Carg27154 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27154
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Beta-adaptin-like protein
Location	Carg_Chr11: 12057244 .. 12058310 (-)
RNA-Seq Expression	Carg27154
Synteny	Carg27154

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGTAACTTCAGAGTCTACGAGTTCCTTCGGGATCTTCATTTTAATTGTTGAGATCAAAAGATGAAGAGATTTTATTTTTCATGAATTATTTCTTAGATGGGGATCAGACAATCGACTTTTGAAATCGTAAATTTAATGTCAATCGAGTATATGTATCAACCAGATTATCACGTTGAGACCTACCAGTGCATGTTAGGTTGTGTTGAGTCAAATCAGCTCTATTTTTGGTCTCTGATCAATACCAATTTAGCTGCTTGATCAAGCGTAGATGCTTATAACTCACTGTATCTGTAGATGCTTATAACTCACTGTATCTGTAGATGCTTATATAGTGTACCTTAAGGAGCTGCTGGATCAAGCGTAGATGCTTATACTATAGTGTACCTTTGCTAGAATAAGGATTAAAGTAGATGATTCAGCTCATTATCTCTACTAGCATGATTTCAATTGCTAAATCTTTTGCAGGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGGTAAAAAATGATATAGAAATAGTAGAATGCACACTTCAACTGTTCATCTTCTCTGTGGCATTAACTATCTTTTTCATTTCAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGACTGGCTGCAACGAACATGTTCTTGATTGTCAAAACAAAGCATGCGAACCAGGATGTTTTCTACTTCTCTACAAAATTCCTCAGAGGAATCCCTTTGTT

mRNA sequence

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGACTGGCTGCAACGAACATGTTCTTGATTGTCAAAACAAAGCATGCGAACCAGGATGTTTTCTACTTCTCTACAAAATTCCTCAGAGGAATCCCTTTGTT

Coding sequence (CDS)

ATGCTTGGAAAGGCAGATTTGCATGAACAGCAATGTAACAATGTTGAATTGGCATTTAACTGGATATTTGATAGAAACTCGGTTGTTGCTCTTTTGAATAATGCTACTGTGGAGACGGATGATCCTGATTTGCGTTATCGTGCGTATATCTATTGGCGTCTCCTATCGACTGATCCAGAGGTTGTGTTCCAAAACATGTCTCAAGGTCCTCCAAGCTCACTTTTGCAGGTAGCTGTGAAGAACAATCAACATCCAGTGTGGTATTTCAATGATAAAATTTCTATGCACATTTTCTTTGCCGAGGATGGGACGATGGAGCGTACAAACTTTCTCGAGACTTGGAGGTCCCTTCCAGATTCGAATGAAGTTTCTAGAGATTTTTCGACCATTCTTATAAACAATGTTGACGCCATTGTCGACTGA

Protein sequence

MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNEVSRDFSTILINNVDAIVD

Homology

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: KAG6589148.1 (Beta-adaptin-like protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293.9 bits (751), Expect = 7.4e-76
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 60
           MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE
Sbjct: 10  MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 69

Query: 61  VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS 120
           VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS
Sbjct: 70  VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS 129

Query: 121 NEVSRDFSTILINNVDAIVD 141
           NEVSRDFSTILINNVDAIVD
Sbjct: 130 NEVSRDFSTILINNVDAIVD 149

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: KAG7022848.1 (Beta-adaptin-like protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.9 bits (751), Expect = 7.4e-76
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 60
           MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE
Sbjct: 1   MLGKADLHEQQCNNVELAFNWIFDRNSVVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 60

Query: 61  VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS 120
           VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS
Sbjct: 61  VVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDS 120

Query: 121 NEVSRDFSTILINNVDAIVD 141
           NEVSRDFSTILINNVDAIVD
Sbjct: 121 NEVSRDFSTILINNVDAIVD 140

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_022157680.1 (beta-adaptin-like protein B [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-32
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF EDG MER NFLETWRSLP
Sbjct: 752 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTEDGRMERANFLETWRSLP 811

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++NN+++++D
Sbjct: 812 DSNEVSKDFPAIVLNNIESVLD 833

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_022157680.1 (beta-adaptin-like protein B [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

HSP 2 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMHIFF EDG MER +FLETWRSLP
Sbjct: 752 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHIFFTEDGRMERASFLETWRSLP 811

Query: 119 DSNEVSRDFSTILINNVDAI 139
           DSNEV+RDF  +LINNV+AI
Sbjct: 812 DSNEVTRDFPALLINNVEAI 831

[Close]

BLAST of Carg27154 vs. NCBI nr
Match: XP_038888500.1 (beta-adaptin-like protein C [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-07
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE-----VVFQNMSQGPPSSLLQVAV 80
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE     V+ +    G  S+LL  A+
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVIGDDSNLLDSAL 560

HSP 2 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 748 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 807

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 808 DSNEVSKDFPAIVLTNMEAVLE 829

[Close]

BLAST of Carg27154 vs. ExPASy Swiss-Prot
Match: Q9SUS3 (Beta-adaptin-like protein B OS=Arabidopsis thaliana OX=3702 GN=BETAB-AD PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.6e-27
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQNMS GPPSSLLQVAVKNNQ PVWYF DKI +H  F EDG MER  FLETWRSLP
Sbjct: 742 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFTDKIILHALFGEDGRMERGTFLETWRSLP 801

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ ++
Sbjct: 802 DSNEVLKEFPGITITSVESTIE 823

HSP 2 Score: 61.6 bits (148), Expect = 8.1e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. ExPASy Swiss-Prot
Match: O81742 (Beta-adaptin-like protein C OS=Arabidopsis thaliana OX=3702 GN=BETAC-AD PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+ QNMS G  SS+LQVAVKNNQ PVWYF DKI ++  F+EDG MER  FLETW+SLP
Sbjct: 741 PMVLSQNMSTGSTSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLP 800

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ +D
Sbjct: 801 DSNEVQKEFPGITITSVESTLD 822

HSP 2 Score: 61.6 bits (148), Expect = 8.1e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. ExPASy Swiss-Prot
Match: Q10567 (AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-07
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNE 123
           P + LQVAVKNN   V+YF+    +HI F EDG M+R  FL TW+ +P+ NE
Sbjct: 808 PLNNLQVAVKNN-IDVFYFSTLYPLHILFVEDGKMDRQMFLATWKDIPNENE 858

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154 vs. ExPASy Swiss-Prot
Match: P52303 (AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-07
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNE 123
           P + LQVAVKNN   V+YF+    +H+ F EDG M+R  FL TW+ +P+ NE
Sbjct: 811 PLNNLQVAVKNN-IDVFYFSTLYPLHVLFVEDGKMDRQMFLATWKDIPNENE 861

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154 vs. ExPASy Swiss-Prot
Match: Q08DS7 (AP-1 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP2B1 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-07
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 71  PSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLPDSNEV 124
           P + LQVAVKNN   V+YF+  I +++ F EDG MER  FL TW+ +P+ NE+
Sbjct: 813 PLNNLQVAVKNN-IDVFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENEL 864

HSP 2 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDP 60
           V  +L+ AT ++D+PDLR R YIYWRLLSTDP
Sbjct: 503 VQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP 534

[Close]

BLAST of Carg27154 vs. ExPASy TrEMBL
Match: A0A6J1DTS4 (Beta-adaptin-like protein OS=Momordica charantia OX=3673 GN=LOC111024335 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.4e-32
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF EDG MER NFLETWRSLP
Sbjct: 752 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTEDGRMERANFLETWRSLP 811

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++NN+++++D
Sbjct: 812 DSNEVSKDFPAIVLNNIESVLD 833

[Close]

BLAST of Carg27154 vs. ExPASy TrEMBL
Match: A0A6J1DTS4 (Beta-adaptin-like protein OS=Momordica charantia OX=3673 GN=LOC111024335 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           + A+LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQAVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

HSP 2 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 748 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 807

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 808 DSNEVSKDFPAIVLTNMEAVLE 829

[Close]

BLAST of Carg27154 vs. ExPASy TrEMBL
Match: A0A6J1HZA3 (Beta-adaptin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469012 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

HSP 2 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 706 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 765

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 766 DSNEVSKDFPAIVLTNMEAVLE 787

[Close]

BLAST of Carg27154 vs. ExPASy TrEMBL
Match: A0A6J1I2I3 (beta-adaptin-like protein B isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111469012 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 462 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 494

HSP 2 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQNMSQGPPSSLLQVAVKNNQ PVWYFNDKISMH+FF +DG MER NFLETWRSLP
Sbjct: 730 PMVVFQNMSQGPPSSLLQVAVKNNQQPVWYFNDKISMHVFFTDDGRMERANFLETWRSLP 789

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  I++ N++A+++
Sbjct: 790 DSNEVSKDFPAIVLTNMEAVLE 811

[Close]

BLAST of Carg27154 vs. ExPASy TrEMBL
Match: A0A6J1HXU4 (beta-adaptin-like protein B isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469012 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 486 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 518

HSP 2 Score: 143.7 bits (361), Expect = 6.0e-31
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P VVFQN+SQGPPSSLLQVAVKNNQ PVWYFNDKISMHIFF +DG MER NFLETWRSLP
Sbjct: 751 PMVVFQNLSQGPPSSLLQVAVKNNQQPVWYFNDKISMHIFFTDDGRMERANFLETWRSLP 810

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEVS+DF  + I NV+A+++
Sbjct: 811 DSNEVSKDFPALFITNVEAVLE 832

[Close]

BLAST of Carg27154 vs. TAIR 10
Match: AT4G11380.1 (Adaptin family protein )

HSP 1 Score: 121.3 bits (303), Expect = 6.1e-28
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQNMS GPPSSLLQVAVKNNQ PVWYF DKI +H  F EDG MER  FLETWRSLP
Sbjct: 742 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFTDKIILHALFGEDGRMERGTFLETWRSLP 801

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ ++
Sbjct: 802 DSNEVLKEFPGITITSVESTIE 823

HSP 2 Score: 61.6 bits (148), Expect = 5.7e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

[Close]

BLAST of Carg27154 vs. TAIR 10
Match: AT4G11380.2 (Adaptin family protein )

HSP 1 Score: 121.3 bits (303), Expect = 6.1e-28
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+FQNMS GPPSSLLQVAVKNNQ PVWYF DKI +H  F EDG MER  FLETWRSLP
Sbjct: 764 PMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFTDKIILHALFGEDGRMERGTFLETWRSLP 823

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ ++
Sbjct: 824 DSNEVLKEFPGITITSVESTIE 845

HSP 2 Score: 61.6 bits (148), Expect = 5.7e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 526 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 558

[Close]

BLAST of Carg27154 vs. TAIR 10
Match: AT4G23460.1 (Adaptin family protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-24
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 59  PEVVFQNMSQGPPSSLLQVAVKNNQHPVWYFNDKISMHIFFAEDGTMERTNFLETWRSLP 118
           P V+ QNMS G  SS+LQVAVKNNQ PVWYF DKI ++  F+EDG MER  FLETW+SLP
Sbjct: 741 PMVLSQNMSTGSTSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLETWKSLP 800

Query: 119 DSNEVSRDFSTILINNVDAIVD 141
           DSNEV ++F  I I +V++ +D
Sbjct: 801 DSNEVQKEFPGITITSVESTLD 822

HSP 2 Score: 61.6 bits (148), Expect = 5.7e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 28  VVALLNNATVETDDPDLRYRAYIYWRLLSTDPE 61
           +  +LNNATVETD+PDLR RAYIYWRLLSTDPE
Sbjct: 504 IQVVLNNATVETDNPDLRDRAYIYWRLLSTDPE 536

The following BLAST results are available for this feature:

BLAST of Carg27154 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589148.1	7.4e-76	100.00	Beta-adaptin-like protein B, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7022848.1	7.4e-76	100.00	Beta-adaptin-like protein B, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022157680.1	5.0e-32	80.49	beta-adaptin-like protein B [Momordica charantia]	[more]
XP_022157680.1	2.1e-06	84.85	beta-adaptin-like protein B [Momordica charantia]	[more]
XP_038888500.1	7.3e-07	59.65	beta-adaptin-like protein C [Benincasa hispida]	[more]

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BLAST of Carg27154 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUS3	8.6e-27	68.29	Beta-adaptin-like protein B OS=Arabidopsis thaliana OX=3702 GN=BETAB-AD PE=1 SV=...	[more]
O81742	4.4e-23	62.20	Beta-adaptin-like protein C OS=Arabidopsis thaliana OX=3702 GN=BETAC-AD PE=1 SV=...	[more]
Q10567	3.4e-07	51.92	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=2	[more]
P52303	4.4e-07	50.00	AP-1 complex subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Ap1b1 PE=1 SV=1	[more]
Q08DS7	5.8e-07	50.94	AP-1 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP2B1 PE=2 SV=1	[more]

BLAST of Carg27154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTS4	2.4e-32	80.49	Beta-adaptin-like protein OS=Momordica charantia OX=3673 GN=LOC111024335 PE=3 SV...	[more]
A0A6J1DTS4	1.0e-06	84.85	Beta-adaptin-like protein OS=Momordica charantia OX=3673 GN=LOC111024335 PE=3 SV...	[more]
A0A6J1HZA3	3.0e-06	81.82	Beta-adaptin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469012 PE=3 SV=1	[more]
A0A6J1I2I3	3.0e-06	81.82	beta-adaptin-like protein B isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114690...	[more]
A0A6J1HXU4	3.0e-06	81.82	beta-adaptin-like protein B isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114690...	[more]

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BLAST of Carg27154 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11380.1	6.1e-28	68.29	Adaptin family protein	[more]
AT4G11380.2	6.1e-28	68.29	Adaptin family protein	[more]
AT4G23460.1	3.1e-24	62.20	Adaptin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015151	Beta-adaptin appendage, C-terminal subdomain	PFAM	PF09066	B2-adapt-app_C	coord: 101..138 e-value: 1.4E-6 score: 28.3
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 8..92 e-value: 3.2E-6 score: 27.8
IPR012295	TBP domain superfamily	GENE3D	3.30.310.10		coord: 95..140 e-value: 1.5E-10 score: 43.0
None	No IPR available	PANTHER	PTHR11134:SF30	BETA-ADAPTIN-LIKE PROTEIN B	coord: 59..140
None	No IPR available	PANTHER	PTHR11134:SF30	BETA-ADAPTIN-LIKE PROTEIN B	coord: 29..61
IPR026739	AP complex subunit beta	PANTHER	PTHR11134	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	coord: 29..61
IPR026739	AP complex subunit beta	PANTHER	PTHR11134	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	coord: 59..140
IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	SUPERFAMILY	49348	Clathrin adaptor appendage domain	coord: 61..96
IPR009028	Coatomer/calthrin adaptor appendage, C-terminal subdomain	SUPERFAMILY	55711	Subdomain of clathrin and coatomer appendage domain	coord: 98..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27154-RA	Carg27154-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030131	clathrin adaptor complex
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0030276	clathrin binding