Carg27565 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27565
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA repair protein XRCC3 homolog
Location	Carg_Chr12: 8127692 .. 8128573 (-)
RNA-Seq Expression	Carg27565
Synteny	Carg27565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTCACCGAGATCGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAACGCCGCCTCTCTCTATATCCACACCGAATTCCCTTTTCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCAATTGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGGTAGTTGATTTGATGGATTCTTCTGATGGTATAAATGCATTGAGAATTGGGAATTTGAAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCATTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATAGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

mRNA sequence

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTCACCGAGATCGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAACGCCGCCTCTCTCTATATCCACACCGAATTCCCTTTTCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCAATTGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGGTAGTTGATTTGATGGATTCTTCTGATGGTATAAATGCATTGAGAATTGGGAATTTGAAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCATTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATAGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Coding sequence (CDS)

ATGACGCCGGAAAATCTCCTCCATCTCCTTCAAACCACTCAAAAGTGCACCTTTGGATGTCCGATCATCGACCGCTCCGTCGGCGGCGGCGTCGCTTGCAACTCCCTCACCGAGATCGTCTCCGAGAGCGGCTGCGGTAAAACCCAGCTCTGCCTCCAACTCTGCCACTGCGCTCAGCTCCCCCTTTCCCTCGGCGGCCTCAACGCCGCCTCTCTCTATATCCACACCGAATTCCCTTTTCCCTTCCGCCGCCTTCAACAGCTCTCCCAAGCCTTTTCCTCGTCATACCCCCAAATTTCCAATCCCTCCGATCACATATTTGTCGAACCTGTTCACTCTGCACAACAACTGTTCGACATAATGCCTAAGATAGAATCCTTTCTTGCAAATCGTGATTCCCCTTTGCCCACCAGGCTAATTGTGATCGATTCAATTGCAGCATTGTTTCGGTCCGATTTCGATAACACCCCGTCTGATCTCAAGCGGAGATCGGCTCTGTTCTTCAAGATTTCTGGGAAGTTGAAGCTGTTGGCTAAGAGGTATTCTTTGGCTGTGGTGTTGACAAATCAGGTAGTTGATTTGATGGATTCTTCTGATGGTATAAATGCATTGAGAATTGGGAATTTGAAGTCTCTATGTTCATCGGGACGACGAGTTTGCCCGGCATTGGGGATCGCTTGGGCTAATTGTGTTAATTCGAGATTGTTTTTGTCAAGAAATGAGGAAGTTGTTGGAGAAGGTGATGGGGTGGTGAATAGTGGTGAATTAGCACAAAGAAGAACAAGAAGATGGCTTCATGTTGTTTTTGCACCTCACTTACCTAAATCATCTTGTGAGTATGTAATCAATAGACAAGGAGTTGTGGGAGTTGAAAGCCAATGA

Protein sequence

MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ

Homology

[Close]

BLAST of Carg27565 vs. NCBI nr
Match: KAG7020901.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 589.7 bits (1519), Expect = 1.4e-164
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Carg27565 vs. NCBI nr
Match: XP_022938282.1 (DNA repair protein XRCC3 homolog [Cucurbita moschata])

HSP 1 Score: 585.9 bits (1509), Expect = 2.0e-163
Identity = 291/293 (99.32%), Postives = 291/293 (99.32%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL AASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Carg27565 vs. NCBI nr
Match: XP_022969693.1 (DNA repair protein XRCC3 homolog [Cucurbita maxima])

HSP 1 Score: 576.2 bits (1484), Expect = 1.6e-160
Identity = 284/293 (96.93%), Postives = 289/293 (98.63%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTT+KCTFGCPIIDRSVGGGVACNSLTEIV+ESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDL+DSSDGI+ALRIGNLKSLCSSGRRVCPALGI WANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Carg27565 vs. NCBI nr
Match: XP_023538317.1 (DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573.5 bits (1477), Expect = 1.0e-159
Identity = 285/293 (97.27%), Postives = 287/293 (97.95%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCH AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHFAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLNA+SLYIHTEFPFPFRRLQQ SQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQFSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIE FLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIEFFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMDSSDGI+ALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGISALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Carg27565 vs. NCBI nr
Match: KAG6586077.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 537.0 bits (1382), Expect = 1.0e-148
Identity = 271/293 (92.49%), Postives = 271/293 (92.49%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL AASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQ                    SLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQ--------------------SLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 273

[Close]

BLAST of Carg27565 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.9e-97
Identity = 174/297 (58.59%), Postives = 223/297 (75.08%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGLN +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+++SDG++ LRIGNL+ L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Carg27565 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.3e-36
Identity = 104/298 (34.90%), Postives = 150/298 (50.34%), Query Frame = 0


Query: 7   LHLLQTT-------QKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQ 66
           LHL Q         Q+ + GCP++D+ +GGG+    +T +   S  GKTQL LQLC   Q
Sbjct: 66  LHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSLGGLNAASLYIHTEFPFPFRRLQQL---SQAFSSSYP----QISNPSDHIFVEPVH 126
            P   GGL A ++YI TE  FP +RL QL    +   +  P    +    S+HIF+E   
Sbjct: 126 FPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAA 185

Query: 127 SAQQLFDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISG 186
               L + + K    L +R      RL+V+DSIAA FR +F    S +  R+ L   +  
Sbjct: 186 DVDTLLECVSKKVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGA 245

Query: 187 KLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVN 246
            L+ L+  +   V+  NQV D+++    ++       +SL +S  R+ PALGI WAN + 
Sbjct: 246 TLRRLSSTFRSPVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWANQLL 305

Query: 247 SRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGV 291
            RL + R  E     D V        R   R L V+FAPHLP SSC Y ++ +G+ G+
Sbjct: 306 MRLMVDRTHE-----DDVTTG---LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

[Close]

BLAST of Carg27565 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-32
Identity = 100/283 (35.34%), Postives = 134/283 (47.35%), Query Frame = 0


Query: 14  QKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLNAASLY 73
           Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLC   Q P   GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPFRRLQQL---SQAFSSSYP----QISNPSDHIFVEPVHSAQQLFDIMPKIES 133
           I TE  FP +RLQQL        +  P    Q       IF+E V     L + + K   
Sbjct: 140 ICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVP 199

Query: 134 FLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKRYSLAVV 193
            L +R      RL+VIDS+AA FR +FD+  S  + R      +   L+ L+  +   V+
Sbjct: 200 VLLSRGM---ARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQSPVL 259

Query: 194 LTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGE 253
             NQV + M+     +         L     RV PALGI WAN +  RL   R  E    
Sbjct: 260 CINQVTEAMEEQGAAHG-------PLGFWDERVSPALGITWANQLLVRLLADRLRE---- 319

Query: 254 GDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVG 290
                   E A     R L V+ APHLP SSC Y I+ +GV G
Sbjct: 320 -------EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]

BLAST of Carg27565 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-31
Identity = 104/299 (34.78%), Postives = 140/299 (46.82%), Query Frame = 0


Query: 7   LHLL-------QTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQ 66
           LHLL       +  Q+ + GCP++D  + GG+  + +TE+   S  GKTQL LQLC   Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSLGGLNAASLYIHTEFPFPFRRLQQL---SQAFSSSYP--QISNP--SDHIFVEPVH 126
           LP   GGL A ++Y+ TE  FP RRLQQL    Q   +  P   IS       IF+E   
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAA 185

Query: 127 SAQQLFD-IMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKIS 186
               L   +  K+   LA        RL+VIDS+AA FR +FD   + L  R+     + 
Sbjct: 186 DVDTLLQCVREKVPVLLARG----MARLVVIDSVAAPFRCEFDG--AALALRAQRLLALG 245

Query: 187 GKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCV 246
            +L+ L+  +   V+  NQV + ++  D            L +    + PALGI WAN +
Sbjct: 246 AELRRLSCAFRSPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWANQL 305

Query: 247 NSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGV 291
             RL   R               E       R L VVFAPHLP SSC Y I  +GV G+
Sbjct: 306 LVRLLADRQ-----------RPEEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVRGM 335

[Close]

BLAST of Carg27565 vs. ExPASy Swiss-Prot
Match: O15315 (DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 6.2e-27
Identity = 85/276 (30.80%), Postives = 139/276 (50.36%), Query Frame = 0


Query: 23  IDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSLGGLNAASLYIHTEFPFPF 82
           +D ++ GGVAC SLTEI    GCGKTQ C+ +   A LP ++GGL  A +YI TE  F  
Sbjct: 90  LDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSA 149

Query: 83  RRLQQLSQAFSSSYPQISNPSDHIFV--EPVHSAQQLF--DIMPKIESFLANRDSPLPTR 142
            RL ++++   S +P+  N  + + +    VH  ++L   +++ +IES L         +
Sbjct: 150 ERLVEIAE---SRFPRYFNTEEKLLLTSSKVHLYRELTCDEVLQRIES-LEEEIISKGIK 209

Query: 143 LIVIDSIAALFRSDFD-NTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVD---- 202
           L+++DS+A++ R +FD     +LK R+    + +  LK LA+ +S+ V+LTNQ+      
Sbjct: 210 LVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSG 269

Query: 203 -LMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRNEEVVGEGDGVVN 262
            L   +D ++     +L    S    V  ALG  W++ VN+RL L   +           
Sbjct: 270 ALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSVNTRLILQYLDS---------- 329

Query: 263 SGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVV 289
                    RR + +  +P  P +S  Y I  +G+V
Sbjct: 330 --------ERRQILIAKSPLAPFTSFVYTIKEEGLV 343

[Close]

BLAST of Carg27565 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 585.9 bits (1509), Expect = 9.5e-164
Identity = 291/293 (99.32%), Postives = 291/293 (99.32%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGL AASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Carg27565 vs. ExPASy TrEMBL
Match: A0A6J1I1Q9 (DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=4 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 7.5e-161
Identity = 284/293 (96.93%), Postives = 289/293 (98.63%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTT+KCTFGCPIIDRSVGGGVACNSLTEIV+ESGCGKTQLCLQLCHCAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLSLGGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ  NPSDHIFVEPVHSAQQLFDI
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFPNPSDHIFVEPVHSAQQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR
Sbjct: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDL+DSSDGI+ALRIGNLKSLCSSGRRVCPALGI WANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEGDGVVN GELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ
Sbjct: 241 EEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Carg27565 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 6.2e-147
Identity = 265/294 (90.14%), Postives = 278/294 (94.56%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVAC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQ-RRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 294
           EEVVGEG+G++N  EL Q RRTRRWLHVVFAPHLPKSSCEYVINR+GVVGVESQ
Sbjct: 241 EEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of Carg27565 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.8e-146
Identity = 264/293 (90.10%), Postives = 276/293 (94.20%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+AC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRR-TRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           EEVVGEG+G+VN  EL QRR TRRWLHVVFAPHLPKSSCEYVINR+GVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Carg27565 vs. ExPASy TrEMBL
Match: A0A1S3BRJ5 (DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.8e-146
Identity = 264/293 (90.10%), Postives = 276/293 (94.20%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MTPENLLHLLQTTQKCTFGCP IDRSVGGG+AC+SLTEIV+ESGCGKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           PLS GGLNA+SLYIHTEFPFPFRRLQQLSQAFSSSYPQ SNPSDHIFVEPVHSA QLFDI
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFSNPSDHIFVEPVHSAHQLFDI 120

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           MPKIES L NR+S LP RLIVIDSIAALFRSDFDNTPSDLKRRS+LFFKISGKLKLLAK+
Sbjct: 121 MPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLAKK 180

Query: 181 YSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLSRN 240
           YSLAVVLTNQVVDLM SSDG+NALRIGNLK LCSS RRVCPALG+AWANCVNSRLFLSRN
Sbjct: 181 YSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLSRN 240

Query: 241 EEVVGEGDGVVNSGELAQRR-TRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           EEVVGEG+G+VN  EL QRR TRRWLHVVFAPHLPKSSCEYVINR+GVVGVES
Sbjct: 241 EEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Carg27565 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 357.1 bits (915), Expect = 1.4e-98
Identity = 174/297 (58.59%), Postives = 223/297 (75.08%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGLN +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+++SDG++ LRIGNL+ L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Carg27565 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 357.1 bits (915), Expect = 1.4e-98
Identity = 174/297 (58.59%), Postives = 223/297 (75.08%), Query Frame = 0


Query: 3   PENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPL 62
           PENLL    T +K T GC I+D  + GG++C+SLTEIV+ESGCGKTQLCLQL  C QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQI-----SNPSDHIFVEPVHSAQQL 122
           S GGLN +SLY+H+EFPFPFRRL QLS  F  S P I      NP DH+FV+ VHS   L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  +  P +LIV+DS+AALFRS+FDNTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+++SDG++ LRIGNL+ L SSGRRV P+LG+AWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEE--VVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVES 293
           SR++   V    +   N      R  +R L +VF+P+LP SSCE++I R+G+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Carg27565 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 105.9 bits (263), Expect = 5.5e-23
Identity = 86/302 (28.48%), Postives = 144/302 (47.68%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSL 64
           ++LH  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QL    Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLNAASLYIHTEFPFPFRRLQQLSQA---------------FSSSYPQISNPSD---HI 124
           GGL   ++YI TE  F   R  Q+++A               F ++  Q+  P D   +I
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQM-KPEDILENI 213

Query: 125 FVEPVHSAQQLFDIMPKIESFLA-NRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSA 184
           F   V S  +   ++  +E F++ N+D     +++++DSI   FR D+D    DL +R+ 
Sbjct: 214 FYFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTR 273

Query: 185 LFFKISGKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGI 244
           +  +++ K   LAK++SLAVVL NQV      S+G   L +               ALG 
Sbjct: 274 VLSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGD 333

Query: 245 AWANCVNSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQ 288
           +W++   +R+ L  N      GD              R+ ++  +P LP +S  Y +  +
Sbjct: 334 SWSHSCTNRVILYWN------GD-------------ERYAYIDKSPSLPSASASYTVTSR 350

[Close]

BLAST of Carg27565 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 105.9 bits (263), Expect = 5.5e-23
Identity = 86/302 (28.48%), Postives = 144/302 (47.68%), Query Frame = 0


Query: 5   NLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQLPLSL 64
           ++LH  ++  + T  C  +D  +GGG++C  +TEI    G GKTQ+ +QL    Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNAASLYIHTEFPFPFRRLQQLSQA---------------FSSSYPQISNPSD---HI 124
           GGL   ++YI TE  F   R  Q+++A               F ++  Q+  P D   +I
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQM-KPEDILENI 237

Query: 125 FVEPVHSAQQLFDIMPKIESFLA-NRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSA 184
           F   V S  +   ++  +E F++ N+D     +++++DSI   FR D+D    DL +R+ 
Sbjct: 238 FYFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTR 297

Query: 185 LFFKISGKLKLLAKRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGI 244
           +  +++ K   LAK++SLAVVL NQV      S+G   L +               ALG 
Sbjct: 298 VLSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEGSFQLAL---------------ALGD 357

Query: 245 AWANCVNSRLFLSRNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQ 288
           +W++   +R+ L  N      GD              R+ ++  +P LP +S  Y +  +
Sbjct: 358 SWSHSCTNRVILYWN------GD-------------ERYAYIDKSPSLPSASASYTVTSR 374

[Close]

BLAST of Carg27565 vs. TAIR 10
Match: AT3G22880.1 (DNA repair (Rad51) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-17
Identity = 59/192 (30.73%), Postives = 99/192 (51.56%), Query Frame = 0


Query: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60
           MT  + L   ++  K T GC  +D  +GGG+  +++TE   E   GKTQL   LC   QL
Sbjct: 93  MTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQL 152

Query: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQISNPSDHIFVEPVHSAQQLFDI 120
           P ++ G N    YI TE  F   R+  +++ F      +    D+I     ++ +  +++
Sbjct: 153 PTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAV---LDNIIYARAYTYEHQYNL 212

Query: 121 MPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLAKR 180
           +      LA + S  P R++++DSI ALFR DF     +L  R     ++  +L  +A+ 
Sbjct: 213 L----LGLAAKMSEEPFRILIVDSIIALFRVDFTGR-GELADRQQKLAQMLSRLIKIAEE 272

Query: 181 YSLAVVLTNQVV 193
           +++AV +TNQV+
Sbjct: 273 FNVAVYMTNQVI 276

The following BLAST results are available for this feature:

BLAST of Carg27565 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020901.1	1.4e-164	100.00	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022938282.1	2.0e-163	99.32	DNA repair protein XRCC3 homolog [Cucurbita moschata]	[more]
XP_022969693.1	1.6e-160	96.93	DNA repair protein XRCC3 homolog [Cucurbita maxima]	[more]
XP_023538317.1	1.0e-159	97.27	DNA repair protein XRCC3 homolog [Cucurbita pepo subsp. pepo]	[more]
KAG6586077.1	1.0e-148	92.49	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Carg27565 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM5	1.9e-97	58.59	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S...	[more]
Q9CXE6	3.3e-36	34.90	DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1	[more]
O43542	2.9e-32	35.34	DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1	[more]
Q08DH8	4.1e-31	34.78	DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1	[more]
O15315	6.2e-27	30.80	DNA repair protein RAD51 homolog 2 OS=Homo sapiens OX=9606 GN=RAD51B PE=1 SV=2	[more]

BLAST of Carg27565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDM2	9.5e-164	99.32	DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P...	[more]
A0A6J1I1Q9	7.5e-161	96.93	DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=...	[more]
A0A0A0LK93	6.2e-147	90.14	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4...	[more]
A0A5A7UPR6	1.8e-146	90.10	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BRJ5	1.8e-146	90.10	DNA repair protein XRCC3 homolog OS=Cucumis melo OX=3656 GN=LOC103492927 PE=4 SV...	[more]

BLAST of Carg27565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57450.1	1.4e-98	58.59	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT5G57450.2	1.4e-98	58.59	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.1	5.5e-23	28.48	RAS associated with diabetes protein 51C	[more]
AT2G45280.2	5.5e-23	28.48	RAS associated with diabetes protein 51C	[more]
AT3G22880.1	3.5e-17	30.73	DNA repair (Rad51) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01874	DNAREPAIRADA	coord: 143..167 score: 19.49 coord: 25..53 score: 41.29
None	No IPR available	PANTHER	PTHR46487	DNA REPAIR PROTEIN XRCC3	coord: 1..292
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 12..288 e-value: 1.6E-42 score: 145.6
IPR016467	DNA recombination and repair protein, RecA-like	PIRSF	PIRSF005856	Rad51	coord: 1..293 e-value: 4.3E-51 score: 171.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 11..292 e-value: 9.1E-63 score: 214.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..288
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 12..191 score: 43.790913
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 17..288 e-value: 3.18212E-82 score: 245.956

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27565-RA	Carg27565-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0071140	resolution of mitotic recombination intermediates
biological_process	GO:0090656	t-circle formation
biological_process	GO:0000722	telomere maintenance via recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033065	Rad51C-XRCC3 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000400	four-way junction DNA binding
molecular_function	GO:0003677	DNA binding