Carg27229 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27229
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Trafficking protein particle complex subunit
Location	Carg_Chr05: 6444840 .. 6446708 (-)
RNA-Seq Expression	Carg27229
Synteny	Carg27229

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGTAATCAACATAATGCAATTATAAACTAAATTTCTGCTAATTCCCCTCTGGATTTGGAGTTTTGATGCTTAATTTGGTATCTGAAACGAAAAACAAATATGAACCCCAAATCATGATTCCAGTTTGTTCATCAGATTTTCAATCGACCTTTCTAAAACTCATGAATTATAAACCGGTTATCGGTGGAATTATTTTAATCTTCATTCAGTATTTTATGTGGATTGAATCTGTTATTGTGTTTGTTTTGAAAATTTAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTAAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGTACATTTTTTTCTTCCACTACTTTGTTTAATTTGTGCTTCAAACGCATGGATTCTGTCTCAAACTCTGTTTCAAAGACATGCAATCAAATTCCTAATGTGAAAGCACAATTGAAGTTCTAGAAGTGTTATTCATCTCTTGTGAAATCTTATATTGGTCGGAGAGATGAACAATACATTTCTTATAAGGGTGTAGAAACCTCTCACCTAGCAGAGGTTTTTTAAAACCTTGAGAGGAAACCCGAAAGTAAAAGCTCAAAGAAGACAATATCTGCTAGCGGTGGGCTTGGACTGTTACAAATGGTATCAGAGCCATACACCGGGCAATGTGCTAGCGAGGACGCTAGACCCCAAGGGGGTGGATTGTGAGATCCTACATCGGTTGGAGAGGGGAACAAAATATTTCTTATAAGAGTGTGAAAACCTCTCCCTAGCAAACACGTTTTAAAACCTTGAGGAGAAGCTCGAAAGTGAAAGTTCAAAGAGGACATTATCTGCTAGCGGTGGACTTGGGTTGTTACAAATGGATTAGAGCCATACACCGGGCGATGTGCTAGCAAGGATGCTGGCCCCAAGAAGGTGGATTGTGAGATCCTACATCGGTTGTAGAGGGGGACACAAACATTTTTTTTTATAAGGGCGTGGAAACCTCTCCTTAGTAGACGCATTTTAAAACCTTGAGAGAAAGCCCGTAAGGGAAAACCCGAAAAGGACAATATCTGCTACGGTGAGTTTGAGCTGTTACATCTTTCTTGTCTTGAGACCAACAATATATGGGGTATCAAACTTAACCTTTGTTGAGATTATAATGCCTTAATTAGTCGAGTGAGATTATAATGCCTTAATTAGTCGAGTTATATTCCGTTTGGAAAAATGTAGCTTCTTTATGATCATATTACAATGTCTTCATCACAGATATGATTGTGCTGTCTGATATTTTCAAAGTCTCTCGACATCAACTTATCATGTTGTTGCCCAAATAATTGATAATTTGCCTGCTAAATGTACTCCATGGTCCTTTTCAGTGTTCACCGGATAATCATGGTTCATTTTATAGCCAATTTTTTGTCAATGGTATACACAACTGAATCCAGGCTTTGAGCTTTGGGGCATGAGTTGCAGCAATGTGCCACCAAATAAACACAAGCACCCAAATAATCAACGTTTTACTTAGATCAGTTTGTTGTTACATGTTTTCATGTCAGCCAAATCTCAAATTTTTCTGCATTGTTATGATATTATTACTGACTCGATGCTCGTGCTTGTGTGTATATAAAGGGTTAGCTGTAGATCAAGCCTTCTCAACAGATGAAGAGTGTGTCAGGACAATGAACCAATTCTACAATTCTCAAGAGCAGCTCTGTTGCCGGATCGTTGCACTATGA

mRNA sequence

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTAAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGATCAAGCCTTCTCAACAGATGAAGAGTGTGTCAGGACAATGAACCAATTCTACAATTCTCAAGAGCAGCTCTGTTGCCGGATCGTTGCACTATGA

Coding sequence (CDS)

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGATAGCTTAAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGATCAAGCCTTCTCAACAGATGAAGAGTGTGTCAGGACAATGAACCAATTCTACAATTCTCAAGAGCAGCTCTGTTGCCGGATCGTTGCACTATGA

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQLCCRIVAL

Homology

[Close]

BLAST of Carg27229 vs. NCBI nr
Match: KAG7029967.1 (Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.3 bits (560), Expect = 7.9e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQLCCRIVAL 108
           LLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQLCCRIVAL
Sbjct: 61  LLEADTFDLHCFQSLTDQAFSTDEECVRTMNQFYNSQEQLCCRIVAL 107

[Close]

BLAST of Carg27229 vs. NCBI nr
Match: XP_022946574.1 (trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022946710.1 trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022999309.1 trafficking protein particle complex subunit 4-like [Cucurbita maxima] >XP_022999558.1 trafficking protein particle complex subunit 4-like [Cucurbita maxima] >XP_023545338.1 trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo] >KAG6599001.1 Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. NCBI nr
Match: KAG7030109.1 (Trafficking protein particle complex subunit 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. NCBI nr
Match: XP_023521099.1 (trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo] >XP_023522176.1 trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. NCBI nr
Match: KAG6599171.1 (Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 46  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 105

Query: 61  LLEADTFDLHCFQSLTDQAF 81
           LLEADTFDLHCFQSLT   F
Sbjct: 106 LLEADTFDLHCFQSLTGTKF 125

[Close]

BLAST of Carg27229 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-13
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 4  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGTELL 63
          I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP+SG  SG E++
Sbjct: 3  INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64 EADTFDLHCFQSLTDQAF 81
          E + F L CFQ+ T   F
Sbjct: 63 ETEAFKLQCFQTHTGIKF 80

[Close]

BLAST of Carg27229 vs. ExPASy Swiss-Prot
Match: O43041 (Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=trs23 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-11
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 4  IYSLYIINKSGGLIFYKDYGSA-GRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELL 63
          +++L IIN++G LIF +++GS+   +  N+ L +A   H +HAIS Q+SP+ G SG +LL
Sbjct: 1  MHALIIINRAGSLIFQREFGSSPTALTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLL 60

Query: 64 EADTFDLHCFQSLTDQAF 81
          EA TF++H  Q+ T   F
Sbjct: 61 EAGTFNMHILQTHTGMKF 78

[Close]

BLAST of Carg27229 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-10
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF 81
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LT   F
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKF 155

[Close]

BLAST of Carg27229 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-10
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF 81
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LT   F
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKF 155

[Close]

BLAST of Carg27229 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-10
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTDQAF 81
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LT   F
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKF 155

[Close]

BLAST of Carg27229 vs. ExPASy TrEMBL
Match: A0A6J1KK16 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111493886 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. ExPASy TrEMBL
Match: A0A6J1G4Q4 (Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111450702 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. ExPASy TrEMBL
Match: A0A6J1DUU4 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111023297 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.9e-35
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSG E
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. ExPASy TrEMBL
Match: A0A5A7TWY1 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00730 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. ExPASy TrEMBL
Match: A0A0A0LJ20 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2G034720 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSLT   F
Sbjct: 61 LLEADTFDLHCFQSLTGTKF 80

[Close]

BLAST of Carg27229 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 145.6 bits (366), Expect = 2.3e-35
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
          MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP++GCSG E
Sbjct: 1  MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61 LLEADTFDLHCFQSLTDQAF 81
          LLEADTFDLHCFQSL    F
Sbjct: 61 LLEADTFDLHCFQSLPGTKF 80

The following BLAST results are available for this feature:

BLAST of Carg27229 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7029967.1	7.9e-54	100.00	Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma ...	[more]
XP_022946574.1	3.7e-35	96.25	trafficking protein particle complex subunit 4-like [Cucurbita moschata] >XP_022...	[more]
KAG7030109.1	3.7e-35	96.25	Trafficking protein particle complex subunit 4 [Cucurbita argyrosperma subsp. ar...	[more]
XP_023521099.1	3.7e-35	96.25	trafficking protein particle complex subunit 4-like [Cucurbita pepo subsp. pepo]...	[more]
KAG6599171.1	3.7e-35	96.25	Trafficking protein particle complex subunit 4, partial [Cucurbita argyrosperma ...	[more]

BLAST of Carg27229 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54UU1	7.0e-13	44.87	Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44...	[more]
O43041	5.0e-11	43.59	Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q2TBL9	5.6e-10	55.56	Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ...	[more]
Q9ES56	5.6e-10	55.56	Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q69BT7	5.6e-10	55.56	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of Carg27229 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KK16	1.8e-35	96.25	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G4Q4	1.8e-35	96.25	Trafficking protein particle complex subunit OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1DUU4	8.9e-35	95.00	Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5A7TWY1	1.5e-34	93.75	Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0LJ20	1.5e-34	93.75	Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]

BLAST of Carg27229 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02280.1	2.3e-35	87.50	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 4..104 e-value: 5.7E-16 score: 69.1
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 4..77 e-value: 3.2E-23 score: 82.2
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	coord: 1..82
None	No IPR available	GENE3D	3.30.450.70		coord: 2..103 e-value: 8.7E-22 score: 79.8
None	No IPR available	PANTHER	PTHR23249:SF17	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATED	coord: 1..82
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27229-RA	Carg27229-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0030008	TRAPP complex