Carg27560 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27560
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr12: 6947024 .. 6947603 (-)
RNA-Seq Expression	Carg27560
Synteny	Carg27560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTTATCCTGACAATTCATGAAGGTAGACCGAGAATGTATACGGTTATGATCAATGACTCAACACATTCGCGCATGTCGAGGCTTAAAGAGGAGTTTATTAAGTAAAGGGTTGAAGGCAACTTCACTATGGAAAGTACTAAGGATAGAGTTTGCATGGCTTTATTTCTTTTGTTCGGTCTTCTAAAAGCTACAAGAATTTCGTAATGTTTTTTCTAGCAAGTTTTCAATGAGACCATTAAATAAAGTATATATATAGAAAGTAGTATTCTTCGTAACAATCTGTATTTTTTTAAAATATAAAATTAGGAACAGTTTTGCAATTAATTCCCAAACCAGTACCTTCTTGATCGGCCATCGCCGCGCCGAACGTGTTGGTCGCGAATTCAAGGATTTCAATCCTTCGCTCACGCCAGATTTCCAGAGACATCAACATAGGTTTGATTTTCGCATGAGGCTTCTTGAGATTCTCGATTAGATTGAGATTCTTTACAGTGTCCGAGAAGGAGAGGTTCAGAGGCCGACGGCATCGCTGATTCCGCCCGAAGCGGAGACGATGCGATTGGGTGAAAGATGA

mRNA sequence

ATGCAAGTTATCCTGACAATTCATGAAGGTAGACCGAGAATGTATACGGTTATGATCAATGACTCAACACATTCGCGCATGTCGAGGCTTAAAGAGGAGTTTATTAAGAACAGTTTTGCAATTAATTCCCAAACCAGTACCTTCTTGATCGGCCATCGCCGCGCCGAACGTGTTGGTCGCGAATTCAAGGATTTCAATCCTTCGCTCACGCCAGATTTCCAGAGACATCAACATAGTGTCCGAGAAGGAGAGGTTCAGAGGCCGACGGCATCGCTGATTCCGCCCGAAGCGGAGACGATGCGATTGGGTGAAAGATGA

Coding sequence (CDS)

ATGCAAGTTATCCTGACAATTCATGAAGGTAGACCGAGAATGTATACGGTTATGATCAATGACTCAACACATTCGCGCATGTCGAGGCTTAAAGAGGAGTTTATTAAGAACAGTTTTGCAATTAATTCCCAAACCAGTACCTTCTTGATCGGCCATCGCCGCGCCGAACGTGTTGGTCGCGAATTCAAGGATTTCAATCCTTCGCTCACGCCAGATTTCCAGAGACATCAACATAGTGTCCGAGAAGGAGAGGTTCAGAGGCCGACGGCATCGCTGATTCCGCCCGAAGCGGAGACGATGCGATTGGGTGAAAGATGA

Protein sequence

MQVILTIHEGRPRMYTVMINDSTHSRMSRLKEEFIKNSFAINSQTSTFLIGHRRAERVGREFKDFNPSLTPDFQRHQHSVREGEVQRPTASLIPPEAETMRLGER

Homology

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BLAST of Carg27560 vs. NCBI nr
Match: KAG7020799.1 (hypothetical protein SDJN02_17487, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 2.8e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MQVILTIHEGRPRMYTVMINDSTHSRMSRLKEEFIKNSFAINSQTSTFLIGHRRAERVGR 60
           MQVILTIHEGRPRMYTVMINDSTHSRMSRLKEEFIKNSFAINSQTSTFLIGHRRAERVGR
Sbjct: 1   MQVILTIHEGRPRMYTVMINDSTHSRMSRLKEEFIKNSFAINSQTSTFLIGHRRAERVGR 60

Query: 61  EFKDFNPSLTPDFQRHQHSVREGEVQRPTASLIPPEAETMRLGER 106
           EFKDFNPSLTPDFQRHQHSVREGEVQRPTASLIPPEAETMRLGER
Sbjct: 61  EFKDFNPSLTPDFQRHQHSVREGEVQRPTASLIPPEAETMRLGER 105

The following BLAST results are available for this feature:

BLAST of Carg27560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020799.1	2.8e-51	100.00	hypothetical protein SDJN02_17487, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg27560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27560-RA	Carg27560-RA	mRNA