Carg27331 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27331
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein DCL homolog, chloroplastic-like
Location	Carg_Chr09: 996609 .. 1000054 (+)
RNA-Seq Expression	Carg27331
Synteny	Carg27331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGCGGATTGAAGAGAAATATTGTAGAATCTCCAAAACCATGAGATTGATGATAATGTGAGTCACCATTAACAGTTATTTTTCCTCCGTTTTCTAAGGGAATTGGGTGAAAAACCTCAGTAGTTGCAAATTTGAGCTCCTTGATTCAATTGAACAAGGGCATGGTCCTGGCTATGGCCTCCATTTTGAAGCCACCGCCTCTTGTGCCCCTTCACTCCCTAAATCCAAACCTCCTCAACGCTTCACCAGTGATCGTATGTTTTCGTACGCACCCCATGACGTCGTTTCACCCATCCATTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGGATTCGAAGCCACGAAGAATATAGTTCCGATTTGCTGCGAAAACCGGTTGTGCCGCCGGCGATGGACCTGGCTACACCATCGGAGGATTACAGCAGCAGTGAGGAGAGTGGAAACGGAGACGAGGAGGAAGAGGAATGGGTTGACTGGGAGGACAGGATTCTGGAGGAGACTGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAGTAAGCAACCATTCGTTTGTTTATCGGCTTTTTAACTGAATTTGAGCTTCCAGGCAACTAGAAACCATGCAACCATGTTATTAAGTGAATTTTGAGATTGTTATTGCTCAAATGAAAGCGTGTGCTCAAAGATGAACGGAACTAAATAATTTGAGATTGAAATTTTAGAACTTGTACGGAACGTTCATCATTTCCATAGCAAGCAAGAACAACGATGACGAGTTCTCTGTCAATTAATCTCTTCAAAGTTCATTGATCTTTTATTCCATTTGATCAAATTTAATTATAACTTGACGCACTTAAAAGACTTAGAATCTAATAAATTGAAGAGAAAAAGGCTCTTGCAACCGTACACACTCAACCTATGGTCCTTAGCCCATGGATAAGTCAATTGTTAACGTATCTTATTTCTGTTTTCTCATATTTCAACGATCAAGTGTTCGTAACATGTGTATTGTTATCTTTCAGTGAAAGTTTCAAGTTGTTATCATTTAGTATCTCCTTACTGACAAAATTTGAACGTTTTATAGCTGTTTTCTTCCCTTGGATGGATGAGATATCTTGACTGTTTGCTTTGATCTTGTTAATTCACCGATGGTGCACCTATTATCTGAAAGACAATATGTTGTGTCTTGAATTGACTAGCATGGTGTGGTAGAGTTTAATCTCCATTCATTAATCATCTATAAGCCAACATGCGCAGATATGAAAGTGGGGATAGGTTGACCCCAGAGCACGAGAAAACAATTCTTGATCGGTTGCTTTCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGGTATATCTCTTTCCATATTTCTACATGCCTCGTGTTTTTATCTTATTTTTAGAATTTGCATTTATATTAAATAAAATTACTAATGAGATACTCTAGCCTCTTTTCTGTTTCCTTGGATGAATGAAAGCTTTTGTCATGAACCTGGAAAAGAAATTAAATGTTCACAATTAAGTTTTTAATTGCTCCTGATGAAACATCTTGATTATCGCTATTGATGAGATTGACTTCAACAAGTCATGATTCATCCCTGAAACATTTGACTAGCTTAGCTTGTAATCCTAACATATTTGTCTATAATGTTTGACTTGAAAAGATATAAATTGTTACGGAGCAGAACATGAATTAGAAGGGAAAACTTACTTTTCCTAATACACGTGATCTATATCGACTGTGTTTTTTTTTTTTTTTTTTTTTTCCTTTTGTAAAAATACTTTGCCTGGGATTTATATGAAGACACTTCAAAGTAATTCTCAATGTACACAGTGAGAAATGTGGGCTTTGATAAGTGGCAACGGTTTGATATTTGTTGAAACATTGTATTTTCACTAGATGGTGTATACGTGATGCTGCCAAAAGGGTTATACCTCGACTTGAACTCCAATATCTTGCCATTAGAAAAGCGATTTTATGGGATGCCATTTTCATTTTTGAACCATTTTCTTTGAAATCATATTGAGCACTGGATACAAGCTCTGTCTCTGTCAACTTAATCATATTGTTGTGGTCGGCAGATTGGATATCATCCGAATTTTGAAAGGTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAGTTGGTTGATTTTTCATATTGGAAGTGCATGGAGGGTCTGATCAGAAAGAACTATCCTCTTCATGCAGAAAGCTTTATTCTTCGGCATTTTCAGCGACGTAGACGCAATTTTTTTCGGTAACGAATGCAAGATCTGTTAATCATACTATTGTACCATCCAATTTCAGGAATTCTTTGAATTTCGAAGCTTGAAATTAACCTACTACGCTTGTGTGGTTCTCGTGTTTAATGATTTGAAATGCGCGAATCAAGAAGAATATAGGCTGAATGTAGACTCTTGCTCGAGGAAGGTGCTAGCAAAATTCAATATTCGAGCCTAACAGTTACCTCCAGTCCAGTTCTTGCTTAGTCTCTAGTGGTTAACTGGTTAGCTACATTCCCTCGCTCTCTCATTAGCAGGAATATATGCTCAAGATCCTTGAACCTTGTAGCATTTTGTAGTTTGGCCGGTATGTATTAAAACTCTATTGAATTGGCATCAAAAACCCTTAAATTCTGTATGGAGTTCATATATTATGTTATTGTGAGTAAGAAAAAATACAATGGCGCCCAAATGGGCATATTCTTGTATTCGACCATGGCTAAAGCTAAAGTACTGCAACTGAGCTGCTACTCTGCTCGACTTCAGCGGAGTAGCTTTCGTCATGTAGGGAAATTCTCAGCCTTAACTTTGCATCTAAATTTTGTGTTTTGATCTTTCCATCCTTCATGGCACTATGTGTACGTCTTACAACTTGTGGATGAAAATTATGAAGGGTATTAAGTTTTTAACCTCCATGGTTCTCTTGAATTTTAAAAAGTGAATATTGTAAAATAAACAATAATATTAAAAATTCTAGCAAAACTCGGGGAAGTCAATCAACAAACATGATTCTCTCGGTAGTCAATCGATACAATTGAAACTCATAACCTTATGAGTTTTGACATGTAAAGTTACGCCTCAGTGCTATATAGTAATAATTCTCTCAATTACCCAACTCGATTACAAAGAAAAGGGATTTAAGGAAAACGAACTCTCATTATATACACAAATGCACGAGAACAAAGTGATCAGTTTGGCTTAACATTCAAGCTTGTATTTGGTCAAGGAGGTTGCGCATCATCTACCTATAGCTGAGAATCGGGTTCAAGCATGTAGCAATCCATGGCCACTACATCAATCAATATTTCAATACTGGAGAAATTGGCTAAGAAGGAAATTATCACATTCTTCATATTTTCCAGGCAGGCAGATTTTCTAGAACTGTTCCACCATCAGCAGCAGCAGCAGGAGGAGGTGCTGAAGTAA

mRNA sequence

AATGCGGATTGAAGAGAAATATTGTAGAATCTCCAAAACCATGAGATTGATGATAATGTGAGTCACCATTAACAGTTATTTTTCCTCCGTTTTCTAAGGGAATTGGGTGAAAAACCTCAGTAGTTGCAAATTTGAGCTCCTTGATTCAATTGAACAAGGGCATGGTCCTGGCTATGGCCTCCATTTTGAAGCCACCGCCTCTTGTGCCCCTTCACTCCCTAAATCCAAACCTCCTCAACGCTTCACCAGTGATCGTATGTTTTCGTACGCACCCCATGACGTCGTTTCACCCATCCATTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGGATTCGAAGCCACGAAGAATATAGTTCCGATTTGCTGCGAAAACCGGTTGTGCCGCCGGCGATGGACCTGGCTACACCATCGGAGGATTACAGCAGCAGTGAGGAGAGTGGAAACGGAGACGAGGAGGAAGAGGAATGGGTTGACTGGGAGGACAGGATTCTGGAGGAGACTGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAATATGAAAGTGGGGATAGGTTGACCCCAGAGCACGAGAAAACAATTCTTGATCGGTTGCTTTCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGATTGGATATCATCCGAATTTTGAAAGGTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAGTTGGTTGATTTTTCATATTGGAAGTGCATGGAGGGTCTGATCAGAAAGAACTATCCTCTTCATGCAGAAAGCTTTATTCTTCGGCATTTTCAGCGACGTAGACGCAATTTTTTTCGGCAGGCAGATTTTCTAGAACTGTTCCACCATCAGCAGCAGCAGCAGGAGGAGGTGCTGAAGTAA

Coding sequence (CDS)

ATGGTCCTGGCTATGGCCTCCATTTTGAAGCCACCGCCTCTTGTGCCCCTTCACTCCCTAAATCCAAACCTCCTCAACGCTTCACCAGTGATCGTATGTTTTCGTACGCACCCCATGACGTCGTTTCACCCATCCATTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGGATTCGAAGCCACGAAGAATATAGTTCCGATTTGCTGCGAAAACCGGTTGTGCCGCCGGCGATGGACCTGGCTACACCATCGGAGGATTACAGCAGCAGTGAGGAGAGTGGAAACGGAGACGAGGAGGAAGAGGAATGGGTTGACTGGGAGGACAGGATTCTGGAGGAGACTGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAATATGAAAGTGGGGATAGGTTGACCCCAGAGCACGAGAAAACAATTCTTGATCGGTTGCTTTCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGATTGGATATCATCCGAATTTTGAAAGGTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAGTTGGTTGATTTTTCATATTGGAAGTGCATGGAGGGTCTGATCAGAAAGAACTATCCTCTTCATGCAGAAAGCTTTATTCTTCGGCATTTTCAGCGACGTAGACGCAATTTTTTTCGGCAGGCAGATTTTCTAGAACTGTTCCACCATCAGCAGCAGCAGCAGGAGGAGGTGCTGAAGTAA

Protein sequence

MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFRQADFLELFHHQQQQQEEVLK

Homology

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BLAST of Carg27331 vs. NCBI nr
Match: KAG7024257.1 (Protein DCL, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 506.9 bits (1304), Expect = 9.8e-140
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60
           MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS
Sbjct: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60

Query: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120
           HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF
Sbjct: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120

Query: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180
           VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL
Sbjct: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180

Query: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFRQADFLELFHHQQQ 240
           FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFRQADFLELFHHQQQ
Sbjct: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFRQADFLELFHHQQQ 240

Query: 241 QQEEVLK 248
           QQEEVLK
Sbjct: 241 QQEEVLK 247

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BLAST of Carg27331 vs. NCBI nr
Match: XP_022937348.1 (protein DCL homolog, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 468.8 bits (1205), Expect = 2.9e-128
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60
           MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS
Sbjct: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60

Query: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120
           HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF
Sbjct: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120

Query: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180
           VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL
Sbjct: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180

Query: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFR 228
           FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRR+FFR
Sbjct: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRHFFR 227

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BLAST of Carg27331 vs. NCBI nr
Match: XP_022975974.1 (protein DCL homolog, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 461.1 bits (1185), Expect = 6.1e-126
Identity = 222/227 (97.80%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60
           MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS
Sbjct: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60

Query: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120
           HEEYSSDLLRKPVVPPAMDLATPSEDY+SSEESGNGDEEEEEWVDWEDRILEETVPLVGF
Sbjct: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120

Query: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180
           VRMVLHSGKY SGDRL+PEHEKTILDRLL YHPECEKKIGCGIDYITIGYHPNFERSRCL
Sbjct: 121 VRMVLHSGKYGSGDRLSPEHEKTILDRLLLYHPECEKKIGCGIDYITIGYHPNFERSRCL 180

Query: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFR 228
           FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRR+FFR
Sbjct: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRHFFR 227

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BLAST of Carg27331 vs. NCBI nr
Match: XP_023536599.1 (protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.0 bits (1177), Expect = 5.2e-125
Identity = 221/227 (97.36%), Postives = 224/227 (98.68%), Query Frame = 0


Query: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60
           MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFH SIRALKTGPEGSRIRS
Sbjct: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRS 60

Query: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120
           HEEYSSDLLRKPVVPPA+DLAT SEDY+SSEESGNGDEEEEEWVDWEDRILEETVPLVGF
Sbjct: 61  HEEYSSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120

Query: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180
           VRMVLHSGKYESGDRLTPEHEKTILDRLL YHPECEKKIGCGIDYITIGYHPNFERSRCL
Sbjct: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCL 180

Query: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFR 228
           FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRR+FFR
Sbjct: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRHFFR 227

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BLAST of Carg27331 vs. NCBI nr
Match: XP_038897137.1 (protein DCL homolog, chloroplastic [Benincasa hispida])

HSP 1 Score: 402.9 bits (1034), Expect = 2.0e-108
Identity = 195/227 (85.90%), Postives = 206/227 (90.75%), Query Frame = 0


Query: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60
           M++AMASILKPPP VP HSLNPN  N+SPVI+CF T PMTSFH S RALKTGPEGSRIRS
Sbjct: 1   MLMAMASILKPPPFVPSHSLNPNFFNSSPVILCFPTQPMTSFHLSTRALKTGPEGSRIRS 60

Query: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120
           HEEYSSDLLRKPVVPPA DLA  SED  SSEESGN DEEEE+WVDWED+ILE+TVPLVGF
Sbjct: 61  HEEYSSDLLRKPVVPPARDLARLSEDDDSSEESGNDDEEEEDWVDWEDKILEDTVPLVGF 120

Query: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180
           VRMVLHSGKY SGDRL PEHEKTILDRLL YHPE EKKIGCGIDYITIGYHP+FE SRCL
Sbjct: 121 VRMVLHSGKYGSGDRLNPEHEKTILDRLLPYHPESEKKIGCGIDYITIGYHPDFESSRCL 180

Query: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFR 228
           FIVRKDGELVDFSYWKC++GLIRK YPLHAESFILRHF+RRRRNF R
Sbjct: 181 FIVRKDGELVDFSYWKCIKGLIRKKYPLHAESFILRHFRRRRRNFRR 227

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BLAST of Carg27331 vs. ExPASy Swiss-Prot
Match: Q9C642 (Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-66
Identity = 117/199 (58.79%), Postives = 153/199 (76.88%), Query Frame = 0


Query: 26  NASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAMDLATPSE 85
           ++SP+ + F     TS  P +RAL+T  +G++I + E Y S+LLR+P +          E
Sbjct: 27  SSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRI-------ASEE 86

Query: 86  DYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTIL 145
                EE    + E +E+VDWED+ILE TVPLVGFVRM+LHSGKY + DRL+PEHE+TI+
Sbjct: 87  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 146

Query: 146 DRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKN 205
           + LL YHPECEKKIGCGIDYI +G+HP+FE SRC+FIVRKDGE+VDFSYWKC++GLI+K 
Sbjct: 147 EMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 206

Query: 206 YPLHAESFILRHFQRRRRN 225
           YPL+A+SFILRHF++RR+N
Sbjct: 207 YPLYADSFILRHFRKRRQN 218

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BLAST of Carg27331 vs. ExPASy Swiss-Prot
Match: Q42463 (Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.6e-66
Identity = 119/180 (66.11%), Postives = 147/180 (81.67%), Query Frame = 0


Query: 48  ALKTGPEGSRIRSHEEYSSDLLRKPVVPPAMDLATPSEDY---SSSEESGNGDEEEEEWV 107
           A+KTG EG  IRS    +++LLRKPV+   ++  + SE+     S +E G    + E WV
Sbjct: 47  AVKTGSEGGGIRSD---NAELLRKPVISTELETTSESEELVKEESDDEVGKKSGDGEGWV 106

Query: 108 DWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGID 167
           DWED+ILE+TVPLVGFVRM+LHSGKY  GDRL+P+H++TIL RLL YHPEC+KKIG G+D
Sbjct: 107 DWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVD 166

Query: 168 YITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRN 225
           YIT+GYHP+FE SRCLFIVRKDGE VDFSYWKC++GLIRKNYPL+A+SFILRHF++RRRN
Sbjct: 167 YITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRRRN 223

[Close]

BLAST of Carg27331 vs. ExPASy Swiss-Prot
Match: Q5D869 (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-20
Identity = 42/116 (36.21%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 107  EDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYI 166
            E  +L +  P++  +R ++H   Y  GD ++ + +  +L+++L++HP+ E K+G G+D+I
Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFI 1795

Query: 167  TIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRR 223
            T+  H  F  SRC F+V  DG   DFSY K +   + K YP  AE FI ++F + R
Sbjct: 1796 TVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPR 1851

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BLAST of Carg27331 vs. ExPASy Swiss-Prot
Match: Q8L557 (Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.1e-06
Identity = 39/143 (27.27%), Postives = 62/143 (43.36%), Query Frame = 0


Query: 76  PAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDR----------------ILEETVPLVG 135
           P  +      +   +EE  NG E +++ V  E++                + +  V  + 
Sbjct: 30  PKAETGDEKREREETEEEENGGESKKQKVGEEEKSGPVKLGPKEFVTSVAMFDYFVKFLH 89

Query: 136 FVRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRC 195
           F    L   KYE            +LD +   H E EKKIG GI    +  HP + +SRC
Sbjct: 90  FWPTDLDVNKYE---------HMVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMW-KSRC 149

Query: 196 LFIVRKDGELVDFSYWKCMEGLI 203
            F+VR+D    DFS+ KC++ ++
Sbjct: 150 FFLVREDDTADDFSFRKCVDQIL 162

[Close]

BLAST of Carg27331 vs. ExPASy TrEMBL
Match: A0A6J1FFU9 (protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443664 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 226/227 (99.56%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60
           MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS
Sbjct: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60

Query: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120
           HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF
Sbjct: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120

Query: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180
           VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL
Sbjct: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180

Query: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFR 228
           FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRR+FFR
Sbjct: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRHFFR 227

[Close]

BLAST of Carg27331 vs. ExPASy TrEMBL
Match: A0A6J1IM57 (protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476513 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 3.0e-126
Identity = 222/227 (97.80%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60
           MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS
Sbjct: 1   MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRS 60

Query: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120
           HEEYSSDLLRKPVVPPAMDLATPSEDY+SSEESGNGDEEEEEWVDWEDRILEETVPLVGF
Sbjct: 61  HEEYSSDLLRKPVVPPAMDLATPSEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 120

Query: 121 VRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCL 180
           VRMVLHSGKY SGDRL+PEHEKTILDRLL YHPECEKKIGCGIDYITIGYHPNFERSRCL
Sbjct: 121 VRMVLHSGKYGSGDRLSPEHEKTILDRLLLYHPECEKKIGCGIDYITIGYHPNFERSRCL 180

Query: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFR 228
           FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRR+FFR
Sbjct: 181 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRHFFR 227

[Close]

BLAST of Carg27331 vs. ExPASy TrEMBL
Match: A0A6J1BTU2 (protein DCL homolog, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005680 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.8e-106
Identity = 187/223 (83.86%), Postives = 201/223 (90.13%), Query Frame = 0


Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRSHE 62
           +AMAS+ KPPP  P HSLNP+ LN+SPVI+CF  HPMTS HPSIRALKTGPEGSRIRSHE
Sbjct: 1   MAMASVSKPPPFPPFHSLNPSFLNSSPVILCFPMHPMTSLHPSIRALKTGPEGSRIRSHE 60

Query: 63  EYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVR 122
           EYSSDLLRKPVVPPA D A  SED   SEESG   EEEE+WVDWED+ILE+TVPLVGFVR
Sbjct: 61  EYSSDLLRKPVVPPAKDFARISEDDEGSEESGTDGEEEEDWVDWEDKILEDTVPLVGFVR 120

Query: 123 MVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFI 182
           MVLHSGKY SGDRL+ EHEKTILDRLL YHPECEKKIGCGIDYITIGYHP+FE SRCLFI
Sbjct: 121 MVLHSGKYGSGDRLSLEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPDFESSRCLFI 180

Query: 183 VRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNF 226
           VRKDGELVDFSYWKC++GLIRKNYPLHAESFILRHF+RRRRN+
Sbjct: 181 VRKDGELVDFSYWKCIKGLIRKNYPLHAESFILRHFRRRRRNY 223

[Close]

BLAST of Carg27331 vs. ExPASy TrEMBL
Match: A0A0A0L2D0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639820 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 3.2e-104
Identity = 181/222 (81.53%), Postives = 201/222 (90.54%), Query Frame = 0


Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRSHE 62
           +AMASILKPPP  P HSLNPN  N+SP+I+CF THP+ SFHPS RALKTGPEG R+RSH+
Sbjct: 1   MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRLRSHQ 60

Query: 63  EYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVR 122
           EYSSDLLRKPV P A DLA PSED  SSEESGN DEEE EWVDWED+ILE+TVPLVGFVR
Sbjct: 61  EYSSDLLRKPVGPSAKDLAGPSEDDDSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVR 120

Query: 123 MVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFI 182
           MVLH+GKYE+GDRL PEHEKTIL+RLL YHPE EKKIGCG+DYIT+GYHP+FE SRCLFI
Sbjct: 121 MVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFI 180

Query: 183 VRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRN 225
           VRKDGE+VDFSYWKC++GLIRKNYPL+AESFILRHF+RRRRN
Sbjct: 181 VRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRN 222

[Close]

BLAST of Carg27331 vs. ExPASy TrEMBL
Match: A0A5A7VDC9 (Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003370 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 9.3e-104
Identity = 183/225 (81.33%), Postives = 202/225 (89.78%), Query Frame = 0


Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRSHE 62
           +AMASIL   P  P HSLNPN  N+SP+I+CF THP+ SFHPS RALKTGPEGSRIRSH+
Sbjct: 1   MAMASILTLLPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGSRIRSHQ 60

Query: 63  EYSSDLLRKPVVPPAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVR 122
           EYSSDLLRKPVVPPA DLA PSED  SSEESGN +EEE +WVDWED+ILE+TVPLVGFVR
Sbjct: 61  EYSSDLLRKPVVPPAKDLAGPSEDDDSSEESGNDEEEEVDWVDWEDKILEDTVPLVGFVR 120

Query: 123 MVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFI 182
           MVLH+GKYESGDRL PEHEKTIL+RLL YHPE EKKIGCG+DYIT+GYHP+FE SRCLFI
Sbjct: 121 MVLHTGKYESGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFI 180

Query: 183 VRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRRRNFFR 228
           VRKDGELVDFSYWKC++GLIRKNYPL+AESFILRHF+RRRRN  R
Sbjct: 181 VRKDGELVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRNLRR 225

[Close]

BLAST of Carg27331 vs. TAIR 10
Match: AT1G45230.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 253.4 bits (646), Expect = 1.8e-67
Identity = 117/199 (58.79%), Postives = 153/199 (76.88%), Query Frame = 0


Query: 26  NASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAMDLATPSE 85
           ++SP+ + F     TS  P +RAL+T  +G++I + E Y S+LLR+P +          E
Sbjct: 27  SSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRI-------ASEE 86

Query: 86  DYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTIL 145
                EE    + E +E+VDWED+ILE TVPLVGFVRM+LHSGKY + DRL+PEHE+TI+
Sbjct: 87  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 146

Query: 146 DRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKN 205
           + LL YHPECEKKIGCGIDYI +G+HP+FE SRC+FIVRKDGE+VDFSYWKC++GLI+K 
Sbjct: 147 EMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 206

Query: 206 YPLHAESFILRHFQRRRRN 225
           YPL+A+SFILRHF++RR+N
Sbjct: 207 YPLYADSFILRHFRKRRQN 218

[Close]

BLAST of Carg27331 vs. TAIR 10
Match: AT1G45230.2 (Protein of unknown function (DUF3223) )

HSP 1 Score: 250.4 bits (638), Expect = 1.5e-66
Identity = 116/199 (58.29%), Postives = 152/199 (76.38%), Query Frame = 0


Query: 26  NASPVIVCFRTHPMTSFHPSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAMDLATPSE 85
           ++SP+ + F     TS  P +RAL+T  +G++I + E Y S+LLR+P +          E
Sbjct: 27  SSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRI-------ASEE 86

Query: 86  DYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTIL 145
                EE    + E +E+VDWED+ILE TVPLVGFVRM+LHSGKY + DRL+PEHE+TI+
Sbjct: 87  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 146

Query: 146 DRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKN 205
           + LL YHPECEKKIGCGIDYI + +HP+FE SRC+FIVRKDGE+VDFSYWKC++GLI+K 
Sbjct: 147 EMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 206

Query: 206 YPLHAESFILRHFQRRRRN 225
           YPL+A+SFILRHF++RR+N
Sbjct: 207 YPLYADSFILRHFRKRRQN 218

[Close]

BLAST of Carg27331 vs. TAIR 10
Match: AT3G46630.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 132.9 bits (333), Expect = 3.6e-31
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 0


Query: 77  AMDLATPSEDYSSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRL 136
           AM++ +P  D S   E    D +  +W + E  IL +  P+    + +LHS +Y  G+RL
Sbjct: 65  AMNVTSPVVDNSWRYE----DPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERL 124

Query: 137 TPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWK 196
             E EK ++++LL YHP  + KIGCG+D+I +  HP F  SRCLF+VR DG  +DFSY K
Sbjct: 125 DFEDEKIVMEKLLPYHPYSKDKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQK 184

Query: 197 CMEGLIRKNYPLHAESFILRHFQR 221
           C+   +R  YP HAE FI  HF+R
Sbjct: 185 CLRAYVRDKYPSHAERFIREHFKR 204

[Close]

BLAST of Carg27331 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-21
Identity = 42/116 (36.21%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 107  EDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYI 166
            E  +L +  P++  +R ++H   Y  GD ++ + +  +L+++L++HP+ E K+G G+D+I
Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFI 1795

Query: 167  TIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRRR 223
            T+  H  F  SRC F+V  DG   DFSY K +   + K YP  AE FI ++F + R
Sbjct: 1796 TVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTKPR 1851

[Close]

BLAST of Carg27331 vs. TAIR 10
Match: AT5G62440.1 (Protein of unknown function (DUF3223) )

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-07
Identity = 39/143 (27.27%), Postives = 62/143 (43.36%), Query Frame = 0


Query: 76  PAMDLATPSEDYSSSEESGNGDEEEEEWVDWEDR----------------ILEETVPLVG 135
           P  +      +   +EE  NG E +++ V  E++                + +  V  + 
Sbjct: 30  PKAETGDEKREREETEEEENGGESKKQKVGEEEKSGPVKLGPKEFVTSVAMFDYFVKFLH 89

Query: 136 FVRMVLHSGKYESGDRLTPEHEKTILDRLLSYHPECEKKIGCGIDYITIGYHPNFERSRC 195
           F    L   KYE            +LD +   H E EKKIG GI    +  HP + +SRC
Sbjct: 90  FWPTDLDVNKYE---------HMVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMW-KSRC 149

Query: 196 LFIVRKDGELVDFSYWKCMEGLI 203
            F+VR+D    DFS+ KC++ ++
Sbjct: 150 FFLVREDDTADDFSFRKCVDQIL 162

The following BLAST results are available for this feature:

BLAST of Carg27331 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024257.1	9.8e-140	100.00	Protein DCL, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937348.1	2.9e-128	99.56	protein DCL homolog, chloroplastic-like [Cucurbita moschata]	[more]
XP_022975974.1	6.1e-126	97.80	protein DCL homolog, chloroplastic-like [Cucurbita maxima]	[more]
XP_023536599.1	5.2e-125	97.36	protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_038897137.1	2.0e-108	85.90	protein DCL homolog, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg27331 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C642	2.6e-66	58.79	Protein DCL homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DCL PE=2 S...	[more]
Q42463	2.6e-66	66.11	Protein DCL, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DCL PE=2 SV=1	[more]
Q5D869	1.6e-20	36.21	DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPE1...	[more]
Q8L557	5.1e-06	27.27	Protein EMBRYO DEFECTIVE 514 OS=Arabidopsis thaliana OX=3702 GN=EMB514 PE=1 SV=1	[more]

BLAST of Carg27331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFU9	1.4e-128	99.56	protein DCL homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1IM57	3.0e-126	97.80	protein DCL homolog, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476...	[more]
A0A6J1BTU2	5.8e-106	83.86	protein DCL homolog, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11100568...	[more]
A0A0A0L2D0	3.2e-104	81.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639820 PE=4 SV=1	[more]
A0A5A7VDC9	9.3e-104	81.33	Protein DCL OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003370 P...	[more]

BLAST of Carg27331 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45230.1	1.8e-67	58.79	Protein of unknown function (DUF3223)	[more]
AT1G45230.2	1.5e-66	58.29	Protein of unknown function (DUF3223)	[more]
AT3G46630.1	3.6e-31	43.75	Protein of unknown function (DUF3223)	[more]
AT2G40030.1	1.2e-21	36.21	nuclear RNA polymerase D1B	[more]
AT5G62440.1	3.6e-07	27.27	Protein of unknown function (DUF3223)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF11523	DUF3223	coord: 123..198 e-value: 4.3E-28 score: 97.8
None	No IPR available	GENE3D	3.10.450.40		coord: 112..201 e-value: 3.3E-25 score: 90.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..102
None	No IPR available	PANTHER	PTHR33415:SF15	PROTEIN DCL HOMOLOG, CHLOROPLASTIC	coord: 23..224
IPR044673	Protein DCL-like	PANTHER	PTHR33415	FAMILY NOT NAMED	coord: 23..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27331-RA	Carg27331-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding