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Carg27408 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTGTTTTTAGGGATCGAAAGCGTATAGAGGATGGCCTGCAGAGGGTGCTTTGAGTGCCTGTTGAAGCTTCTGAACTTCTTCTTATCCCTTCTGGGTCTTGCCATGGTGGGGTATGGGATTTACTTGTTGGTTGAGTACTTGCAATCTCCTAGTGATATCCCAAGACCTCCGTTGAGTGGTGATCACGATCTGGTCCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAACATCTTTGATCACCTTCCAAAAGCCTGGTATGACTTTTCCTTTTAAATATAATATGTATGTTTCTTACTGCTTGTAATGGCTGACTCTAGGCAGAACAAATATTCTGAAAAATAAAGGATATTGAGCTTCATAGGTAACTCATTGATTTGGTGGTCATGTTTCCTACCCCTAGGTCAGAAGTTCGATCCCCATCGTGCCCTTCCCCCCAATTCCTGTTGTAAGAATAAGATAACCTCTCAATTTTTTAGAAAAAAAAGAAAAGAAAAGAAAAGAAAAAGAAGGAATGAGAGGTACATGATTAACGTCATGATGTGATGAAGTTTATGAAGCAGCTGAATTATGGATTCACTCGTTGAAGATAAAAAATTTATGAATTTCCTAAACATTCTACAATATTGCTTTATCACTCAGTGTTCTAGAAGTCTCATTTGGTTTTAAGGTTCTATTTGTTTGTTTGGAAACAGTTCAGTTTGCTGTTACAATTGATATTTTCTACTTTTTCAAGAATAACCCGGATGCTCACAAATATTTTAAAAAATAAAAATAAACATACAAAAGGTTGTCTATTTTATCTTTTAACAGCAGAAACGCTTGAAGTGCATCAGTGAATCACAATCGATATTGAATCTATATTGCTAAATGGAAATGTTATCACTTTTCAACTTTTATTCTTATTGCATAATTTCATGGAAACTCGAGCCAGTTTATTGAGAGTCTCATCAAGTATAGGAATTGGTGTACATATTGATTTGCTGTACATTGCATAAGTTACTGCCGAGAATATAAGATATTTCGTACTGAAATAATGATATGCCATTTCAAAAGTACTGGATGTGACATCCTTGTCTCTTCTTCTTCATTTTAAATTTTTTTTGATCTGAAAGGATTCTATTCGGAATCTTCACATGTAAGCAAATTCATGTCATCGGTTAGTACATTTTAGCAGCTTACAATAGTATGGATATTTGTGGCATCTGCTTATTCTGTTTCTTCTATTTTAATTCTTTTGCAGGTTCATATACTTGTTCATTGCTGTGGGAGTCATTATCTTTGTTGTTTCTTGTTTTGGGTGCATTGGAGCTGCAACACGTAATGGATGCTGTTTAAGTTGTGTATCCTATTTGCCTGCATGGCTTCATTGTTGTTTGATTTATGAATTAGTAATGAAACAATTAGGCCACCAGGGAACTTGTTGGCTTCGGGATAACTACACTGTTCATATAGATAAGATGGTGATCTTAAATATAATACAACATAGTCATGATAACACGTACGGTTTAATCTAAAAAAATTGACAGTGATCTCCATTTGAGTTTTATGTTACTGTATCCTTAATTAATGATCACAGTATTCAGTTTTGGTGCTTCTACTGATTTTGGTGCAAGTAGGATGTGCAGCCTTCATATTCTTTGACAAACATTGGAGAGATGTGAGTGGTTCACCTCACAAACTAAAATTGGAATTTTAGTTCATTTTCTTATTATTATTACTGTTATTCCATAGGAAATTCCTGGGGACAAAACAGGAAACTTCGATAAGATCTATGAACTCCTCGAAGACAAGTGGGAAATCATCAGATGGGTTGCACTAGGAGCTGTAATTTTTGAGGTACGTGAACCCCTTTTTGAAGCTTTTGAATCTTAGACTGGCATGGCAGAGGCCTAATGCTGCTCTAACCTCTGAATGTCTTGCTTAGCAGAAATGTTACATGCACTGTAATTACTAAATTACTGGGATCTTCGTTATTTCTAATTCATGTGAATATATAACTTAATTTCGCATAAATATTGAATATTGTTGTAATTGTTTTATTATAGAATATAATAATTATATAATGATTAATAGAATATATCTATAGAAATTTATTATTTAATTATCAAATAGATTTGTATCAATAATTGATGTGTTAATCCCAATTTGGTCCATTTTTGTTTTTGAATTCAAATGACATTTGAAATTCTTTTTCTTTTCTGATTTTTGGTTAATCTTATTTTAGTCTTTTTAGTAATCCACTCTACTGATTGAATTGTATCTTTTTAGTTATCTACTCTTTACTGATTGACTTGTATACCATTCTTTACTATGTTTGTGTGCATTAAACATTGCACTTCTCAAGAAACAGATTGACCTGTTTCTTGCTGCTGAAACTCTGTCATCAAGAATATGTACTTCTACGCCCCTCATCAAATTTTAGGGTTTTTTTTTTTTTCTCCTTTTTGCATCTCTCTTGAATTCTGGTTTAGTGCATTTTTTCCGCCATAGAGTTTCAAACATATGCGGTTGGTAGGTTCTTTAATTCGCAATTTGTGATTTGCAATATAAAATTCATTTTACCCTTTCTCACATCAATAATTTACAAGAATTTGGTTTTTGTTGATCGCCAAAGAAGACTTCATATATAATACTATCAATGGATTGCCCCAACCTTTTCTCCCTAACATATCGATTTGCTTTACTTGCTGTTTTTTCCCTTTATTTGATTTAACAACTTTTGTGCTTTTGGCCTTGAGCCCTACTCTTATCTACTCAAAACTCCCTTCTTTAGATACCAATTTGGCCATCTGGATTTATTTGCTTTACACTGATTGTACGTTCTTTTTTCTCTCATTTGATAATCATTAGAATTTCCAACTTGTAATTTGTGTTTCATTTGTATTTGCAGGCTCATGCCTTTTTCTTCAAGTTGGCTCTATGTGGTGCGCTGCGCAGCAAACAGTCCTGCAGACTATGA TTGTTTTTAGGGATCGAAAGCGTATAGAGGATGGCCTGCAGAGGGTGCTTTGAGTGCCTGTTGAAGCTTCTGAACTTCTTCTTATCCCTTCTGGGTCTTGCCATGGTGGGGTATGGGATTTACTTGTTGGTTGAGTACTTGCAATCTCCTAGTGATATCCCAAGACCTCCGTTGAGTGGTGATCACGATCTGGTCCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAACATCTTTGATCACCTTCCAAAAGCCTGGTTCATATACTTGTTCATTGCTGTGGGAGTCATTATCTTTGTTGTTTCTTGTTTTGGGTGCATTGGAGCTGCAACACTTTTGGTGCTTCTACTGATTTTGGTGCAAGTAGGATGTGCAGCCTTCATATTCTTTGACAAACATTGGAGAGATGAAATTCCTGGGGACAAAACAGGAAACTTCGATAAGATCTATGAACTCCTCGAAGACAAGTGGGAAATCATCAGATGGGTTGCACTAGGAGCTGTAATTTTTGAGGCTCATGCCTTTTTCTTCAAGTTGGCTCTATGTGGTGCGCTGCGCAGCAAACAGTCCTGCAGACTATGA ATGGCCTGCAGAGGGTGCTTTGAGTGCCTGTTGAAGCTTCTGAACTTCTTCTTATCCCTTCTGGGTCTTGCCATGGTGGGGTATGGGATTTACTTGTTGGTTGAGTACTTGCAATCTCCTAGTGATATCCCAAGACCTCCGTTGAGTGGTGATCACGATCTGGTCCAGCTTGGTCGACCAATGCTAATGGCCGTGTCTCTGTCTTCTAACATCTTTGATCACCTTCCAAAAGCCTGGTTCATATACTTGTTCATTGCTGTGGGAGTCATTATCTTTGTTGTTTCTTGTTTTGGGTGCATTGGAGCTGCAACACTTTTGGTGCTTCTACTGATTTTGGTGCAAGTAGGATGTGCAGCCTTCATATTCTTTGACAAACATTGGAGAGATGAAATTCCTGGGGACAAAACAGGAAACTTCGATAAGATCTATGAACTCCTCGAAGACAAGTGGGAAATCATCAGATGGGTTGCACTAGGAGCTGTAATTTTTGAGGCTCATGCCTTTTTCTTCAAGTTGGCTCTATGTGGTGCGCTGCGCAGCAAACAGTCCTGCAGACTATGA MACRGCFECLLKLLNFFLSLLGLAMVGYGIYLLVEYLQSPSDIPRPPLSGDHDLVQLGRPMLMAVSLSSNIFDHLPKAWFIYLFIAVGVIIFVVSCFGCIGAATLLVLLLILVQVGCAAFIFFDKHWRDEIPGDKTGNFDKIYELLEDKWEIIRWVALGAVIFEAHAFFFKLALCGALRSKQSCRL Homology
BLAST of Carg27408 vs. NCBI nr
Match: KAG7011516.1 (Tobamovirus multiplication protein 2A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 372.1 bits (954), Expect = 2.8e-99 Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
BLAST of Carg27408 vs. NCBI nr
Match: XP_023553897.1 (tobamovirus multiplication protein 2A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 322.8 bits (826), Expect = 2.0e-84 Identity = 167/187 (89.30%), Postives = 169/187 (90.37%), Query Frame = 0
BLAST of Carg27408 vs. NCBI nr
Match: XP_022952814.1 (tobamovirus multiplication protein 2A [Cucurbita moschata]) HSP 1 Score: 320.5 bits (820), Expect = 9.8e-84 Identity = 166/187 (88.77%), Postives = 168/187 (89.84%), Query Frame = 0
BLAST of Carg27408 vs. NCBI nr
Match: XP_022971990.1 (tobamovirus multiplication protein 2A-like [Cucurbita maxima] >XP_022971992.1 tobamovirus multiplication protein 2A-like [Cucurbita maxima]) HSP 1 Score: 320.5 bits (820), Expect = 9.8e-84 Identity = 165/187 (88.24%), Postives = 169/187 (90.37%), Query Frame = 0
BLAST of Carg27408 vs. NCBI nr
Match: XP_022931040.1 (tobamovirus multiplication protein 2A-like [Cucurbita moschata] >KAG7036173.1 Tobamovirus multiplication protein 2A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81 Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy Swiss-Prot
Match: Q9C5W7 (Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana OX=3702 GN=TOM2A PE=1 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 5.2e-56 Identity = 111/188 (59.04%), Postives = 137/188 (72.87%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy Swiss-Prot
Match: Q93XY5 (Tetraspanin-18 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH2 PE=1 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15 Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy Swiss-Prot
Match: Q9SVU4 (Tetraspanin-20 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH1 PE=1 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13 Identity = 56/219 (25.57%), Postives = 101/219 (46.12%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy Swiss-Prot
Match: Q940P5 (Tetraspanin-19 OS=Arabidopsis thaliana OX=3702 GN=TOM2AH3 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 5.5e-13 Identity = 47/181 (25.97%), Postives = 87/181 (48.07%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy TrEMBL
Match: A0A6J1I3F8 (tobamovirus multiplication protein 2A-like OS=Cucurbita maxima OX=3661 GN=LOC111470643 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 4.7e-84 Identity = 165/187 (88.24%), Postives = 169/187 (90.37%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy TrEMBL
Match: A0A6J1GMT3 (tobamovirus multiplication protein 2A OS=Cucurbita moschata OX=3662 GN=LOC111455402 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 4.7e-84 Identity = 166/187 (88.77%), Postives = 168/187 (89.84%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy TrEMBL
Match: A0A6J1EYE4 (tobamovirus multiplication protein 2A-like OS=Cucurbita moschata OX=3662 GN=LOC111437351 PE=4 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 5.8e-82 Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy TrEMBL
Match: A0A6J1K6M6 (tobamovirus multiplication protein 2A-like OS=Cucurbita maxima OX=3661 GN=LOC111491627 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 1.7e-81 Identity = 160/189 (84.66%), Postives = 168/189 (88.89%), Query Frame = 0
BLAST of Carg27408 vs. ExPASy TrEMBL
Match: A0A5A7T8L3 (Tobamovirus multiplication protein 2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G00630 PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 8.6e-78 Identity = 154/189 (81.48%), Postives = 165/189 (87.30%), Query Frame = 0
BLAST of Carg27408 vs. TAIR 10
Match: AT1G32400.1 (tobamovirus multiplication 2A ) HSP 1 Score: 218.8 bits (556), Expect = 3.7e-57 Identity = 111/188 (59.04%), Postives = 137/188 (72.87%), Query Frame = 0
BLAST of Carg27408 vs. TAIR 10
Match: AT1G32400.2 (tobamovirus multiplication 2A ) HSP 1 Score: 218.8 bits (556), Expect = 3.7e-57 Identity = 111/188 (59.04%), Postives = 137/188 (72.87%), Query Frame = 0
BLAST of Carg27408 vs. TAIR 10
Match: AT1G32400.3 (tobamovirus multiplication 2A ) HSP 1 Score: 218.8 bits (556), Expect = 3.7e-57 Identity = 111/188 (59.04%), Postives = 137/188 (72.87%), Query Frame = 0
BLAST of Carg27408 vs. TAIR 10
Match: AT2G20230.1 (Tetraspanin family protein ) HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16 Identity = 57/199 (28.64%), Postives = 95/199 (47.74%), Query Frame = 0
BLAST of Carg27408 vs. TAIR 10
Match: AT4G28770.1 (Tetraspanin family protein ) HSP 1 Score: 78.2 bits (191), Expect = 7.9e-15 Identity = 56/219 (25.57%), Postives = 101/219 (46.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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