Carg27236 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27236
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Location	Carg_Chr05: 6167492 .. 6173732 (-)
RNA-Seq Expression	Carg27236
Synteny	Carg27236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCGAAATCCAGTATCGGCTCTAACAAGAAAACAAGGGCATTGATGCCCTTCACATCAACCACTAGTGGCTCATCTTGTTACTTTGACTGTGCTACCTATATTGGACATGGTTGCCACGTTAGTCAAATTACCAAAGATCTTCTTGAGGATATAGATGGTGTATCAAAAATTTTGCTACATCAAATCAAGGGAGTCTCCTCTCCAAGGAAAGGCTAGTTTTGTCAAAGACCTCTACACCCATATCCTCCATTTTACATTTTTATCATGATTCGGTTTTGGGGAGACATTCTGGGTTTCTTCGGACCTACAAGCACTTGACTTGTGAGTAGACTAGGTGGGAATAAAATCTGATGTCAAAGAGTATGTTGCGTGATGTTTTGTTTCCCATCAAAATTAGTCATTGGCCGACTTTCCCCGCCTTTCTATTCCTGACTTTATATGGGAGGATAGATCAATAGATTTAATTAGGGGTCTTCCACTGTCATTTGGGTTTGATATGGTATTTATGATGGTTGATCGACTCAACAAATTTGAGCATTTTTTTTCAGTTGGTCGTCCGTTTATGGTCAGGTTGATTGATGAAGTTTTCCTCATAGAGTTGGTCCGACTCATGTATTCCCTTGCTCATTAGTGTTATATCCAGACAAAAATATTTATCAACCATTTTTGGACTGAACTTTTCATGATGCAATGGACCCAACTCTACGTACCACTCAAAATGTATGGGCAAACCCAATGGATCAATAGGTGTTTGGAAACATATCTTTGTTGTTTCTATGGTGAATGACTTAAGACTTGGAGAAGTTAGGTGAACAGGTTCGAGTACTGGCATAATACCACGTACCATGTATCCATCAACACCACCCCCTTATCACTAGGTGCAAGGTCGACCTCCACTCCCTTTGATATTCTATGGGGCATAGAAAACATCTAATTCCACACTGAAACTACAAATGTTGGATCACAATGTGGCATTGAGTTCCTTGAAAGGCCTTCTGGTAACAAACGAAGAGTTTATGTAAATGCAGGCTAGCAAGAAGTGCAAGGAGGTCGAGTTTGACATTGACGATTGGATTTACCTAAAAATTTACCCATACTGAAAGTTAACTTTACCCAAAAAAAAGCAACGATATGTTGTCAACCTATTTATTTGGCTCATCATTTTATAGCACCTGTGGGTAGTGTGGTGTATCTTGACTCTTCCTAATGAGGCAACAATTCATCCGCTTTTCCACATGTCACAGCTCAAGGAGGCCGTGGGGGATCCTTCATTAATCCAACCTTGTACACCAATGCTTACTATGCTTATTGATGAGTTTGAGTGGACGGTTGAGCCACAAGAAGTGATGGGCTTATGAAAGAACGTGGATGAAGGAGAATGGGAACTGCTGATTATTTGGAAGTATTTGCCTGAGTATGAAGCTACGTGGGACCTCATGTCAATGATTCAACGTCAGTTTCCGGATTTCTACCATGAGGACAAATATTGGGTGGCTGGTCCTGTTCAGTTGGGGCTTAGCTTATTTTGTATGTAGTCAGGAAGTAGTGTGAAGGAAGGAAGCGTCATTTTGTCAGGACTGTAGTTCTTGGGAGAGCACAGCTCTCTCGAATAAGCTGAATAATATCGTCATTTTGGCTGTTGTAAGTGTTTGATATTGTATGATAAACGTCTTGATGAAAAAAGGAATTGAGTTACAGTCTAGGTTTAATCCTCCAAGATTCGAAGGCTGTGCTTCATTAGATCCTCTTTGGAGGGGCCCTTTGATCCCACGTCTCAAGGCTGTTTTTGTTTTGTTTTTTTGTTTTTCTTTGTGTGTGTGTGTGTTTAATTCCATATATCGTTCCCCCCCCACCCACCAAAAAAAAAAAAAAAAGTCTTCATGAAAAAAGCATGTGAATGATTGAAGACATGGCCCAGGCCCACGTTAATTAACCTTCAGCTGCTTTTAGTTTACTTTTTGAACTCTACTTTGAGTGAACTATTGAGCATTAACTAGAAAATGATTGGTAGGTGCAAGAGCTGACTTGCAAGTCCAAAAATCTTGAAGCTGAACTCGAGAAAACCTCAAAGAAATTGATGGAGGTTACTGCAATAGCTACAGATGAAGCTGACAAATGCAAATCAGCCAAGGAAGTTATTAAATCCTTAGCGACTCAGGTTAGAGTCTTTTTGATTTATGGGGTAGATTTTGTAAGAAAAGTTTCCATTATATTTCATAAACGTTCTTTAATAACTTCATTATATTCACCCCCACTTTTTTACTTAAAACGTCCAATGTCAAATTTATATGGTCAGAAATAGTAAGGAAAACAGCTGTCTTTCAGTCGGCTTCATATTATTATATCATTTTAATTGTTAATGAACTTTACAGCTTATGCCCACATTTCTTGTTTTGACATGCAACTAAGTTGAACTGCATCTCATATTCCAAATAATATATAAATTATGTACCTTTCTAAGCTTCACATGTCATAATGTAAGTGGATTCTTTCTTCAATTAGGAACCAATAATTTTTTCTGTCAAATAAGCGTAATAAAAGGTAAGAGAGTTAGGTATTCTTAGAGCAAAATTAAATTCTGTGTTATTGACTAAGTTGCCTCTGTCTATTTCAAAAGAAAGATCTGGGCTCTTGCCATAGCACAATGCTGTCTGTCTCTGTGCGTGTGTTCAAATGGGTAGTTAAAATATTGAATTGATGTTGTGGTTGTTTGATTTTTTAATTTTTTTTAATTTCTGAAATTTTGGAACTGAAAGAGAAATTACTTTGACATTTGAAGGTGCTGGGTATGAATTCTCTTGATATTTCCACTGCATTTCACTCATCGAATTCAAATATAGTTGTTTCTACTATGGTTTTTATTGAACGAGTAAATTGTATTACTCTCCTTTCTTGTTATTCATTAGAGAAGTATATAGCTCTATGTATAATAAAGAAAACTAACTATTCTACAGGGAATAGAAAACAATATATAAAAGAAAGCTAACTAATCCTCTAAGGAGTAAGAAACAATACAGAAAAGGAAACAAAAAATAGGCTAATTTCCTTACTAAATGAGATTAAGGAATTTATCATTCATTCCCAACTTGAATACTATCCTATAAAAACATAAGTTGCAGAGTTCTTTTGTTAGCACGTCTACCAATTGTAGCCACGAGGGTACATAACTCATGCATATTTTTCAGTTCTCTAACTTTTCCTTGATAAAATGCTAAGCGATTTCAATATGCTTTGTCTTATCATGTTGAATAGGATTATGAGCGATGTTTATGGTTGATTTGGTGTCATAGTACAACTTTACCCGAGTCTTCTCCTTTAATATGTAAATTATCAAGGATTATCTTCAACCATAAGAACCATAAGAGATCAAATCTTCCATGTGCAATAGCTTAGAATTCAGCCATATGCCATCCATACATGTTTTTCCTTCAATTGTGACTTTAGCCAACTTGCCTCTACTCTAGGTCACGTCCAAAGGCTCAACCTTACCTCTACTCTAGGCCAACGTCCTTCAAATGCAACATCACATCTCATCTCATTATTTAGATTCTCATCAATCCGGAACTTCACCAAAATATGCTTGGATCCTTCGTTAGGTCAAAATGACCCTAAAACGCCCAAAGGGAGCTTACTAGGTGATTTAAGTACTTACTGAGATATTAGGACATTATAACACTTACTTAGTACAGTGCTAGCCAATAACTCTCAAGTTCCATAAATGCTTCATAGCCAATAACTCCTCAAGTTCCATAAATGCTTCATGATGCCATTTAGAGCTTCAGAATTTAATCAGTTGTCATAACTCGCTCAAATACGCTTATTAAGAACCAATCCATGACTCAACCTTATATTCGGGACCTCTTGAACATCCATCCATCCCGACACTATTGAGGCATGCCAAGTTATTTATGCATACTGTGTCTGAGTCCAGCTCTATATTTCAACCTTTGACTCTTGAGGTTGGCACCTATTAAGCTTGTCTCTAACACCCTTGATGGCACTATTGCTTTTAATCTTACTTGTACTAGGCTAGAACCCTCCTATATTTTAACCTTTGACTCTTGAGGTTGGCACCTATTAAGCGTGTCTCTAACACCCTTGATGGCAGAGGTTGGCACCTATTAAGCTTGTCTCTAACACCCTTGCTGGCAGAGGTTGGCACCTATTAAGCTTGTCTCTAACACCCTTGATGGCAATGATGGCACTATTGCTTTTAATCTTACTTGTACTAGGCAAGAACCCTCCTATATTTCAACCTTTGACTCTTGAGGTTATGACTTGGGGGCCCGTCTGACTCTCATTAAGACACTAGTTTTTGTTTCTTGCTTATACTTTAGCTTGACAATTGTCCACTCTTCTTGTTGTGTTATATGATGCATCGTTCTTCTTTGTTGCATCACGTCACTTGTCTTTCTTGATCCTCATATTGTTCAATGGGCGTCACTCGTGTGTCGCTCTCTATCTGTCTGTACCTAAGAGTTACAATCTATTCTTTTCATAGTATGATAGTGACATTCTCCCCCACTTAAACATATTATCTTGATAATGGTCCAAACTTTGGGCTGGTTGCTAATTGACCCATTGAAAATAATCGTGCATGAAAGAGAAATGAAACTTGTCACGTTACTTATGAGCTAACCCACTACGAACCTTCTCTCGGCCTCCTAGACTTGCAACATAAGCACAACAACACATCAGTTACACCGAGCTATTCCACCAACGGACCTAGTAGTGCCTAGTTCTTAGGACTTGGCCACCAAGACTCGTAATGTCGTCACAATAAAGCTTCTGATGCCTCTTGGTCAGCTTGGAGACATTTGCCCCAATGTAACTTTAGCACTTCTCATGGCCAATTCTCAACTTGGCCATCTCTTGTGGCAAGCACTGCACATGATGCTTTATTATGGTGTTATTGTAGCTTTATTTTTTTTTTGTCTCTTATATAGAACATGGTACTCCTTGTTCATGCCGATTTTGATAACTTGGGAAGCCACCCGCATAGGCATGTGGACATTACTTGAGGGATAATTATTTGGCTCTCTCATGCTCACTTCTCTTGGAACACTTTCACGAGCAAGCAACCAATTCTCTTGAATTACTTTCCTCTCTCATGTTAGTTGTTTAGACTTAAGTTTGAAGAGAGGGCCAAAATTACTTGAATTACATATGATATTTTACTGTAGTTTGTTCTTCTCAATACTATTTCTTTTCAGTTCTTTGGTTGATAAATGTAATATAACCATATGAGTGAATTCGAAGAAGTTAATTTCAAACATGCTAATAACTATAGTGTGCTAATGAACTCATCAGTCCCTCCATTTAATATTTATGCATGATTCATATTCCCTCCCTCCTCTATTGTGGATACTAAAGTTTTAATTGTTTTGCAGTTAAAAGAGATGGCCGATAAGATGCCAGAGGCACACAGTGATATTCTCAACTATTGCACTGTTTCTGGGCAAAATGGTAGTAATCTCAATCAGCTTCCCACCGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCAAATGGAATTTCAAAAAGTCAAAACTTACCAACTGGAAACAAAGGACAAAATGAAAAGGGAGAATGGGTTGTACAAGACGAACCAGGCGTGTATATAACCCTGTCTGCTTTGCCAGGAGGAGGAGGCAATGAGCTGAAACGAGTTCGTTTCAGGTACTAAATTTAGCTCACTTTTTGTGAAAGTTTATTAAAAATTTGTTTGTTATTATGAAAAGACCAACGGTAACGGTCCAAACCCACCGCTAGCAGATATGGTTCTTTTTAGGCTTTTCTTTTTGGACTTCCCCTCAAGGCTTTAAAACAGCTAGGGAAAAGTTTCCACACCCTTATGAAGGGTGTTTCGTTCTCCTCCCCAACCCAACCCAACCCCCAACCCAACCAATGTGGAGGATTGTGGGACTGTGGGGGATCTCACACCAACTATCTGATTCATGGGTATATGTTCTCAGTTTTGATGTGTTAAAAAAAATTGTGTTGTGCAGTCGAAGACATTTTACAGAAGCACAAGCAGAGAAGTGGTGGGCGGAATTTGGAGCGAAGGTTTGCGAGCGGCACAAGGTAAAGAGTACAGATTAAGAAGTTGTTTGTTTGTGCTGGAATTGAATTGAGCAGGGAAAGAAAGAAGGCAAGGAGAAGGCACTTTTTGGTGACCGTCTTCCCCTCCCTTCTCTGGAAGACATTCTTCCTTTTTCATGTTCCAAATGA

mRNA sequence

ATGACTTCGAAATCCAGTATCGGCTCTAACAAGAAAACAAGGGCATTGATGCCCTTCACATCAACCACTAGTGGCTCATCTTGTTACTTTGACTGTGCTACCTATATTGGACATGGTTGCCACCACCTGTGGGTAGTGTGGTGTATCTTGACTCTTCCTAATGAGGCAACAATTCATCCGCTTTTCCACATGTCACAGCTCAAGGAGGCCGTGGGGGATCCTTCATTAATCCAACCTTGTACACCAATGCTTACTATGCTTATTGATGAGTTTGAGTGGACGGTTGAGCCACAAGAAGTGCAAGAGCTGACTTGCAAGTCCAAAAATCTTGAAGCTGAACTCGAGAAAACCTCAAAGAAATTGATGGAGGTTACTGCAATAGCTACAGATGAAGCTGACAAATGCAAATCAGCCAAGGAAGTTATTAAATCCTTAGCGACTCAGAACATGTTAAAAGAGATGGCCGATAAGATGCCAGAGGCACACAGTGATATTCTCAACTATTGCACTGTTTCTGGGCAAAATGGTAGTAATCTCAATCAGCTTCCCACCGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCAAATGGAATTTCAAAAAGTCAAAACTTACCAACTGGAAACAAAGGACAAAATGAAAAGGGAGAATGGGTTGTACAAGACGAACCAGGCGTTCGAAGACATTTTACAGAAGCACAAGCAGAGAAGTGGTGGGCGGAATTTGGAGCGAAGGTTTGCGAGCGGCACAAGGGAAAGAAAGAAGGCAAGGAGAAGGCACTTTTTGGTGACCGTCTTCCCCTCCCTTCTCTGGAAGACATTCTTCCTTTTTCATGTTCCAAATGA

Coding sequence (CDS)

ATGACTTCGAAATCCAGTATCGGCTCTAACAAGAAAACAAGGGCATTGATGCCCTTCACATCAACCACTAGTGGCTCATCTTGTTACTTTGACTGTGCTACCTATATTGGACATGGTTGCCACCACCTGTGGGTAGTGTGGTGTATCTTGACTCTTCCTAATGAGGCAACAATTCATCCGCTTTTCCACATGTCACAGCTCAAGGAGGCCGTGGGGGATCCTTCATTAATCCAACCTTGTACACCAATGCTTACTATGCTTATTGATGAGTTTGAGTGGACGGTTGAGCCACAAGAAGTGCAAGAGCTGACTTGCAAGTCCAAAAATCTTGAAGCTGAACTCGAGAAAACCTCAAAGAAATTGATGGAGGTTACTGCAATAGCTACAGATGAAGCTGACAAATGCAAATCAGCCAAGGAAGTTATTAAATCCTTAGCGACTCAGAACATGTTAAAAGAGATGGCCGATAAGATGCCAGAGGCACACAGTGATATTCTCAACTATTGCACTGTTTCTGGGCAAAATGGTAGTAATCTCAATCAGCTTCCCACCGAGAGCCTTTCAATGAGCATAAACTCTCGTTTGGAGTCAAATGGAATTTCAAAAAGTCAAAACTTACCAACTGGAAACAAAGGACAAAATGAAAAGGGAGAATGGGTTGTACAAGACGAACCAGGCGTTCGAAGACATTTTACAGAAGCACAAGCAGAGAAGTGGTGGGCGGAATTTGGAGCGAAGGTTTGCGAGCGGCACAAGGGAAAGAAAGAAGGCAAGGAGAAGGCACTTTTTGGTGACCGTCTTCCCCTCCCTTCTCTGGAAGACATTCTTCCTTTTTCATGTTCCAAATGA

Protein sequence

MTSKSSIGSNKKTRALMPFTSTTSGSSCYFDCATYIGHGCHHLWVVWCILTLPNEATIHPLFHMSQLKEAVGDPSLIQPCTPMLTMLIDEFEWTVEPQEVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKMPEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGEWVVQDEPGVRRHFTEAQAEKWWAEFGAKVCERHKGKKEGKEKALFGDRLPLPSLEDILPFSCSK

Homology

[Close]

BLAST of Carg27236 vs. NCBI nr
Match: KAG7029960.1 (hypothetical protein SDJN02_08304, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 566.2 bits (1458), Expect = 1.5e-157
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MTSKSSIGSNKKTRALMPFTSTTSGSSCYFDCATYIGHGCHHLWVVWCILTLPNEATIHP 60
           MTSKSSIGSNKKTRALMPFTSTTSGSSCYFDCATYIGHGCHHLWVVWCILTLPNEATIHP
Sbjct: 1   MTSKSSIGSNKKTRALMPFTSTTSGSSCYFDCATYIGHGCHHLWVVWCILTLPNEATIHP 60

Query: 61  LFHMSQLKEAVGDPSLIQPCTPMLTMLIDEFEWTVEPQEVQELTCKSKNLEAELEKTSKK 120
           LFHMSQLKEAVGDPSLIQPCTPMLTMLIDEFEWTVEPQEVQELTCKSKNLEAELEKTSKK
Sbjct: 61  LFHMSQLKEAVGDPSLIQPCTPMLTMLIDEFEWTVEPQEVQELTCKSKNLEAELEKTSKK 120

Query: 121 LMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKMPEAHSDILNYCTVSGQNGSNLN 180
           LMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKMPEAHSDILNYCTVSGQNGSNLN
Sbjct: 121 LMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKMPEAHSDILNYCTVSGQNGSNLN 180

Query: 181 QLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGEWVVQDEPGVRRHFTEAQAEKWW 240
           QLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGEWVVQDEPGVRRHFTEAQAEKWW
Sbjct: 181 QLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGEWVVQDEPGVRRHFTEAQAEKWW 240

Query: 241 AEFGAKVCERHKGKKEGKEKALFGDRLPLPSLEDILPFSCSK 283
           AEFGAKVCERHKGKKEGKEKALFGDRLPLPSLEDILPFSCSK
Sbjct: 241 AEFGAKVCERHKGKKEGKEKALFGDRLPLPSLEDILPFSCSK 282

[Close]

BLAST of Carg27236 vs. NCBI nr
Match: KAG6598992.1 (PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.8 bits (813), Expect = 9.6e-83
Identity = 175/205 (85.37%), Postives = 176/205 (85.85%), Query Frame = 0


Query: 99   EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
            +VQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ  LKEMADKM
Sbjct: 806  QVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ--LKEMADKM 865

Query: 159  PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
            PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE
Sbjct: 866  PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 925

Query: 219  WVVQDEPGV---------------------RRHFTEAQAEKWWAEFGAKVCERHKGKKEG 278
            WVVQDEPGV                     RRHFTEAQAEKWWAEFGA      KGKKEG
Sbjct: 926  WVVQDEPGVYITLSALPGGGGNELKRVRFSRRHFTEAQAEKWWAEFGA------KGKKEG 985

Query: 279  KEKALFGDRLPLPSLEDILPFSCSK 283
            KEKALFGDRLPLPSLEDILPFSCSK
Sbjct: 986  KEKALFGDRLPLPSLEDILPFSCSK 1002

[Close]

BLAST of Carg27236 vs. NCBI nr
Match: XP_023546471.1 (PH, RCC1 and FYVE domains-containing protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546472.1 PH, RCC1 and FYVE domains-containing protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-69
Identity = 151/177 (85.31%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ  LKEMADKM
Sbjct: 806 QVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ--LKEMADKM 865

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEAHSDILN CTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE
Sbjct: 866 PEAHSDILNSCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 925

Query: 219 WVVQDEPGV---------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                     RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 926 WVVQDEPGVYITLSALPGGGGNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 980

[Close]

BLAST of Carg27236 vs. NCBI nr
Match: XP_022972822.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima] >XP_022972824.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima] >XP_022972825.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-69
Identity = 151/177 (85.31%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ  LKEMADKM
Sbjct: 806 QVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ--LKEMADKM 865

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEAHSDILN CTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE
Sbjct: 866 PEAHSDILNSCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 925

Query: 219 WVVQDEPGV---------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                     RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 926 WVVQDEPGVYITLSALPGGGGNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 980

[Close]

BLAST of Carg27236 vs. NCBI nr
Match: XP_022946481.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata] >XP_022946482.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata] >XP_022946483.1 PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-69
Identity = 151/177 (85.31%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ  LKEMADKM
Sbjct: 806 QVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ--LKEMADKM 865

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEAHSDILN CTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE
Sbjct: 866 PEAHSDILNCCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 925

Query: 219 WVVQDEPGV---------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                     RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 926 WVVQDEPGVYITLSALPGGGGNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 980

[Close]

BLAST of Carg27236 vs. ExPASy TrEMBL
Match: A0A6J1I9Q9 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471347 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 5.9e-70
Identity = 151/177 (85.31%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ  LKEMADKM
Sbjct: 806 QVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ--LKEMADKM 865

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEAHSDILN CTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE
Sbjct: 866 PEAHSDILNSCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 925

Query: 219 WVVQDEPGV---------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                     RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 926 WVVQDEPGVYITLSALPGGGGNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 980

[Close]

BLAST of Carg27236 vs. ExPASy TrEMBL
Match: A0A6J1G3V4 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450527 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 5.9e-70
Identity = 151/177 (85.31%), Postives = 152/177 (85.88%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ  LKEMADKM
Sbjct: 806 QVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ--LKEMADKM 865

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEAHSDILN CTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE
Sbjct: 866 PEAHSDILNCCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 925

Query: 219 WVVQDEPGV---------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                     RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 926 WVVQDEPGVYITLSALPGGGGNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 980

[Close]

BLAST of Carg27236 vs. ExPASy TrEMBL
Match: A0A1S4DUS6 (X-linked retinitis pigmentosa GTPase regulator-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485768 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 135/176 (76.70%), Postives = 140/176 (79.55%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIA DEA+KCKSAKEVIKSLA Q  LKEMA+KM
Sbjct: 662 QVQELTCKSKNLEAELEKTSKKLMEVTAIAADEAEKCKSAKEVIKSLAAQ--LKEMAEKM 721

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEA + I+N  TVSGQNGSNLNQL TESLSMSINSRLESNGISKSQ L TG K  NEK E
Sbjct: 722 PEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTVNEKAE 781

Query: 219 WVVQDEPGV--------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                    RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 782 WVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 835

[Close]

BLAST of Carg27236 vs. ExPASy TrEMBL
Match: A0A1S3B4R6 (X-linked retinitis pigmentosa GTPase regulator-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485768 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 135/176 (76.70%), Postives = 140/176 (79.55%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIA DEA+KCKSAKEVIKSLA Q  LKEMA+KM
Sbjct: 806 QVQELTCKSKNLEAELEKTSKKLMEVTAIAADEAEKCKSAKEVIKSLAAQ--LKEMAEKM 865

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEA + I+N  TVSGQNGSNLNQL TESLSMSINSRLESNGISKSQ L TG K  NEK E
Sbjct: 866 PEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTVNEKAE 925

Query: 219 WVVQDEPGV--------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                    RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 926 WVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 979

[Close]

BLAST of Carg27236 vs. ExPASy TrEMBL
Match: A0A1S3B416 (X-linked retinitis pigmentosa GTPase regulator-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485768 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.0e-58
Identity = 135/176 (76.70%), Postives = 140/176 (79.55%), Query Frame = 0


Query: 99  EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
           +VQELTCKSKNLEAELEKTSKKLMEVTAIA DEA+KCKSAKEVIKSLA Q  LKEMA+KM
Sbjct: 664 QVQELTCKSKNLEAELEKTSKKLMEVTAIAADEAEKCKSAKEVIKSLAAQ--LKEMAEKM 723

Query: 159 PEAHSDILNYCTVSGQNGSNLNQLPTESLSMSINSRLESNGISKSQNLPTGNKGQNEKGE 218
           PEA + I+N  TVSGQNGSNLNQL TESLSMSINSRLESNGISKSQ L TG K  NEK E
Sbjct: 724 PEAQTAIVNSSTVSGQNGSNLNQLSTESLSMSINSRLESNGISKSQTLSTGIKTVNEKAE 783

Query: 219 WVVQDEPGV--------------------RRHFTEAQAEKWWAEFGAKVCERHKGK 255
           WVVQDEPGV                    RRHFTEAQAEKWWAEFGAKVCERHK K
Sbjct: 784 WVVQDEPGVYITLSALPGGFNELKRVRFSRRHFTEAQAEKWWAEFGAKVCERHKVK 837

[Close]

BLAST of Carg27236 vs. TAIR 10
Match: AT1G69710.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 107.5 bits (267), Expect = 1.8e-23
Identity = 76/177 (42.94%), Postives = 102/177 (57.63%), Query Frame = 0


Query: 98   QEVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADK 157
            ++V++L  K+  LE ELEKT ++L  VTA+A DEA++ +SAKEVI+SL TQ  LKEMA+K
Sbjct: 864  EQVEQLASKAHQLEEELEKTKRQLKVVTAMAADEAEENRSAKEVIRSLTTQ--LKEMAEK 923

Query: 158  MPEAHSDILNYCTVSGQNGSNLNQLPTES---LSMSINSRLESNGISKSQNLPTGNKGQN 217
              +  S   N      +    + Q   ++     +S +S+ E+N  SKS     G++ QN
Sbjct: 924  QSQKDSISTNSKHTDKEKSETVTQTSNQTHIRSMVSQDSQNENNLTSKS--FANGHRKQN 983

Query: 218  EKGEWVVQDEPGV--------------------RRHFTEAQAEKWWAEFGAKVCERH 252
            +K E VVQDEPGV                    R+ FTE QAEKWW E GAKVCERH
Sbjct: 984  DKPEKVVQDEPGVYLTLLSLPGGGTELKRVRFSRKQFTEEQAEKWWGENGAKVCERH 1036

[Close]

BLAST of Carg27236 vs. TAIR 10
Match: AT5G12350.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-15
Identity = 64/185 (34.59%), Postives = 96/185 (51.89%), Query Frame = 0


Query: 99   EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
            +V+ LT K++  E ELE+T+K+L E  AI  +E  +CK+AKEVIKSL  Q  LK+MA+++
Sbjct: 880  QVESLTRKAQLQEVELERTTKQLKEALAITNEETTRCKAAKEVIKSLTAQ--LKDMAERL 939

Query: 159  PEAHSDILNYCTVSGQNGSNLNQL-PTESLSMSINSRLESNGISKSQ-----------NL 218
            P   +  +         GS+  ++ P   L+ + +   E NGI+              N 
Sbjct: 940  PVGSARTVKSPPSLNSFGSSPGRIDPFNILNQANSQESEPNGITTPMFSNGTMTPAFGNG 999

Query: 219  PTGNKGQNEKGEWVVQDEPGV--------------------RRHFTEAQAEKWWAEFGAK 252
               N+ +NEK EWV QDEPGV                    R+ F+E QAE+WWA+   +
Sbjct: 1000 EATNEARNEK-EWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNRGR 1059

[Close]

BLAST of Carg27236 vs. TAIR 10
Match: AT5G19420.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-13
Identity = 67/204 (32.84%), Postives = 102/204 (50.00%), Query Frame = 0


Query: 99   EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
            +V+ LT K++  E ELE+T+K+L E  AIA++E+ +CK+AKEVIKSL  Q  LK+MA+++
Sbjct: 884  QVENLTRKAQLQEVELERTTKQLKEALAIASEESARCKAAKEVIKSLTAQ--LKDMAERL 943

Query: 159  P-----EAHSDILN-------YCTVSGQNGSNLNQLPTESLSM----------------S 218
            P        S  LN       Y   S    +  N   T+S S+                S
Sbjct: 944  PVGSARTVKSPSLNSFGSSPDYAAPSSNTLNRPNSRETDSDSLTTVPMFSNGTSTPVFDS 1003

Query: 219  INSRLESNGISKSQNLPTGNKGQNE---KGEWVVQDEPGV-------------------- 252
             + R ++N  +++ N  +    ++E   + EWV QDEPGV                    
Sbjct: 1004 GSYRQQANHAAEAINRISTRSKESEPRNENEWVEQDEPGVYITLTALAGGARDLKRVRFS 1063

[Close]

BLAST of Carg27236 vs. TAIR 10
Match: AT5G19420.2 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-13
Identity = 67/204 (32.84%), Postives = 102/204 (50.00%), Query Frame = 0


Query: 99   EVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQNMLKEMADKM 158
            +V+ LT K++  E ELE+T+K+L E  AIA++E+ +CK+AKEVIKSL  Q  LK+MA+++
Sbjct: 918  QVENLTRKAQLQEVELERTTKQLKEALAIASEESARCKAAKEVIKSLTAQ--LKDMAERL 977

Query: 159  P-----EAHSDILN-------YCTVSGQNGSNLNQLPTESLSM----------------S 218
            P        S  LN       Y   S    +  N   T+S S+                S
Sbjct: 978  PVGSARTVKSPSLNSFGSSPDYAAPSSNTLNRPNSRETDSDSLTTVPMFSNGTSTPVFDS 1037

Query: 219  INSRLESNGISKSQNLPTGNKGQNE---KGEWVVQDEPGV-------------------- 252
             + R ++N  +++ N  +    ++E   + EWV QDEPGV                    
Sbjct: 1038 GSYRQQANHAAEAINRISTRSKESEPRNENEWVEQDEPGVYITLTALAGGARDLKRVRFS 1097

[Close]

BLAST of Carg27236 vs. TAIR 10
Match: AT3G47660.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 52.0 bits (123), Expect = 9.1e-07
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 92  EWTVEPQEVQELTCKSKNLEAELEKTSKKLMEVTAIATDEADKCKSAKEVIKSLATQ--N 151
           E +V   +V+ELT KSK LE EL KTSKKL     +A D+A+K KS++E+++SL  Q  N
Sbjct: 879 EISVLKAQVEELTLKSKKLETELGKTSKKLEVAVLMARDDAEKIKSSEEIVRSLTLQLMN 938

Query: 152 MLKEMADK 158
             K+  DK
Sbjct: 939 TTKKEVDK 946

The following BLAST results are available for this feature:

BLAST of Carg27236 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029960.1	1.5e-157	100.00	hypothetical protein SDJN02_08304, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598992.1	9.6e-83	85.37	PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma ...	[more]
XP_023546471.1	1.2e-69	85.31	PH, RCC1 and FYVE domains-containing protein 1-like isoform X1 [Cucurbita pepo s...	[more]
XP_022972822.1	1.2e-69	85.31	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima] >XP_02297...	[more]
XP_022946481.1	1.2e-69	85.31	PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata] >XP_022...	[more]

BLAST of Carg27236 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I9Q9	5.9e-70	85.31	PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1G3V4	5.9e-70	85.31	PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=366...	[more]
A0A1S4DUS6	3.0e-58	76.70	X-linked retinitis pigmentosa GTPase regulator-like isoform X4 OS=Cucumis melo O...	[more]
A0A1S3B4R6	3.0e-58	76.70	X-linked retinitis pigmentosa GTPase regulator-like isoform X1 OS=Cucumis melo O...	[more]
A0A1S3B416	3.0e-58	76.70	X-linked retinitis pigmentosa GTPase regulator-like isoform X3 OS=Cucumis melo O...	[more]

BLAST of Carg27236 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G69710.1	1.8e-23	42.94	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G12350.1	1.1e-15	34.59	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G19420.1	2.2e-13	32.84	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT5G19420.2	2.2e-13	32.84	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain	[more]
AT3G47660.1	9.1e-07	48.53	Regulator of chromosome condensation (RCC1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..212
None	No IPR available	PANTHER	PTHR22870:SF358	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 98..252
None	No IPR available	PANTHER	PTHR22870	REGULATOR OF CHROMOSOME CONDENSATION	coord: 98..252
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: 5.0
IPR027988	Transcription factor BREVIS RADIX, N-terminal domain	PFAM	PF13713	BRX_N	coord: 130..164 e-value: 5.2E-10 score: 38.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27236-RA	Carg27236-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding