Carg27475 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27475
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	binding partner of ACD11 1-like
Location	Carg_Chr20: 4809688 .. 4812146 (+)
RNA-Seq Expression	Carg27475
Synteny	Carg27475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGGTATTCAATTTTTGTTTATTTTTTATGTTCGTTGTCTTCACTATCTGTTTGATTTCTGGCCATGTTATTTTCCGAAATTTTCATTCTGTTCTTGGGCGTGATTACTACTTGTTATCACTTAGGATTGAAGAAACGATCAGTTTGTTTCATTTTTTTTCCTCTGTGGTTTTTTATGAACGAATGCGTGAATTCGTATTGAGGAGATGGAGAATGTGTACCTCCGGTGTCGTAATTTCATAATACTGGAATTTCGGAAGCACCGAAACCGTCGAAATTCTTCTTTGATTTTGGTTACTTTTGTGTAATCGTTACAGTTTCTTTGTTTTGTTTATGGTGGTTGCAGATGCGAACGGTGAGAGTTACAAATGTTTCCTTGGGCGCGACGGAGAAAAATTTGAGAGAATTTTTTTCTTTCTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGTAAGATTGATCTACTAATGTCTCTAAATTGTACTTCGTCTGTTTTTTTAGTTCGATTGGAAACTGGTGATGAGCAGTGGAATTCTTGATCTTGTTTCTTCTCTTCATTTTGTTCTCCAACTGTTTTTCCATATGCATTTTCATTTATTTTCCTTTGTTTTCTTCTAGGGACAATGAGCAATTTCAAGTTGCATTTGTTACCTTCAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGTCCAAACCATTCTCTATTCTTCTCTTTCTTGATTTCGATTGTCTTTCTTCTTGGTCAGTAGATCATCTGAATGATTTTATTTTTAGTGTTCTTATGCATTTAAAGTTTCATCAGAAATCGTTTCCGGCAAGTAGAAATTCTCTTCTGTTATGAAATCTGGCTCCAAGAAATGATATGTTTTGGAAATTACTTAGAACAGAGTTTTATTCTTCAGAAAAGAGAAGATTTAACAAGTTCAACTATTCAATATGGTTGCATAATGTGTTCAGTCGCTTTTGAATGCGTAGATGAATAGTTAAATTCTTTCTCATACATCTAAGATCGAAAAATACTTTAGTTCTTTCTCTCTCATTAAATAATCCCTCGGCTACCTCGACTGACCGACCGAGAAAAGAAAGTGAAAGAGACTTCTTTCATTCATATGGATTTTGATTTTTCTGCATGTATCCATGGAGATAATTCTCACATCTTTGTTGAAAAATTCTTTTGTAATTCCTTACTTAAGCATTCAGTATCCTTAAGTAAATACCGAGTCTCCGCCTACACAAGAAAATTGTTGATAAAACTCCAAAATGACACTTCTCTTCCATTTTTTTTTTCTCCTTATCATTCAGAAAAGACAAAAAAAATTCTATAGTAGCAAACATTCTAGAGAATTTCTCTTAGATTTGAATCCACAGCTGACGATAGAACTATAATAGATATCTATTATCGGTTTCCTACTCACACGAGCCCATATCCTTGCTTATGTTAACTTTTCCTAGAAGAAATTTGTGATAGAGGCTTTTTCTTGTTTCATCAACGAGAATTGGCCCTCTATCATCGATCGGGTGAGAGGAAAGTGACCTGTGATCTTACCTGACTAACTGTTTTGTGTCTCTCAGGGAGCTACAATTGTTGATCAACCTATAAGCATTGTTTCTGCACCAGATTATAACCTTCCTGCTGTTGCTGCCAGTGACCCTCCAGCAGCGTCCGCTCCAGTATTTTCGATCTTTACCCTTAGCAGTATTTTCGATCTCGTTACTTCAAATCCTGACATGAATGAATGAATAATCATGTTTCAGCAGGCTACAGAGAACACAGGCGCTGAAACTGCTGGAACTGCTGGAACTACTGGAACTACTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTTAGCAGCATGCTGGCCAAAGGGTTCATTTTGGGCAAAGATGCGCTCAATAGGGCGAAGTCTTTCGATGAGAGGCACCGGTTGACTTCGACAGCCTCATTGAAAGTCGCTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAAATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAGAGAAATGGATGAGAAGTTTCAAGTGTCCGAGAAAACCAAGGCGGCAGTGAACAATGCAGGATCAGCCATAATGACTAACCGCTATGTCTCGACCGGGGCTTCGTGGGTTTCCCAGACGTTTCAAAGAGTCGCGAAAGCAGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGATGTTAGCTGAGGATCAACAAGGGAAACATGGGACTCCAAATGTGAAGCCGTGAGCATCCCAATGTTTGGCCAAAAACAATGTGAGGACCAATTCTTAGCTTGCTCTACTTTCATCTCAGTTTAGTATTAGGGAGTGCGTACACACAAATAAGCTTACATTACATGCTTATGTTGTAATTCAACCATATGAAAACCATTTATGCTATGTGATAAAGAATCCATGAATGAAAAAAAAAGAGCTATTT

mRNA sequence

ATGGCGGTTGTTTCTTTGTTTTGTTTATGGTGGTTGCAGATGCGAACGGTGAGAGTTACAAATGTTTCCTTGGGCGCGACGGAGAAAAATTTGAGAGAATTTTTTTCTTTCTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAGCAATTTCAAGTTGCATTTGTTACCTTCAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAACCTATAAGCATTGTTTCTGCACCAGATTATAACCTTCCTGCTGTTGCTGCCAGTGACCCTCCAGCAGCGTCCGCTCCACAGGCTACAGAGAACACAGGCGCTGAAACTGCTGGAACTGCTGGAACTACTGGAACTACTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTTAGCAGCATGCTGGCCAAAGGGTTCATTTTGGGCAAAGATGCGCTCAATAGGGCGAAGTCTTTCGATGAGAGGCACCGGTTGACTTCGACAGCCTCATTGAAAGTCGCTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAAATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAGAGAAATGGATGAGAAGTTTCAAGTGTCCGAGAAAACCAAGGCGGCAGTGAACAATGCAGGATCAGCCATAATGACTAACCGCTATGTCTCGACCGGGGCTTCGTGGGTTTCCCAGACGTTTCAAAGAGTCGCGAAAGCAGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGATGTTAGCTGAGGATCAACAAGGGAAACATGGGACTCCAAATGTGAAGCCGTGAGCATCCCAATGTTTGGCCAAAAACAATGTGAGGACCAATTCTTAGCTTGCTCTACTTTCATCTCAGTTTAGTATTAGGGAGTGCGTACACACAAATAAGCTTACATTACATGCTTATGTTGTAATTCAACCATATGAAAACCATTTATGCTATGTGATAAAGAATCCATGAATGAAAAAAAAAGAGCTATTT

Coding sequence (CDS)

ATGGCGGTTGTTTCTTTGTTTTGTTTATGGTGGTTGCAGATGCGAACGGTGAGAGTTACAAATGTTTCCTTGGGCGCGACGGAGAAAAATTTGAGAGAATTTTTTTCTTTCTCCGGTGAAATTGAATTTGTCGAAATGCGAAAGGACAATGAGCAATTTCAAGTTGCATTTGTTACCTTCAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAACCTATAAGCATTGTTTCTGCACCAGATTATAACCTTCCTGCTGTTGCTGCCAGTGACCCTCCAGCAGCGTCCGCTCCACAGGCTACAGAGAACACAGGCGCTGAAACTGCTGGAACTGCTGGAACTACTGGAACTACTGGATCTGCAATGCAAAAGGCAGAGGATGTTGTTAGCAGCATGCTGGCCAAAGGGTTCATTTTGGGCAAAGATGCGCTCAATAGGGCGAAGTCTTTCGATGAGAGGCACCGGTTGACTTCGACAGCCTCATTGAAAGTCGCTTCTCTGGACCAAAAGATCGGCCTTAGCGAGAAAATTAGCGTTGGCACGACAGTGGTGAATGAGAAAGTGAGAGAAATGGATGAGAAGTTTCAAGTGTCCGAGAAAACCAAGGCGGCAGTGAACAATGCAGGATCAGCCATAATGACTAACCGCTATGTCTCGACCGGGGCTTCGTGGGTTTCCCAGACGTTTCAAAGAGTCGCGAAAGCAGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGATGTTAGCTGAGGATCAACAAGGGAAACATGGGACTCCAAATGTGAAGCCGTGA

Protein sequence

MAVVSLFCLWWLQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKEKMLAEDQQGKHGTPNVKP

Homology

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BLAST of Carg27475 vs. NCBI nr
Match: KAG7010993.1 (Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 502.7 bits (1293), Expect = 2.0e-138
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MAVVSLFCLWWLQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTF 60
           MAVVSLFCLWWLQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTF
Sbjct: 1   MAVVSLFCLWWLQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTF 60

Query: 61  KDPKGAETSILLSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTA 120
           KDPKGAETSILLSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTA
Sbjct: 61  KDPKGAETSILLSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTA 120

Query: 121 GTTGTTGSAMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIG 180
           GTTGTTGSAMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIG
Sbjct: 121 GTTGTTGSAMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIG 180

Query: 181 LSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRV 240
           LSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRV
Sbjct: 181 LSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRV 240

Query: 241 AKAAVDVSQKTKEKMLAEDQQGKHGTPNVKP 272
           AKAAVDVSQKTKEKMLAEDQQGKHGTPNVKP
Sbjct: 241 AKAAVDVSQKTKEKMLAEDQQGKHGTPNVKP 271

[Close]

BLAST of Carg27475 vs. NCBI nr
Match: XP_022943431.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 468.8 bits (1205), Expect = 3.2e-128
Identity = 257/263 (97.72%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETA---GTAGTTGTTGS 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETA   GT GTTGTTGS
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTTGTTGTTGTTGS 120

Query: 132 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 191
           AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 180

Query: 192 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 251
           TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS
Sbjct: 181 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 240

Query: 252 QKTKEKMLAEDQQGKHGTPNVKP 272
           QKTKEKMLAEDQQGKHGTPNVKP
Sbjct: 241 QKTKEKMLAEDQQGKHGTPNVKP 263

[Close]

BLAST of Carg27475 vs. NCBI nr
Match: KAG6571186.1 (Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 467.6 bits (1202), Expect = 7.2e-128
Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQ 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP ATENTGAETAGT GTTGTTGSAMQ
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP-ATENTGAETAGTTGTTGTTGSAMQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV
Sbjct: 121 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 180

Query: 192 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 251
           VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT
Sbjct: 181 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 240

Query: 252 KEKMLAEDQQGKHGTPNVKP 272
           KEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KEKMLAEDQQGKHGTPNVKP 259

[Close]

BLAST of Carg27475 vs. NCBI nr
Match: XP_022986587.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 464.2 bits (1193), Expect = 8.0e-127
Identity = 253/260 (97.31%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQ 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQA ENTGAETA TAGTTGTTGSAMQ
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQAAENTGAETAETAGTTGTTGSAMQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDALNRAKSFDERH+LT TAS KVASLDQKIGLSEKISVGTTV
Sbjct: 121 KAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSEKISVGTTV 180

Query: 192 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 251
           VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT
Sbjct: 181 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 240

Query: 252 KEKMLAEDQQGKHGTPNVKP 272
           KEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KEKMLAEDQQGKHGTPNVKP 260

[Close]

BLAST of Carg27475 vs. NCBI nr
Match: XP_022943432.1 (binding partner of ACD11 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 462.2 bits (1188), Expect = 3.0e-126
Identity = 256/263 (97.34%), Postives = 257/263 (97.72%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETA---GTAGTTGTTGS 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP ATENTGAETA   GT GTTGTTGS
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP-ATENTGAETAGTTGTTGTTGTTGS 120

Query: 132 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 191
           AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 180

Query: 192 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 251
           TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS
Sbjct: 181 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 240

Query: 252 QKTKEKMLAEDQQGKHGTPNVKP 272
           QKTKEKMLAEDQQGKHGTPNVKP
Sbjct: 241 QKTKEKMLAEDQQGKHGTPNVKP 262

[Close]

BLAST of Carg27475 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.1e-60
Identity = 135/254 (53.15%), Postives = 185/254 (72.83%), Query Frame = 0


Query: 13  QMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILL 72
           Q+R+V+V N+S GATE +++EFFSFSGE+E ++++ +      A+VTFK+ +GAET++LL
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLL 63

Query: 73  SGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQA-TENTGAETAGTAGTTGTTGSAMQ 132
           SGA+I DQ + I  AP+Y+ PA          AP A T+++GAE            S +Q
Sbjct: 64  SGASIADQSVIIELAPNYSPPA----------APHAETQSSGAE------------SVVQ 123

Query: 133 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 192
           KAEDVVSSMLAKGFILGKDA+ +AK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT++
Sbjct: 124 KAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSL 183

Query: 193 VNEKVREMDEKFQVSEKTKA-------AVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 252
           VNEK++ +D+ FQV+E+TK+        V++AGSA+M NRYV TG SW +  F RVA+AA
Sbjct: 184 VNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAA 232

Query: 253 VDVSQKTKEKMLAE 259
            +V QKTKEK+ AE
Sbjct: 244 GEVGQKTKEKVEAE 232

[Close]

BLAST of Carg27475 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.6e-06
Identity = 58/234 (24.79%), Postives = 103/234 (44.02%), Query Frame = 0


Query: 17  VRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSGAT 76
           V VTN+S   TEK + +FFSF G++  +   K  E  Q A + F+ P   +T++LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGET-QTAKIQFERPSATKTALLLQDAL 64

Query: 77  IVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQKAED- 136
           +    I I S                       E+ GA +    G  G   +A Q+ +  
Sbjct: 65  LGQNKIQITS-----------------------EDGGAASTTDQGGAGGDQAARQEDKPR 124

Query: 137 --VVSSMLAKGFILGKDALNRAKSFDERHRLTST-ASLKVASLDQKIGLSEKISVGTTVV 196
             ++S +L++G+ L    L ++   D+ + ++S    +  ++L     ++E+       V
Sbjct: 125 SAIISELLSRGYHLSDVTLEKSIQLDQSYGVSSKFKGILESALSGVRSVNERYH-----V 184

Query: 197 NEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVD 247
            EK  E+D KF +S+K    +N   S + T  + +   +  +   Q+V  A  D
Sbjct: 185 TEKANEVDNKFAISDK----LNRTSSLVSTYFHKALETAAGTSAGQKVQNAYED 205

[Close]

BLAST of Carg27475 vs. ExPASy TrEMBL
Match: A0A6J1FRP4 (binding partner of ACD11 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448198 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.6e-128
Identity = 257/263 (97.72%), Postives = 258/263 (98.10%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETA---GTAGTTGTTGS 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETA   GT GTTGTTGS
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTTGTTGTTGTTGS 120

Query: 132 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 191
           AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 180

Query: 192 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 251
           TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS
Sbjct: 181 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 240

Query: 252 QKTKEKMLAEDQQGKHGTPNVKP 272
           QKTKEKMLAEDQQGKHGTPNVKP
Sbjct: 241 QKTKEKMLAEDQQGKHGTPNVKP 263

[Close]

BLAST of Carg27475 vs. ExPASy TrEMBL
Match: A0A6J1J7Z5 (binding partner of ACD11 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484286 PE=4 SV=1)

HSP 1 Score: 464.2 bits (1193), Expect = 3.9e-127
Identity = 253/260 (97.31%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQ 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQA ENTGAETA TAGTTGTTGSAMQ
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQAAENTGAETAETAGTTGTTGSAMQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDALNRAKSFDERH+LT TAS KVASLDQKIGLSEKISVGTTV
Sbjct: 121 KAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSEKISVGTTV 180

Query: 192 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 251
           VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT
Sbjct: 181 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 240

Query: 252 KEKMLAEDQQGKHGTPNVKP 272
           KEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KEKMLAEDQQGKHGTPNVKP 260

[Close]

BLAST of Carg27475 vs. ExPASy TrEMBL
Match: A0A6J1FT10 (binding partner of ACD11 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448198 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126
Identity = 256/263 (97.34%), Postives = 257/263 (97.72%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETA---GTAGTTGTTGS 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP ATENTGAETA   GT GTTGTTGS
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP-ATENTGAETAGTTGTTGTTGTTGS 120

Query: 132 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 191
           AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG
Sbjct: 121 AMQKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVG 180

Query: 192 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 251
           TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS
Sbjct: 181 TTVVNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVS 240

Query: 252 QKTKEKMLAEDQQGKHGTPNVKP 272
           QKTKEKMLAEDQQGKHGTPNVKP
Sbjct: 241 QKTKEKMLAEDQQGKHGTPNVKP 262

[Close]

BLAST of Carg27475 vs. ExPASy TrEMBL
Match: A0A6J1JGG3 (binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484286 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.6e-125
Identity = 252/260 (96.92%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + MRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL
Sbjct: 1   MAMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQ 131
           LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP A ENTGAETA TAGTTGTTGSAMQ
Sbjct: 61  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAP-AAENTGAETAETAGTTGTTGSAMQ 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDALNRAKSFDERH+LT TAS KVASLDQKIGLSEKISVGTTV
Sbjct: 121 KAEDVVSSMLAKGFILGKDALNRAKSFDERHQLTWTASSKVASLDQKIGLSEKISVGTTV 180

Query: 192 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 251
           VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT
Sbjct: 181 VNEKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKT 240

Query: 252 KEKMLAEDQQGKHGTPNVKP 272
           KEKMLAEDQQGKHGTPNVKP
Sbjct: 241 KEKMLAEDQQGKHGTPNVKP 259

[Close]

BLAST of Carg27475 vs. ExPASy TrEMBL
Match: A0A0A0LRG1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 7.6e-99
Identity = 210/251 (83.67%), Postives = 223/251 (88.84%), Query Frame = 0


Query: 15  RTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILLSG 74
           RTVRVTNVSL ATEK+LR+FFSFSGEIEFVEMR DNE+ Q+AFVTFKD KGAETSILLSG
Sbjct: 4   RTVRVTNVSLSATEKDLRDFFSFSGEIEFVEMRNDNERSQLAFVTFKDSKGAETSILLSG 63

Query: 75  ATIVDQPISIVSAPDYNLPAVAASDPPAAS-APQATENTGAETAGTAGTTGTTGSAMQKA 134
           ATIVDQP+SI SAPDYNLPAV AS P A   +  A +NT      T+ T  T GSAMQKA
Sbjct: 64  ATIVDQPVSISSAPDYNLPAVDASAPVAVPVSTPALDNT------TSTTNSTAGSAMQKA 123

Query: 135 EDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTVVN 194
           EDVVSSMLAKGF LGKDALN+AKSFDERH+LTSTAS KVASLDQKIGLSEKISVGTTVVN
Sbjct: 124 EDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVN 183

Query: 195 EKVREMDEKFQVSEKTKAAVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAAVDVSQKTKE 254
           EKVREMDEKFQVSEKTKAAV+NAGSAIMTNRYV TGASWVSQTFQRVAKAAVDVSQKTKE
Sbjct: 184 EKVREMDEKFQVSEKTKAAVSNAGSAIMTNRYVLTGASWVSQTFQRVAKAAVDVSQKTKE 243

Query: 255 KMLAEDQQGKH 265
           K+LAE+ QGKH
Sbjct: 244 KVLAEEDQGKH 248

[Close]

BLAST of Carg27475 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 248.1 bits (632), Expect = 8.4e-66
Identity = 142/259 (54.83%), Postives = 192/259 (74.13%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + M TV+V+NVSLGAT+++L+EFFSFSG+I ++E + + E+ ++A+VTFKD +GAET++L
Sbjct: 1   MTMTTVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQ 131
           LSGATIVD  + +  APDY L       P A ++ +  ++  +  AG         S ++
Sbjct: 61  LSGATIVDSSVIVSMAPDYQL------SPEALASLEPKDSNKSPKAG--------DSVLR 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVSSMLAKGFILGKDA+ +AKS DE+H+LTSTAS KVAS D+KIG ++KI+ GT V
Sbjct: 121 KAEDVVSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVV 180

Query: 192 VNEKVREMDEKFQVSEKTKAA-------VNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 251
           V EKVRE+D+K+QVSEKTK+A       V+NAGSAIM NRYV TGA+WV+  F +VAKAA
Sbjct: 181 VGEKVREVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAA 240

Query: 252 VDVSQKTKEKMLAEDQQGK 264
            +V QK KEK+   +++ K
Sbjct: 241 EEVGQKAKEKVGMAEEEDK 245

[Close]

BLAST of Carg27475 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-63
Identity = 136/258 (52.71%), Postives = 196/258 (75.97%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + M TV+V+NVSL ATE++L+EFFSFSG+I ++E + +N+  ++A+VTFKD +GAET++L
Sbjct: 1   MSMVTVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQATENTGAETAGTAGTTGTTGSAMQ 131
           L+G+TIVD  +++  +PDY LP      P A ++ ++ +    E+  ++  T    S  +
Sbjct: 61  LTGSTIVDSSVTVTMSPDYQLP------PDALASIESLK----ESNKSSSPTREDVSVFR 120

Query: 132 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 191
           KAEDVVS M++KGF+LGKDA+ +AKS DE+H+LTSTAS +V S D++IG +EKI+ GTTV
Sbjct: 121 KAEDVVSGMISKGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTV 180

Query: 192 VNEKVREMDEKFQVSEKTKAA-------VNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 251
           V+EKV+E+D+KFQV+EKTK+A       V+NAGSAIM NRYV TGA+WV+  F RV+KAA
Sbjct: 181 VSEKVKEVDQKFQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAA 240

Query: 252 VDVSQKTKEKM-LAEDQQ 262
            +V QK KEK+ LAE+++
Sbjct: 241 EEVGQKAKEKVGLAEEEE 248

[Close]

BLAST of Carg27475 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 236.1 bits (601), Expect = 3.3e-62
Identity = 137/254 (53.94%), Postives = 186/254 (73.23%), Query Frame = 0


Query: 13  QMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILL 72
           Q+R+V+V N+S GATE +++EFFSFSGE+E ++++  NE    A+VTFK+ +GAET++LL
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNE--HSAYVTFKETQGAETAVLL 63

Query: 73  SGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQA-TENTGAETAGTAGTTGTTGSAMQ 132
           SGA+I DQ + I  AP+Y+ PA          AP A T+++GAE            S +Q
Sbjct: 64  SGASIADQSVIIELAPNYSPPA----------APHAETQSSGAE------------SVVQ 123

Query: 133 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 192
           KAEDVVSSMLAKGFILGKDA+ +AK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT++
Sbjct: 124 KAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSL 183

Query: 193 VNEKVREMDEKFQVSEKTKA-------AVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 252
           VNEK++ +D+ FQV+E+TK+        V++AGSA+M NRYV TG SW +  F RVA+AA
Sbjct: 184 VNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAA 233

Query: 253 VDVSQKTKEKMLAE 259
            +V QKTKEK+ AE
Sbjct: 244 GEVGQKTKEKVEAE 233

[Close]

BLAST of Carg27475 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-61
Identity = 135/254 (53.15%), Postives = 185/254 (72.83%), Query Frame = 0


Query: 13  QMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSILL 72
           Q+R+V+V N+S GATE +++EFFSFSGE+E ++++ +      A+VTFK+ +GAET++LL
Sbjct: 4   QVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVLL 63

Query: 73  SGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQA-TENTGAETAGTAGTTGTTGSAMQ 132
           SGA+I DQ + I  AP+Y+ PA          AP A T+++GAE            S +Q
Sbjct: 64  SGASIADQSVIIELAPNYSPPA----------APHAETQSSGAE------------SVVQ 123

Query: 133 KAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTTV 192
           KAEDVVSSMLAKGFILGKDA+ +AK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT++
Sbjct: 124 KAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSL 183

Query: 193 VNEKVREMDEKFQVSEKTKA-------AVNNAGSAIMTNRYVSTGASWVSQTFQRVAKAA 252
           VNEK++ +D+ FQV+E+TK+        V++AGSA+M NRYV TG SW +  F RVA+AA
Sbjct: 184 VNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAA 232

Query: 253 VDVSQKTKEKMLAE 259
            +V QKTKEK+ AE
Sbjct: 244 GEVGQKTKEKVEAE 232

[Close]

BLAST of Carg27475 vs. TAIR 10
Match: AT5G16840.3 (binding partner of acd11 1 )

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-60
Identity = 134/255 (52.55%), Postives = 185/255 (72.55%), Query Frame = 0


Query: 12  LQMRTVRVTNVSLGATEKNLREFFSFSGEIEFVEMRKDNEQFQVAFVTFKDPKGAETSIL 71
           + +R+V+V N+S GATE +++EFFSFSGE+E ++++ +      A+VTFK+ +GAET++L
Sbjct: 1   MAVRSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS---AYVTFKETQGAETAVL 60

Query: 72  LSGATIVDQPISIVSAPDYNLPAVAASDPPAASAPQA-TENTGAETAGTAGTTGTTGSAM 131
           LSGA+I DQ + I  AP+Y+ PA          AP A T+++GAE            S +
Sbjct: 61  LSGASIADQSVIIELAPNYSPPA----------APHAETQSSGAE------------SVV 120

Query: 132 QKAEDVVSSMLAKGFILGKDALNRAKSFDERHRLTSTASLKVASLDQKIGLSEKISVGTT 191
           QKAEDVVSSMLAKGFILGKDA+ +AK+FDE+H  TSTA+  VASLDQKIGLS+K++ GT+
Sbjct: 121 QKAEDVVSSMLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTS 180

Query: 192 VVNEKVREMDEKFQVSEKTKA-------AVNNAGSAIMTNRYVSTGASWVSQTFQRVAKA 251
           +VNEK++ +D+ FQV+E+TK+        V++AGSA+M NRYV TG SW +  F RVA+A
Sbjct: 181 LVNEKIKAVDQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQA 230

Query: 252 AVDVSQKTKEKMLAE 259
           A +V QKTKEK+ AE
Sbjct: 241 AGEVGQKTKEKVEAE 230

The following BLAST results are available for this feature:

BLAST of Carg27475 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010993.1	2.0e-138	100.00	Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022943431.1	3.2e-128	97.72	binding partner of ACD11 1-like isoform X1 [Cucurbita moschata]	[more]
KAG6571186.1	7.2e-128	98.46	Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986587.1	8.0e-127	97.31	binding partner of ACD11 1-like isoform X1 [Cucurbita maxima]	[more]
XP_022943432.1	3.0e-126	97.34	binding partner of ACD11 1-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg27475 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	5.1e-60	53.15	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	5.6e-06	24.79	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Carg27475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRP4	1.6e-128	97.72	binding partner of ACD11 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1J7Z5	3.9e-127	97.31	binding partner of ACD11 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1FT10	1.5e-126	97.34	binding partner of ACD11 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JGG3	3.6e-125	96.92	binding partner of ACD11 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0LRG1	7.6e-99	83.67	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G437070 PE=4 SV...	[more]

BLAST of Carg27475 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17720.1	8.4e-66	54.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	1.0e-63	52.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	3.3e-62	53.94	binding partner of acd11 1	[more]
AT5G16840.1	3.6e-61	53.15	binding partner of acd11 1	[more]
AT5G16840.3	1.4e-60	52.55	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..85 e-value: 1.5E-8 score: 44.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..80 e-value: 4.5E-8 score: 32.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..89 score: 12.048673
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..85 e-value: 3.7E-11 score: 44.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..271
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 13..264
None	No IPR available	PANTHER	PTHR32343:SF37	BINDING PARTNER OF ACD11 1	coord: 13..264
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 14..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27475-RA	Carg27475-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding