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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAGCATTCTGGTGGCCACCCAAGGCCTGAGAGCTAAAGAATTTACGTCGACAGTAATTGCAAGAGAACATCCTGGGGTTTGTTGGGCCAGAAACATGGCCAACTGCTTCACTACTAGTCTCACCACTACCATTTGCGTCGACATCATTTGGGTTGAAATGAAGTGTCAAGTCAACAGAAACCAAACCTTGATTGGTATTACCTTTTATCGAGTTGGTGAGGCAGGAGGTACTACTACTGTCCTTCGAGGGATTAGAGGTTGCTTCAGGTACAGCCATGTCAGAAGCAGCTTGGGTGCTCACTTCTGAATCTTCTTCCCGTTCCAAATTCAACTTTGGTGATTGCATATTGGAAATAGGATTTAGAATTAGACGGTTGATTATTCGGTTGACAATAGGAAACGCCAAATAAGTCGATGTTGGCTGTCACTCATGTAAATAACCTGCATAAACAATGAAAGCTTAATCTAATGCAACTTATGAGAATTCCTTAAAAAAATTCCTTTAAACTTTTTTAAAAAGTTCAAAAAACTTCATATTGTTAGTATATAAGCGTCAATACCACATTGCAAAAATACTCATGTCCTTCAACCTTTTAAAAAGGAAGTTTAAAGAAGTTCTTACCATTAGTCATAAGTGGCAAAACAGTGCTTATGCAAGGGCTTGTATTATCCCAGGCAGTGCATCTGTTAGTCCGAGATCTCTTGAATTATCCCAAACAAGTTCTTATCGATACTCCTTTTTATACATCAGAAGATCTTCTCAAGTGGAGTTAAATAGCGGCCTCTTGAATTACTTAGCCTACAAAACCTAATACACCATTAGTTAACCTAAACATTATTCTAGTATTCTAGTCTAGCATTAGTTTCCAATCATTTCAAATACTTACTCAACCTTCTACAATGATTGGCATTAAGGAACTCACCATCTTCAATTTTCAACCTAATGAGAATTATTGGTAAATTTGGAAGACCCTCTCTTAGAACAGATAGAAGAAAGGAAACAAAAGGGTCCTGATTCCAAATTCAAGAGAGAAAAACCCCCAGAAAACACAAATTCAAGTACAGAGAAGGACAGAAAATTCCCAAAAATAAAAGAAACAGAAAACAGACACCAGATGAAAGGTTCGCAAAGAAACTGAAATCCCATGAAGCAAAAATCGAGAAAAGAGAAGTAGTTCTTTACCATTTGTGGGCACAAAAATGGGATGTGGGTAGCATGAAGTCTGTAGAGGATTAGAGAGTATTTGTGGAGTAGAGTGTGATGTTAGTACTAGGAAAAGGAAACAGAGACGCACAGACAATTGCATGGATGGTAGTGCTACGAAAGGAGAATAGAGAAGACAGACAGGGGACATATTCTATGGCCCCTTGTCTCTAGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGGCCATTATGGATGGAGCATTACTTCTGATAGCAGCAAATGAAAAGGCTGCCCTCAAACCTCAAACCTCTGAGCACCTTGCTGCTGTTGAAAATTATGGCGCCTTCAACATATATAATCCTCCAGAATAA mRNA sequence ATGAGCATTCTGGTGGCCACCCAAGGCCTGAGAGCTAAAGAATTTACGTCGACAGTAATTGCAAGAGAACATCCTGGGGTTTGTTGGGCCAGAAACATGGCCAACTGCTTCACTACTAGTCTCACCACTACCATTTGCGTCGACATCATTTGGGTTGAAATGAAGTGTCAAGTCAACAGAAACCAAACCTTGATTGGTATTACCTTTTATCGAGTTGGTGAGGCAGGAGGTACTACTACTGTCCTTCGAGGGATTAGAGGTTGCTTCAGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGGCCATTATGGATGGAGCATTACTTCTGATAGCAGCAAATGAAAAGGCTGCCCTCAAACCTCAAACCTCTGAGCACCTTGCTGCTGTTGAAAATTATGGCGCCTTCAACATATATAATCCTCCAGAATAA Coding sequence (CDS) ATGAGCATTCTGGTGGCCACCCAAGGCCTGAGAGCTAAAGAATTTACGTCGACAGTAATTGCAAGAGAACATCCTGGGGTTTGTTGGGCCAGAAACATGGCCAACTGCTTCACTACTAGTCTCACCACTACCATTTGCGTCGACATCATTTGGGTTGAAATGAAGTGTCAAGTCAACAGAAACCAAACCTTGATTGGTATTACCTTTTATCGAGTTGGTGAGGCAGGAGGTACTACTACTGTCCTTCGAGGGATTAGAGGTTGCTTCAGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGGCCATTATGGATGGAGCATTACTTCTGATAGCAGCAAATGAAAAGGCTGCCCTCAAACCTCAAACCTCTGAGCACCTTGCTGCTGTTGAAAATTATGGCGCCTTCAACATATATAATCCTCCAGAATAA Protein sequence MSILVATQGLRAKEFTSTVIAREHPGVCWARNMANCFTTSLTTTICVDIIWVEMKCQVNRNQTLIGITFYRVGEAGGTTTVLRGIRGCFRVTIFLWLPCLMEQAIMDGALLLIAANEKAALKPQTSEHLAAVENYGAFNIYNPPE
Homology
BLAST of Carg27469 vs. NCBI nr
Match: KAG7030542.1 (hypothetical protein SDJN02_04579, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 Query: 1 MSILVATQGLRAKEFTSTVIAREHPGVCWARNMANCFTTSLTTTICVDIIWVEMKCQVNR 60 MSILVATQGLRAKEFTSTVIAREHPGVCWARNMANCFTTSLTTTICVDIIWVEMKCQVNR Sbjct: 1 MSILVATQGLRAKEFTSTVIAREHPGVCWARNMANCFTTSLTTTICVDIIWVEMKCQVNR 60
Query: 61 NQTLIGITFYRVGEAGGTTTVLRGIRGCFRVTIFLWLPCLMEQAIMDGALLLIAANEKAA 120 NQTLIGITFYRVGEAGGTTTVLRGIRGCFRVTIFLWLPCLMEQAIMDGALLLIAANEKAA Sbjct: 61 NQTLIGITFYRVGEAGGTTTVLRGIRGCFRVTIFLWLPCLMEQAIMDGALLLIAANEKAA 120
Query: 121 LKPQTSEHLAAVENYGAFNIYNPPE 146 LKPQTSEHLAAVENYGAFNIYNPPE Sbjct: 121 LKPQTSEHLAAVENYGAFNIYNPPE 145
BLAST of Carg27469 vs. TAIR 10
Match: AT1G04170.1 (eukaryotic translation initiation factor 2 gamma subunit ) HSP 1 Score: 44.7 bits (104), Expect = 7.5e-05 Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0 Query: 104 AIMDGALLLIAANEKAALKPQTSEHLAAVE 134 AIMDGALLLIAANE +PQTSEHLAAVE Sbjct: 143 AIMDGALLLIAANETCP-QPQTSEHLAAVE 171
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7030542.1 | 1.5e-76 | 100.00 | hypothetical protein SDJN02_04579, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
AT1G04170.1 | 7.5e-05 | 83.33 | eukaryotic translation initiation factor 2 gamma subunit | [more] |
Relationships
The following mRNA feature(s) are a part of this gene:
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