Carg27152 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27152
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Coiled-coil domain-containing protein 21, putative isoform 2
Location	Carg_Chr11: 12060839 .. 12061496 (-)
RNA-Seq Expression	Carg27152
Synteny	Carg27152

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCTAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTCACAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGGTAACCCTCCAAATGAAACAACTCTGTTTCTCTATCCCTCATCCTAATCAGTAGAGCTTTGGTTTCCCATGTAGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGTAAACATGGATTCAACCTCTTATCTCTTCATAATCTTTGTATATGCACATATATTTCCGTTAAACTCGGGTCGTGGAAACGTCGTTTTCGCAGGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGTATGTCATTATCATTTGTGATCCACACAGCATTCTCCCCTGTTGCGTGTTCGTTATCTAACCAGGGTTGTTTTTCGAGTTTTAGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGTTCTAAGACTCCCAAC

mRNA sequence

TGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCTAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTCACAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGTTCTAAGACTCCCAAC

Coding sequence (CDS)

TGGGAATTGCCTCAATACGAAAACTCAGTAGTGGCCTCAACAGCTAACGACTTAAGAACCGACAAGCACACCTCTATTAATCCTCACAAGTTGAAGGCTGCTGCTGAAGGCCTTACAAATGTTGGAAAGGCATTTGGTGTATCTACTGCGCTTGTCTTTGGTGGCTCCACCTTCATCTTTGGGTTCACCATGTCCAAGCTAGACCTCAACAATGCCGATGAGATTCAACAAAAAGGAAGAAGCATGTTTGAACCAAAGATAGAGATGGTTAGAGAGCAACTAGCTCCCCTCAAAGTCTGGGCTGATGATATGTCGAAGAAATGGCGTGTTGAGAGAAATGGCGATATGAAAGAGAAGCCTCTCATAAAGGAACTATCAAAGATTTTGGGTTCTAAGACTCCCAAC

Protein sequence

WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIFGFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKPLIKELSKILGSKTPN

Homology

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BLAST of Carg27152 vs. NCBI nr
Match: KAG7022850.1 (hypothetical protein SDJN02_16586, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP
Sbjct: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 121 LIKELSKILGSKTPN 135

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: KAG6589150.1 (hypothetical protein SDJN03_17715, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270.8 bits (691), Expect = 6.4e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 121 WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP
Sbjct: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 241 LIKELSKILGSKTPN 255

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_022930732.1 (uncharacterized protein LOC111437124 [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 7.1e-68
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDKHTSINP KLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP
Sbjct: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 241 LIKELSKILGSKTPN 255

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_023531801.1 (uncharacterized protein LOC111793948 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.6 bits (649), Expect = 4.8e-64
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDKHTSINP KLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNADEIQQKGRSM EPKI MVREQLAPLKVWADDMSKKW V+RN D+KEKP
Sbjct: 181 GFTMSKLDLNNADEIQQKGRSMIEPKIGMVREQLAPLKVWADDMSKKWHVDRNEDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 241 LIKELSKILGSKTPN 255

[Close]

BLAST of Carg27152 vs. NCBI nr
Match: XP_022988910.1 (uncharacterized protein LOC111486122 [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 6.9e-63
Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDK TSINP KLKAAAEGLTNVGKAFGV+TA VFGGST IF
Sbjct: 117 WELPQYENSVVASTANDLRTDKLTSINPEKLKAAAEGLTNVGKAFGVATAFVFGGSTLIF 176

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNA+EIQQKGRSM EPKIEMVREQLAPLKVWADDMSKKW VERNGD+KEKP
Sbjct: 177 GFTMSKLDLNNANEIQQKGRSMIEPKIEMVREQLAPLKVWADDMSKKWHVERNGDIKEKP 236

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 237 LIKELSKILGSKTPN 251

[Close]

BLAST of Carg27152 vs. ExPASy TrEMBL
Match: A0A6J1ERF2 (uncharacterized protein LOC111437124 OS=Cucurbita moschata OX=3662 GN=LOC111437124 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.4e-68
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDKHTSINP KLKAAAEGLTNVGKAFGVSTALVFGGSTFIF
Sbjct: 121 WELPQYENSVVASTANDLRTDKHTSINPKKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP
Sbjct: 181 GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 241 LIKELSKILGSKTPN 255

[Close]

BLAST of Carg27152 vs. ExPASy TrEMBL
Match: A0A6J1JKW8 (uncharacterized protein LOC111486122 OS=Cucurbita maxima OX=3661 GN=LOC111486122 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.3e-63
Identity = 126/135 (93.33%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQYENSVVASTANDLRTDK TSINP KLKAAAEGLTNVGKAFGV+TA VFGGST IF
Sbjct: 117 WELPQYENSVVASTANDLRTDKLTSINPEKLKAAAEGLTNVGKAFGVATAFVFGGSTLIF 176

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLDLNNA+EIQQKGRSM EPKIEMVREQLAPLKVWADDMSKKW VERNGD+KEKP
Sbjct: 177 GFTMSKLDLNNANEIQQKGRSMIEPKIEMVREQLAPLKVWADDMSKKWHVERNGDIKEKP 236

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILGSKTPN
Sbjct: 237 LIKELSKILGSKTPN 251

[Close]

BLAST of Carg27152 vs. ExPASy TrEMBL
Match: A0A0A0K240 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQ ENS++ASTANDLRTDKHT INP KLKAAAEGL +VGKAF  +TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPINPEKLKAAAEGLAHVGKAFAAATALVFGGATLIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFT+SKLD+NNA EIQ KG+ M EPK+EM+R+QL P KVWADDMSKKW VER+ D+KEKP
Sbjct: 181 GFTLSKLDVNNASEIQTKGKGMIEPKMEMIRQQLVPFKVWADDMSKKWHVERDNDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILG+KTPN
Sbjct: 241 LIKELSKILGAKTPN 255

[Close]

BLAST of Carg27152 vs. ExPASy TrEMBL
Match: A0A1S3C0Z0 (uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.7e-54
Identity = 106/135 (78.52%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQ ENS++ASTANDLRTDKHT +NP KLKAAAEGL +VGKAF V+TALVFGG+T IF
Sbjct: 121 WELPQSENSILASTANDLRTDKHTPMNPEKLKAAAEGLAHVGKAFAVATALVFGGATLIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFTMSKLD+NNA EIQ KG+SM EPK+EM+R+Q  P KVWADD+SKKW VER+ D+KEKP
Sbjct: 181 GFTMSKLDVNNASEIQTKGKSMIEPKMEMIRQQFVPFKVWADDVSKKWHVERDNDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSKILG+KTPN
Sbjct: 241 LIKELSKILGAKTPN 255

[Close]

BLAST of Carg27152 vs. ExPASy TrEMBL
Match: A0A6J1C1Z9 (uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007726 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 104/135 (77.04%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKHTSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFIF 60
           WELPQ ENSV+ASTANDLR DKHT+INP KLKAAAEGL +VGKAF ++TALVFGG+T IF
Sbjct: 121 WELPQSENSVLASTANDLRADKHTTINPEKLKAAAEGLAHVGKAFAIATALVFGGATLIF 180

Query: 61  GFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNGDMKEKP 120
           GFT+SKLDLNN++EIQ KGR++ EPK+EM+REQL P K WA+DMSKKW VER+ D+KEKP
Sbjct: 181 GFTVSKLDLNNSNEIQTKGRNLIEPKMEMIREQLVPFKTWAEDMSKKWHVERDKDIKEKP 240

Query: 121 LIKELSKILGSKTPN 136
           LIKELSK LG+KTPN
Sbjct: 241 LIKELSKTLGAKTPN 255

[Close]

BLAST of Carg27152 vs. TAIR 10
Match: AT1G05060.1 (unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 165.2 bits (417), Expect = 3.5e-41
Identity = 76/136 (55.88%), Postives = 108/136 (79.41%), Query Frame = 0


Query: 1   WELPQYENSVVASTANDLRTDKH-TSINPHKLKAAAEGLTNVGKAFGVSTALVFGGSTFI 60
           W+LP+ ENSV+ASTAN+LR D++ T +NP KLKAA EGL ++GKAF  +T ++FG +T +
Sbjct: 118 WDLPESENSVLASTANELRRDRYGTPVNPEKLKAAGEGLQHIGKAFAAATIIIFGSATLV 177

Query: 61  FGFTMSKLDLNNADEIQQKGRSMFEPKIEMVREQLAPLKVWADDMSKKWRVERNG--DMK 120
           FG   SKLD+ NAD+I+ KG+ +F+PK+E ++EQ+ PL+ WA++MSKKW +E  G   +K
Sbjct: 178 FGTAASKLDMRNADDIRTKGKDLFQPKLESMKEQVEPLRTWAENMSKKWHIENEGGNTIK 237

Query: 121 EKPLIKELSKILGSKT 134
           EKP++KELSKILG K+
Sbjct: 238 EKPILKELSKILGPKS 253

The following BLAST results are available for this feature:

BLAST of Carg27152 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022850.1	6.4e-69	100.00	hypothetical protein SDJN02_16586, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589150.1	6.4e-69	100.00	hypothetical protein SDJN03_17715, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930732.1	7.1e-68	99.26	uncharacterized protein LOC111437124 [Cucurbita moschata]	[more]
XP_023531801.1	4.8e-64	94.81	uncharacterized protein LOC111793948 [Cucurbita pepo subsp. pepo]	[more]
XP_022988910.1	6.9e-63	93.33	uncharacterized protein LOC111486122 [Cucurbita maxima]	[more]

BLAST of Carg27152 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg27152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERF2	3.4e-68	99.26	uncharacterized protein LOC111437124 OS=Cucurbita moschata OX=3662 GN=LOC1114371...	[more]
A0A6J1JKW8	3.3e-63	93.33	uncharacterized protein LOC111486122 OS=Cucurbita maxima OX=3661 GN=LOC111486122...	[more]
A0A0A0K240	1.7e-54	78.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041920 PE=4 SV=1	[more]
A0A1S3C0Z0	1.7e-54	78.52	uncharacterized protein LOC103495622 OS=Cucumis melo OX=3656 GN=LOC103495622 PE=...	[more]
A0A6J1C1Z9	2.4e-53	77.04	uncharacterized protein LOC111007726 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Carg27152 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05060.1	3.5e-41	55.88	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36704	PROTEIN, PUTATIVE-RELATED	coord: 1..134
None	No IPR available	PANTHER	PTHR36704:SF1	PROTEIN, PUTATIVE-RELATED	coord: 1..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27152-RA	Carg27152-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane