQGMFSMPPPSCRLDLCQPVGMEYSAAGNDY 295

Query: 181 RYMPFTALLLQPATADEAEERHEAEEIFRE 210
           R+MPFTALLLQP+T +E EER E EE+FRE
Sbjct: 296 RHMPFTALLLQPSTGEETEERQE-EEVFRE 322

[Close]

BLAST of Carg27588 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-31
Identity = 90/181 (49.72%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 27  AVATDSSLPNTTQPVVHRKSST--ALSSSSSRDRHTKVNGRGRRVRMPALCAARIFQLTC 86
           A+A++S   + TQ  V + SS+     S+ ++DRHTKVNGR RRV MPAL AARIFQLT 
Sbjct: 15  AIASESR--SQTQFGVSKSSSSGGGCISARTKDRHTKVNGRSRRVTMPALAAARIFQLTR 74

Query: 87  ELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSPVMASSAPSVACRVQPVAVA 146
           ELGH+++GETIEWLL QAEPSIIAATG GT     IS    V A  + S +    P    
Sbjct: 75  ELGHKTEGETIEWLLSQAEPSIIAATGYGT---KLISNWVDVAADDSSSSSSMTSPQTQT 134

Query: 147 AAAGGHGMFGMPPPSCRLNLCQPVGMNYSAGGDDYRYMPFTALLLQPATADEAEERHEAE 206
                        PSCRL+LCQP+G+ Y   G  Y +MPFTA+LL+P T     E   AE
Sbjct: 135 QTP--------QSPSCRLDLCQPIGIQYPVNG--YSHMPFTAMLLEPMTTTAESEVEIAE 180

[Close]

BLAST of Carg27588 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 119.0 bits (297), Expect = 4.5e-27
Identity = 64/111 (57.66%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 8   HKFPSSSDPHPQPTASHSLAVATDSSLPNT-TQPVVHRKSSTALSSSSSRDRHTKVNGRG 67
           H+    S   PQ  +  S    T   L  T  +  V       L  +S++DRHTKV+GRG
Sbjct: 69  HQHQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRG 128

Query: 68  RRVRMPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPA 118
           RR+RMPALCAAR+FQLT ELGH+SDGETIEWLL+QAEPS+IAATGTGT+PA
Sbjct: 129 RRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPA 179

[Close]

BLAST of Carg27588 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-26
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 0


Query: 21  TASHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVRMPALCAARIF 80
           ++S SLA+ + +S PN+               +S++DRHTKV GRGRR+RMPA+CAAR+F
Sbjct: 24  SSSTSLAIISTTSEPNS------EPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVF 83

Query: 81  QLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPA 118
           QLT ELGH+SDGETIEWLL+QAEP++IAATGTGT+PA
Sbjct: 84  QLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPA 114

[Close]

BLAST of Carg27588 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-26
Identity = 68/119 (57.14%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 23  SHSLAVATDSSLPNTTQP---VVHRKSSTALSSS---SSRDRHTKVNGRGRRVRMPALCA 82
           +  L  A+ S +P +T P    +   SSTA +++   S++DRHTKV+GRGRR+RMPALCA
Sbjct: 22  ARQLVDASLSIVPRSTPPEDSTLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCA 81

Query: 83  ARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTVSPVMASSAPSVA 136
           AR+FQLT ELGH+SDGETIEWLL+QAEP+I+AATGTGT+P A  ST+S  + SS  +++
Sbjct: 82  ARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP-ANFSTLSVSLRSSGSTLS 139

[Close]

BLAST of Carg27588 vs. TAIR 10
Match: AT3G27010.1 (TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 14  SDPHPQPTA---SHSLAVATDSSLPNTTQPVVHRKSSTALSSSSSRDRHTKVNGRGRRVR 73
           SD + +PT       + V+     PN        ++      SS++DRHTKV GRGRR+R
Sbjct: 37  SDENRKPTTEIKDFQIVVSASDKEPNKKS---QNQNQLGPKRSSNKDRHTKVEGRGRRIR 96

Query: 74  MPALCAARIFQLTCELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPIST 123
           MPALCAARIFQLT ELGH+SDGETI+WLL+QAEPSIIAATG+GT+PA+ +++
Sbjct: 97  MPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALAS 145

The following BLAST results are available for this feature:

BLAST of Carg27588 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7027254.1	1.8e-110	100.00	Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6595232.1	1.1e-107	98.57	Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022962907.1	1.4e-107	98.10	transcription factor TCP11-like [Cucurbita moschata]	[more]
XP_022972643.1	5.1e-105	97.14	transcription factor TCP11-like [Cucurbita maxima]	[more]
XP_023518605.1	7.3e-104	96.19	transcription factor TCP11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg27588 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK7	1.5e-30	49.72	Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1	[more]
Q93Z00	6.4e-26	57.66	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
O23875	8.3e-26	46.24	Transcription factor PCF1 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF1 PE=1 ...	[more]
Q9C9L2	2.4e-25	60.82	Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1	[more]
Q9C518	2.4e-25	57.14	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]

BLAST of Carg27588 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDU7	6.9e-108	98.10	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111463270 PE...	[more]
A0A6J1IAL2	2.5e-105	97.14	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111471177 PE=4...	[more]
A0A6J1EK07	3.5e-75	78.20	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE...	[more]
A0A0A0KH86	8.5e-74	74.04	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV...	[more]
A0A1S3CGZ3	1.1e-73	73.33	uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=...	[more]

BLAST of Carg27588 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37000.1	1.0e-31	49.72	TCP family transcription factor	[more]
AT3G47620.1	4.5e-27	57.66	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT1G69690.1	1.7e-26	60.82	TCP family transcription factor	[more]
AT1G58100.1	1.7e-26	57.14	TCP family transcription factor	[more]
AT3G27010.1	1.1e-25	55.36	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 54..128 e-value: 1.1E-27 score: 97.5
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 55..109 score: 26.033529
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 41..127
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 41..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27588-RA	Carg27588-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity