Carg27132 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27132
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 9205862 .. 9206215 (-)
RNA-Seq ExpressionCarg27132
SyntenyCarg27132
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCAACCCTATGAGCCAGAAGAAGGGCAGCCTGGGGCGGGACTGCGGCGGGGGATGCGGTTTCGGAGGCGACGAATGCCAGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTTGTGGCGTGGGGGAGGATGCTGAGGAAGATAAGGCTAAGATGGGTGAAACTGAAATGCATAGCCATGGTGAAGAAGATGAAAGAATACTACACAAGGTTGATGAAGGATATCATAGAGGCAGGAGCCTATGCTCACTCTTATCAACATAGGGTTCTCTTGGAGACTTCTTTTGCCATTCCAATTCTCGGTGTCTCGCTCTCTACTCATTCCAGTGTTCTTGCTGCCACTTCGTAA

mRNA sequence

ATGGGTCAACCCTATGAGCCAGAAGAAGGGCAGCCTGGGGCGGGACTGCGGCGGGGGATGCGGTTTCGGAGGCGACGAATGCCAGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTTGTGGCGTGGGGGAGGATGCTGAGGAAGATAAGGCTAAGATGGGTGAAACTGAAATGCATAGCCATGGTGAAGAAGATGAAAGAATACTACACAAGGTTGATGAAGGATATCATAGAGGCAGGAGCCTATGCTCACTCTTATCAACATAGGGTTCTCTTGGAGACTTCTTTTGCCATTCCAATTCTCGGTGTCTCGCTCTCTACTCATTCCAGTGTTCTTGCTGCCACTTCGTAA

Coding sequence (CDS)

ATGGGTCAACCCTATGAGCCAGAAGAAGGGCAGCCTGGGGCGGGACTGCGGCGGGGGATGCGGTTTCGGAGGCGACGAATGCCAGTGGCACGGCTCGGGGGGAAGAGATCGGGGCGGCTTGTGGCGTGGGGGAGGATGCTGAGGAAGATAAGGCTAAGATGGGTGAAACTGAAATGCATAGCCATGGTGAAGAAGATGAAAGAATACTACACAAGGTTGATGAAGGATATCATAGAGGCAGGAGCCTATGCTCACTCTTATCAACATAGGGTTCTCTTGGAGACTTCTTTTGCCATTCCAATTCTCGGTGTCTCGCTCTCTACTCATTCCAGTGTTCTTGCTGCCACTTCGTAA

Protein sequence

MGQPYEPEEGQPGAGLRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAATS
Homology
BLAST of Carg27132 vs. NCBI nr
Match: KAG7018218.1 (hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 2.7e-55
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MGQPYEPEEGQPGAGLRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKCI 60
           MGQPYEPEEGQPGAGLRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKCI
Sbjct: 1   MGQPYEPEEGQPGAGLRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKCI 60

Query: 61  AMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAATS 118
           AMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAATS
Sbjct: 61  AMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAATS 117

BLAST of Carg27132 vs. NCBI nr
Match: KAG6581768.1 (hypothetical protein SDJN03_21770, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 117/121 (96.69%), Postives = 117/121 (96.69%), Query Frame = 0

Query: 1   MGQPYEPEEGQPGAGL----RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK 60
           MGQPYEPEEGQPGAGL    RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK
Sbjct: 1   MGQPYEPEEGQPGAGLRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK 60

Query: 61  LKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAAT 118
           LKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAAT
Sbjct: 61  LKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAAT 120

BLAST of Carg27132 vs. NCBI nr
Match: XP_022956317.1 (uncharacterized protein LOC111458050 [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 8.1e-52
Identity = 115/125 (92.00%), Postives = 116/125 (92.80%), Query Frame = 0

Query: 1   MGQPYEPEEGQPGAGL--------RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60
           MGQPYEPEEGQPGAGL        RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL
Sbjct: 1   MGQPYEPEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60

Query: 61  RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSV 118
           RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYA SYQHR+LLETSFAIPILGVSLSTHSSV
Sbjct: 61  RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLSTHSSV 120

BLAST of Carg27132 vs. NCBI nr
Match: XP_038891072.1 (uncharacterized protein LOC120080455 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 9.9e-42
Identity = 98/124 (79.03%), Postives = 108/124 (87.10%), Query Frame = 0

Query: 1   MGQPYEPEEGQPGAGL----RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVK 60
           M Q YE  EGQP AGL    RRG++FRRRRMPVARLGGKRSGR+VAWGRMLRKIRLRWVK
Sbjct: 1   MAQSYEQGEGQPAAGLRWGMRRGIQFRRRRMPVARLGGKRSGRIVAWGRMLRKIRLRWVK 60

Query: 61  LKCIAMVKKMKEYYTRLMKDIIEAGAY---AHSYQHRVLLETSFAIPILGVSLSTHSSVL 118
           +KCIAMVKK+K+YYT LMKDI+E GAY   A SYQHR+L+ETSFAIPILGVSLSTHSS+L
Sbjct: 61  VKCIAMVKKIKKYYTSLMKDIMEGGAYGYAADSYQHRLLMETSFAIPILGVSLSTHSSIL 120

BLAST of Carg27132 vs. NCBI nr
Match: XP_022948735.1 (uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 uncharacterized protein LOC111787905 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = 0

Query: 1   MGQPYEPEEG-QPGAGL----RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWV 60
           M Q  E EEG Q GAGL    R+G++FRRRRM VARLGGKRSGRLVAWGR LRKIRLRWV
Sbjct: 1   MPQSSEQEEGQQAGAGLRWATRQGIQFRRRRMAVARLGGKRSGRLVAWGRRLRKIRLRWV 60

Query: 61  KLKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAA 118
           KLKCIAMVKK+K+Y   LMKD++EAGAY  SYQHR+LLETSFAIPILGVS STHS+  AA
Sbjct: 61  KLKCIAMVKKVKKYCASLMKDMMEAGAYGDSYQHRLLLETSFAIPILGVSFSTHSTHAAA 120

BLAST of Carg27132 vs. ExPASy TrEMBL
Match: A0A6J1GVZ8 (uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC111458050 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 3.9e-52
Identity = 115/125 (92.00%), Postives = 116/125 (92.80%), Query Frame = 0

Query: 1   MGQPYEPEEGQPGAGL--------RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60
           MGQPYEPEEGQPGAGL        RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL
Sbjct: 1   MGQPYEPEEGQPGAGLRRGTRRGTRRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRL 60

Query: 61  RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSV 118
           RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYA SYQHR+LLETSFAIPILGVSLSTHSSV
Sbjct: 61  RWVKLKCIAMVKKMKEYYTRLMKDIIEAGAYARSYQHRLLLETSFAIPILGVSLSTHSSV 120

BLAST of Carg27132 vs. ExPASy TrEMBL
Match: A0A6J1GAR0 (uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC111452314 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 91/122 (74.59%), Postives = 102/122 (83.61%), Query Frame = 0

Query: 1   MGQPYEPEEG-QPGAGL----RRGMRFRRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWV 60
           M Q  E EEG Q GAGL    R+G++FRRRRM VARLGGKRSGRLVAWGR LRKIRLRWV
Sbjct: 1   MPQSSEQEEGQQAGAGLRWATRQGIQFRRRRMAVARLGGKRSGRLVAWGRRLRKIRLRWV 60

Query: 61  KLKCIAMVKKMKEYYTRLMKDIIEAGAYAHSYQHRVLLETSFAIPILGVSLSTHSSVLAA 118
           KLKCIAMVKK+K+Y   LMKD++EAGAY  SYQHR+LLETSFAIPILGVS STHS+  AA
Sbjct: 61  KLKCIAMVKKVKKYCASLMKDMMEAGAYGDSYQHRLLLETSFAIPILGVSFSTHSTHAAA 120

BLAST of Carg27132 vs. ExPASy TrEMBL
Match: A0A5D3DCV1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45855G00010 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 79/104 (75.96%), Postives = 94/104 (90.38%), Query Frame = 0

Query: 17  RRGMRFRRRR-MPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKCIAMVKKMKEYYTRLMK 76
           R G++FRRRR M VARLGGKRSGR++AWGR++RKIRL+WVK+KCI MVKKMK+YY +LMK
Sbjct: 14  RHGIQFRRRRKMAVARLGGKRSGRIMAWGRIVRKIRLKWVKMKCIEMVKKMKKYYKKLMK 73

Query: 77  DIIEAGA--YAHSYQHRVLLETSFAIPILGVSLSTHSSVLAATS 118
           DI+EAGA  YA SYQHR+LLETSFAIPILGVSLSTHSS++ A +
Sbjct: 74  DIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIIHAAA 117

BLAST of Carg27132 vs. ExPASy TrEMBL
Match: A0A0A0LBW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 81/104 (77.88%), Postives = 93/104 (89.42%), Query Frame = 0

Query: 17  RRGMRF-RRRRMPVARLGGKRSGRLVAWGRMLRKIRLRWVKLKCIAMVKKMKEYYTRLMK 76
           R G++F RRRRM VARLGGKRSGR+V WGR++RKIRL+WVK+KCI MVKKMK+YY  LMK
Sbjct: 14  RCGIQFRRRRRMAVARLGGKRSGRIVGWGRIVRKIRLKWVKMKCIEMVKKMKKYYKELMK 73

Query: 77  DIIEAGA--YAHSYQHRVLLETSFAIPILGVSLSTHSSVLAATS 118
           DI+EAGA  YA SYQHR+LLETSFAIPILGVSLSTHSS+ AAT+
Sbjct: 74  DIMEAGAYGYADSYQHRLLLETSFAIPILGVSLSTHSSIHAATA 117

BLAST of Carg27132 vs. ExPASy TrEMBL
Match: A0A6J1D3L4 (uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016963 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.9e-24
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 0

Query: 1   MGQPYEPEEGQPG--AGLRRGMRF-RRRRMPVARLGGKRS----GRLVAWGRMLRKIRLR 60
           MG+ YE E G PG     RRG++F RRRRMPVARLGG  S    GRL   GRM+RKIR+R
Sbjct: 28  MGEGYETENG-PGLRCAARRGIQFRRRRRMPVARLGGPGSGSGPGRL---GRMVRKIRVR 87

Query: 61  WVKLKCIAMVKKMKEYYTRLMKDIIEAG---AYAHSYQHRVLLETSFAIPILGVSLSTH 110
           WVKL+C+AMVKKMK++Y +++KD+IEA    AY  SYQHRVLLETSFAIPIL  SLST+
Sbjct: 88  WVKLRCLAMVKKMKKWYRKVLKDVIEAQAAVAYPESYQHRVLLETSFAIPILPRSLSTY 142

BLAST of Carg27132 vs. TAIR 10
Match: AT1G54120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-12
Identity = 42/100 (42.00%), Postives = 66/100 (66.00%), Query Frame = 0

Query: 17  RRGMRFRRRRMPVARLGGKRSGRLVAWG-----RMLRKIRLRWVKLKCIAMVKKMKEYYT 76
           RR +  RRR+  V RLGGK S   V+ G     +M+R+++LRW+KL  + +VKK+K +Y 
Sbjct: 17  RRKIHIRRRKSQVVRLGGKNSA--VSRGGFSLKKMVRRMKLRWLKLHYVRVVKKIKVFYR 76

Query: 77  RLMKDIIEAGAYAHSYQHRVLLE-TSFAIPILGVSLSTHS 111
            L+K+ ++AGA   + Q R+ +E  +FA+P LG+S S+ S
Sbjct: 77  NLVKEFVDAGAELEAIQQRMAVEAAAFAVPGLGLSFSSFS 114

BLAST of Carg27132 vs. TAIR 10
Match: AT3G14060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54120.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 0

Query: 17  RRGMRFRRRRMPVARLGGKRSGRLVAWG--RMLRKIRLRWVKLKCIAMVKKMKEYYTRLM 76
           RR +  RRR+  V RLGGK S    ++   +++ ++RL+W++L  + +VKK+K YY  ++
Sbjct: 20  RRKIYLRRRKPQVVRLGGKNSTPRGSFSLKKVVTRMRLKWLRLYYVRLVKKIKAYYRTIV 79

Query: 77  KDIIEAGAYAHSYQHRVLLET-SFAIPILGVS 106
           K+  EAG  A + Q R+ +ET +FA P LG+S
Sbjct: 80  KEFEEAG--AATIQQRMTVETAAFAAPGLGLS 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7018218.12.7e-55100.00hypothetical protein SDJN02_20086, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581768.11.5e-5396.69hypothetical protein SDJN03_21770, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022956317.18.1e-5292.00uncharacterized protein LOC111458050 [Cucurbita moschata][more]
XP_038891072.19.9e-4279.03uncharacterized protein LOC120080455 [Benincasa hispida][more]
XP_022948735.11.4e-3574.59uncharacterized protein LOC111452314 [Cucurbita moschata] >XP_023523769.1 unchar... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GVZ83.9e-5292.00uncharacterized protein LOC111458050 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A6J1GAR06.7e-3674.59uncharacterized protein LOC111452314 OS=Cucurbita moschata OX=3662 GN=LOC1114523... [more]
A0A5D3DCV12.6e-3275.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LBW72.6e-3277.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G644780 PE=4 SV=1[more]
A0A6J1D3L45.9e-2464.71uncharacterized protein LOC111016963 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
AT1G54120.18.7e-1242.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G14060.11.0e-0740.22unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR34788:SF4F15I1.22coord: 17..112
NoneNo IPR availablePANTHERPTHR34788F15I1.22coord: 17..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27132-RACarg27132-RAmRNA