Carg27129 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27129
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein LAZY 4
Location	Carg_Chr14: 9227579 .. 9228424 (+)
RNA-Seq Expression	Carg27129
Synteny	Carg27129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTAAAGTTCAAACAAAATTGCATGTTCTTTTCTTTTTTTTTTCTTCTATTTTTTGCTAATTAGCCCTTCAATTTTGATCATTTTATTTTTGGTTTCAGTTCTTGAGTTGGATGCAAAGTAATAAACTCCATGGAAGAGTAAAATTTCAGAACAAATCATCAAATTCAAACCCTTCAAGTAATTGCACTAAACTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGTTATGAACTCGCCATTATTTTACATGTATGATCATGATCTTTCATGAACTAAATAATCAGTTGAGCAACCTGAAGAAACGAGCCCCTCTTTGCCTCTTGGCTTGCTAGCAATTGGAACTTTTGGCAACAATGTGTTAAGAACGAACAAGACCGATGTTGAAAACGTCGTCGTTGATGCTCGATCTCCAGGGAAAGAAATGGAAGACATTGAGCTGAGGGAGATTGATGATGAAATGAAAGAGAAGATTGGTTTAATCATTGGGGATGATGAGAAACATAATCCCAAATCTATTGTTAAGAGATCTGTTTCATTTCTTGTCAAGAAAGTATTTGTCTGTGGCGGAAGTGGTTTTACGCCGCCGCCGCCACCACAGAACTTCATGGATACGCCGCAAGACGCAACGATGAAGAAGGTACGTAAACAACTGGTATCAATGTATAATGTCTTAACGAGTATATTAGGTCGAGTTATAGTTGGTGATCGGTAATAATGTGCAGATATTGAGGATGATGCTTCACAAGAAAATTTACCCTAAGAGTTCTTCACAAACAGCTTCATTGAAGAGATTCATAAAGGAGAAAGAGAGGAGAGATAAGAGAAATGAAGAAGAAGAATGA

mRNA sequence

ATGAAGTTCTTGAGTTGGATGCAAAGTAATAAACTCCATGGAAGAGTAAAATTTCAGAACAAATCATCAAATTCAAACCCTTCAATTGAGCAACCTGAAGAAACGAGCCCCTCTTTGCCTCTTGGCTTGCTAGCAATTGGAACTTTTGGCAACAATGTGTTAAGAACGAACAAGACCGATGTTGAAAACGTCGTCGTTGATGCTCGATCTCCAGGGAAAGAAATGGAAGACATTGAGCTGAGGGAGATTGATGATGAAATGAAAGAGAAGATTGGTTTAATCATTGGGGATGATGAGAAACATAATCCCAAATCTATTGTTAAGAGATCTGTTTCATTTCTTGTCAAGAAAGTATTTGTCTGTGGCGGAAGTGGTTTTACGCCGCCGCCGCCACCACAGAACTTCATGGATACGCCGCAAGACGCAACGATGAAGAAGATATTGAGGATGATGCTTCACAAGAAAATTTACCCTAAGAGTTCTTCACAAACAGCTTCATTGAAGAGATTCATAAAGGAGAAAGAGAGGAGAGATAAGAGAAATGAAGAAGAAGAATGA

Coding sequence (CDS)

ATGAAGTTCTTGAGTTGGATGCAAAGTAATAAACTCCATGGAAGAGTAAAATTTCAGAACAAATCATCAAATTCAAACCCTTCAATTGAGCAACCTGAAGAAACGAGCCCCTCTTTGCCTCTTGGCTTGCTAGCAATTGGAACTTTTGGCAACAATGTGTTAAGAACGAACAAGACCGATGTTGAAAACGTCGTCGTTGATGCTCGATCTCCAGGGAAAGAAATGGAAGACATTGAGCTGAGGGAGATTGATGATGAAATGAAAGAGAAGATTGGTTTAATCATTGGGGATGATGAGAAACATAATCCCAAATCTATTGTTAAGAGATCTGTTTCATTTCTTGTCAAGAAAGTATTTGTCTGTGGCGGAAGTGGTTTTACGCCGCCGCCGCCACCACAGAACTTCATGGATACGCCGCAAGACGCAACGATGAAGAAGATATTGAGGATGATGCTTCACAAGAAAATTTACCCTAAGAGTTCTTCACAAACAGCTTCATTGAAGAGATTCATAAAGGAGAAAGAGAGGAGAGATAAGAGAAATGAAGAAGAAGAATGA

Protein sequence

MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTDVENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFVCGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKRNEEEE

Homology

[Close]

BLAST of Carg27129 vs. NCBI nr
Match: KAG7018221.1 (hypothetical protein SDJN02_20089, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-95
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD
Sbjct: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60

Query: 61  VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV 120
           VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV
Sbjct: 61  VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV 120

Query: 121 CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180
           CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR
Sbjct: 121 CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180

Query: 181 NEEEE 186
           NEEEE
Sbjct: 181 NEEEE 185

[Close]

BLAST of Carg27129 vs. NCBI nr
Match: XP_022955951.1 (uncharacterized protein LOC111457786 [Cucurbita moschata])

HSP 1 Score: 351.7 bits (901), Expect = 3.9e-93
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD
Sbjct: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60

Query: 61  VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV 120
           VENVVVDARSPGKEMED+ELREIDDEMKEKIGLIIGDDEKHNPKSIV+RSVSFL+KKVFV
Sbjct: 61  VENVVVDARSPGKEMEDVELREIDDEMKEKIGLIIGDDEKHNPKSIVRRSVSFLIKKVFV 120

Query: 121 CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180
           CGGSGF PPPPP NF+DTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR
Sbjct: 121 CGGSGFAPPPPPPNFIDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180

Query: 181 NEEEE 186
           NEEEE
Sbjct: 181 NEEEE 185

[Close]

BLAST of Carg27129 vs. NCBI nr
Match: XP_023527029.1 (uncharacterized protein LOC111790378 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.3 bits (874), Expect = 5.3e-90
Identity = 176/185 (95.14%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKFLSWMQSNKLHGRVKFQNKSSNSNPSIE+ EETSPSLPLGLL+IGTFGNNVLRTNKTD
Sbjct: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEEREETSPSLPLGLLSIGTFGNNVLRTNKTD 60

Query: 61  VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV 120
           VENVVVDARSPGKE EDIELREIDDEMKEKIGL+IGDDEKHNPKSIVKRSVSFLVKKVFV
Sbjct: 61  VENVVVDARSPGKETEDIELREIDDEMKEKIGLMIGDDEKHNPKSIVKRSVSFLVKKVFV 120

Query: 121 CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180
           CGG GF PP PP NFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR
Sbjct: 121 CGGGGFAPPQPPPNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180

Query: 181 NEEEE 186
           NEEEE
Sbjct: 181 NEEEE 185

[Close]

BLAST of Carg27129 vs. NCBI nr
Match: XP_022980726.1 (uncharacterized protein LOC111480009 [Cucurbita maxima])

HSP 1 Score: 337.4 bits (864), Expect = 7.7e-89
Identity = 175/185 (94.59%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKFLSWMQSNKLHG+VKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD
Sbjct: 1   MKFLSWMQSNKLHGKVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60

Query: 61  VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV 120
           VENVVVDARS GKE ED ELREIDDEMKEKIGL+IGDDEK+NPKSIV+RSVSFLVKKVFV
Sbjct: 61  VENVVVDARSLGKETEDFELREIDDEMKEKIGLMIGDDEKNNPKSIVRRSVSFLVKKVFV 120

Query: 121 CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180
           CGGSGF PPP P NFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR
Sbjct: 121 CGGSGFAPPPLPPNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180

Query: 181 NEEEE 186
           NEEEE
Sbjct: 181 NEEEE 185

[Close]

BLAST of Carg27129 vs. NCBI nr
Match: KAG6581771.1 (Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.3 bits (713), Expect = 2.5e-71
Identity = 143/174 (82.18%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 7   MQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTDVENVVV 66
           MQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTDVENVVV
Sbjct: 1   MQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTDVENVVV 60

Query: 67  DARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFVCGGSGF 126
           DARSPGKEMED+ELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFVCGGSGF
Sbjct: 61  DARSPGKEMEDVELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFVCGGSGF 120

Query: 127 TPPPPPQNFMDTPQDATMKKILRMMLHK-KIYPKSSSQTASLKRFIKEKERRDK 180
           TPPPPPQNFMDTPQDATMKK+ + ++    +  ++    ++ +R + E +  DK
Sbjct: 121 TPPPPPQNFMDTPQDATMKKVRKQLVSMYNVLTRNFVVESAFERIVAENQYCDK 174

[Close]

BLAST of Carg27129 vs. ExPASy Swiss-Prot
Match: A0A251PW43 (Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-16
Identity = 79/250 (31.60%), Postives = 124/250 (49.60%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSN-----SNPSIEQPEETSPSLPLGLLAIGTFGNNVLR 60
           MK   WMQ NKL+G  K  NK  N     ++P+ ++P E     P GLLAIGTFGNN L+
Sbjct: 1   MKLFGWMQ-NKLNG--KQGNKKPNTVPITTHPAKQEPREEFSDWPHGLLAIGTFGNNDLK 60

Query: 61  TNKTDVENVVVD---------------------------ARSPG--KEMEDIELREI--- 120
            N  + +++  D                            R P   KE+ D+ L      
Sbjct: 61  ENAAESQDIQEDPTSSEEILDNFTPEEVGKLHKELTKLLTRKPNIEKEIADLPLDRFLNC 120

Query: 121 -----------------------DDEMKEKIGLIIGDDEK----HNPKSIVKRSVSFLVK 180
                                  D+++++ I +I+G  ++     N K+I K+S+SFL+K
Sbjct: 121 PSSLEVDRRNSNALCSDSADDHKDEDIEKTISVILGRCKEICGDKNKKAIGKKSISFLLK 180

Query: 181 KVFVCGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIY-PKSSSQTASLKRFIKEKE 186
           K+FVC  SGF P P   +  DT Q++ M+K+LR+ML+KKI  P+ SS+ AS+K+++++++
Sbjct: 181 KMFVC-RSGFAPQP---SLRDTLQESRMEKLLRVMLNKKIINPQGSSRAASMKKYLEDRQ 240

[Close]

BLAST of Carg27129 vs. ExPASy Swiss-Prot
Match: A0A072TLV8 (Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS OS=Medicago truncatula OX=3880 GN=NGR PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-16
Identity = 77/246 (31.30%), Postives = 118/246 (47.97%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSI----EQPEETSPSLPLGLLAIGTFGNNVLRT 60
           MKF +WMQ NKL G  K +N+ SN++ S      +P E     P  LLAIGTFGNN   T
Sbjct: 1   MKFFNWMQ-NKLGG--KQENRKSNTSTSTTYAKPEPREEFSDWPHSLLAIGTFGNNNEIT 60

Query: 61  NKTDVENVVVDARSPGKEMEDIELREI--------------------------------- 120
              + +N   +  S  +E+ D    EI                                 
Sbjct: 61  QNIENQNTQQEDPSSSEEVPDFTPEEIGKLQKELTRLLRRKPNVEKEISELPLDRFLNCP 120

Query: 121 ---------------------DDEMKEKIGLIIGDDE----KHNPKSIVKRSVSFLVKKV 180
                                D+++++ + +I+   +    + + KSI K+S+SFL+KK+
Sbjct: 121 SSLEVDRRISNALCSESGGDKDEDIEKTLSVILDKCKDICAEKSKKSIGKKSISFLLKKM 180

Query: 181 FVCGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRD 185
           FVC  SGF P P   +  DT Q++ M+K+LR MLHKK+Y +++S+   LK+ ++ K+   
Sbjct: 181 FVC-RSGFAPTP---SLRDTLQESRMEKLLRTMLHKKLYTQNNSRAPVLKKCLENKKSIK 239

[Close]

BLAST of Carg27129 vs. ExPASy Swiss-Prot
Match: Q5XVG3 (Protein LAZY 4 OS=Arabidopsis thaliana OX=3702 GN=LAZY4 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-15
Identity = 78/268 (29.10%), Postives = 117/268 (43.66%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKF  WMQ NKLHG+ +  ++ S S+ S   P E     P GLLAIGTFGN        D
Sbjct: 1   MKFFGWMQ-NKLHGKQEITHRPSISSASSHHPREEFNDWPHGLLAIGTFGNKKQTPQTLD 60

Query: 61  --------VENVVVDARSP----------------------------------------- 120
                   V N+ V+ R                                           
Sbjct: 61  QEVIQEETVSNLHVEGRQAQDTDQELSSSDDLEEDFTPEEVGKLQKELTKLLTRRSKKRK 120

Query: 121 ---GKEMEDIEL---------------------REIDDEMKEKIGLIIG----------D 180
               +E+ ++ L                      E +++++  I +I+G          +
Sbjct: 121 SDVNRELANLPLDRFLNCPSSLEVDRRISNALCDEKEEDIERTISVILGRCKAISTESKN 180

Query: 181 DEKHNPKSIVKRSVSFLVKKVFVCGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIY 186
             K N + + K SVS L+KK+FVC   GF+P P P    DT Q+  M+K+LRMMLHKK+ 
Sbjct: 181 KTKKNKRDLSKTSVSHLLKKMFVC-TEGFSPVPRP-ILRDTFQETRMEKLLRMMLHKKVN 240

[Close]

BLAST of Carg27129 vs. ExPASy Swiss-Prot
Match: Q58G53 (Protein LAZY 2 OS=Arabidopsis thaliana OX=3702 GN=LAZY2 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 63  NVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGD------DEKHNPK--SIVKRSVSFL 122
           + VVD+    KE          ++M+  I +I+G       + K+N K   I K SVS+L
Sbjct: 150 SAVVDSSEENKE----------EDMERTINVILGRCKEISIESKNNKKKRDISKNSVSYL 209

Query: 123 VKKVFVCGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASL--KRFIK 182
            KK+FVC     T P P  +  DT Q++ M+K+L+MMLHKKI  ++SS+  SL  KR+++
Sbjct: 210 FKKIFVCADGISTAPSP--SLRDTLQESRMEKLLKMMLHKKINAQASSKPTSLTTKRYLQ 269

Query: 183 EKERRDKRNEEEE 186
           +K++   ++EEEE
Sbjct: 270 DKKQLSLKSEEEE 270

[Close]

BLAST of Carg27129 vs. ExPASy Swiss-Prot
Match: Q1G3U5 (Protein LAZY 3 OS=Arabidopsis thaliana OX=3702 GN=LAZY3 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.2e-09
Identity = 57/181 (31.49%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLG---LLAIGTFGNNVLRTN 60
           MK  SW+Q  KL G+ +     S+  PS     +    LP      LAIGT GNN+    
Sbjct: 1   MKIFSWVQ-RKLSGKKRVPTSDSSQEPSSPPLSKEVQGLPQDEETFLAIGTLGNNIF--- 60

Query: 61  KTDVENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKK 120
                        P +E E+ E     D       + IG           K+S+SFL+KK
Sbjct: 61  -------------PKQEEEEEETDSSKDITPVNTDVTIGK----------KKSLSFLLKK 120

Query: 121 VFVCGGSGFTPPPPPQNFM--DTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKE 177
           +FVC  SGF  PPP  +    D+  +  M+K+LR +L+KKI+P+ S+  A  K++++   
Sbjct: 121 MFVC-TSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQRSNSIA--KKYLESNH 151

[Close]

BLAST of Carg27129 vs. ExPASy TrEMBL
Match: A0A6J1GV88 (uncharacterized protein LOC111457786 OS=Cucurbita moschata OX=3662 GN=LOC111457786 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.9e-93
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD
Sbjct: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60

Query: 61  VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV 120
           VENVVVDARSPGKEMED+ELREIDDEMKEKIGLIIGDDEKHNPKSIV+RSVSFL+KKVFV
Sbjct: 61  VENVVVDARSPGKEMEDVELREIDDEMKEKIGLIIGDDEKHNPKSIVRRSVSFLIKKVFV 120

Query: 121 CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180
           CGGSGF PPPPP NF+DTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR
Sbjct: 121 CGGSGFAPPPPPPNFIDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180

Query: 181 NEEEE 186
           NEEEE
Sbjct: 181 NEEEE 185

[Close]

BLAST of Carg27129 vs. ExPASy TrEMBL
Match: A0A6J1IUE0 (uncharacterized protein LOC111480009 OS=Cucurbita maxima OX=3661 GN=LOC111480009 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.7e-89
Identity = 175/185 (94.59%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKFLSWMQSNKLHG+VKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD
Sbjct: 1   MKFLSWMQSNKLHGKVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60

Query: 61  VENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKKVFV 120
           VENVVVDARS GKE ED ELREIDDEMKEKIGL+IGDDEK+NPKSIV+RSVSFLVKKVFV
Sbjct: 61  VENVVVDARSLGKETEDFELREIDDEMKEKIGLMIGDDEKNNPKSIVRRSVSFLVKKVFV 120

Query: 121 CGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180
           CGGSGF PPP P NFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR
Sbjct: 121 CGGSGFAPPPLPPNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKR 180

Query: 181 NEEEE 186
           NEEEE
Sbjct: 181 NEEEE 185

[Close]

BLAST of Carg27129 vs. ExPASy TrEMBL
Match: A0A1S3CCN5 (uncharacterized protein LOC103499172 OS=Cucumis melo OX=3656 GN=LOC103499172 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 2.2e-49
Identity = 136/233 (58.37%), Postives = 160/233 (68.67%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSS--NSNPS-IEQP-EETSPSLPLGLLAIGTFGNNV--L 60
           MK LSWMQS KL G+VKFQNK S  +SNPS IEQP EE+S SLPLGLLAIGTFGNN   +
Sbjct: 1   MKLLSWMQS-KLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNTNDV 60

Query: 61  RTNKTDVENVVVDARSPGKEMED------IELREIDDEM--------------------- 120
           +  KTDVEN V+DA+S   E +D       ++ E+++E+                     
Sbjct: 61  KVLKTDVENAVIDAKSTSNETDDDNDSSLKDVPELEEELTKLWQQNSQFREEESDDFDDD 120

Query: 121 -------KEKIGLII----GDDEKHN--PKSIVKRSVSFLVKKVFVCGGSGFT--PPPPP 180
                  K+ IGL++    GD EK+N  P SIVKRSV+FLVKK+F+C GSGF   PP PP
Sbjct: 121 QTEEQVVKKNIGLVVREWQGDVEKNNDPPISIVKRSVTFLVKKIFIC-GSGFAPLPPSPP 180

Query: 181 QNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKERRDKRNEEEE 186
            NFMD PQDATMKKILRMML KKIYPK+SSQ ASLKRF+KEKERRDKRNE+EE
Sbjct: 181 PNFMDRPQDATMKKILRMMLEKKIYPKNSSQMASLKRFLKEKERRDKRNEDEE 231

[Close]

BLAST of Carg27129 vs. ExPASy TrEMBL
Match: A0A5A7UIH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00100 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 102/195 (52.31%), Postives = 124/195 (63.59%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSS--NSNPS-IEQP-EETSPSLPLGLLAIGTFGNNV--L 60
           MK LSWMQS KL G+VKFQNK S  +SNPS IEQP EE+S SLPLGLLAIGTFGNN   +
Sbjct: 1   MKLLSWMQS-KLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNTNDV 60

Query: 61  RTNKTDVENVVVDARSPGKEMED------IELREIDDEM--------------------- 120
           +  KTDVEN V+DA+S   E +D       ++ E+++E+                     
Sbjct: 61  KVLKTDVENAVIDAKSTSNETDDDNDSSLKDVPELEEELTKLWQQNSQFREEESDDFDDD 120

Query: 121 -------KEKIGLII----GDDEKHN--PKSIVKRSVSFLVKKVFVCGGSGFT--PPPPP 148
                  K+ IGL++    GD EK+N  P SIVKRSV+FLVKK+F+C GSGF   PP PP
Sbjct: 121 QTEEQVVKKNIGLVVREWQGDVEKNNDPPISIVKRSVTFLVKKIFIC-GSGFAPLPPSPP 180

[Close]

BLAST of Carg27129 vs. ExPASy TrEMBL
Match: A0A0A0L9D5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645860 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23
Identity = 80/168 (47.62%), Postives = 102/168 (60.71%), Query Frame = 0


Query: 25  SNPSIEQP-EETSPSLPLGLLAIGTFGNNV--LRTNKTDVENVVVDARSPGKEMED---- 84
           + P+IEQP EE+S SLPLGLLAIGTFGNN+  L+  KTD EN ++DA+S   E +D    
Sbjct: 65  NKPAIEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDDENAIIDAKSTLNETDDDNDG 124

Query: 85  ------------------------IELREIDDE------MKEKIGLII----GDDEKHN- 144
                                    E  + DD+      +K+ +GL++    GD EK+N 
Sbjct: 125 SLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIVKKNVGLVVREWEGDVEKNND 184

Query: 145 PK-SIVKRSVSFLVKKVFVCGGSGFT--PPPPPQNFMDTPQDATMKKI 148
           P+ SIVKRSVSFL+KK+F+C GSGF   PP PP NFMD PQDATMKK+
Sbjct: 185 PRISIVKRSVSFLIKKIFIC-GSGFAPLPPSPPPNFMDRPQDATMKKV 231

[Close]

BLAST of Carg27129 vs. TAIR 10
Match: AT1G72490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-16
Identity = 78/268 (29.10%), Postives = 117/268 (43.66%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLGLLAIGTFGNNVLRTNKTD 60
           MKF  WMQ NKLHG+ +  ++ S S+ S   P E     P GLLAIGTFGN        D
Sbjct: 1   MKFFGWMQ-NKLHGKQEITHRPSISSASSHHPREEFNDWPHGLLAIGTFGNKKQTPQTLD 60

Query: 61  --------VENVVVDARSP----------------------------------------- 120
                   V N+ V+ R                                           
Sbjct: 61  QEVIQEETVSNLHVEGRQAQDTDQELSSSDDLEEDFTPEEVGKLQKELTKLLTRRSKKRK 120

Query: 121 ---GKEMEDIEL---------------------REIDDEMKEKIGLIIG----------D 180
               +E+ ++ L                      E +++++  I +I+G          +
Sbjct: 121 SDVNRELANLPLDRFLNCPSSLEVDRRISNALCDEKEEDIERTISVILGRCKAISTESKN 180

Query: 181 DEKHNPKSIVKRSVSFLVKKVFVCGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIY 186
             K N + + K SVS L+KK+FVC   GF+P P P    DT Q+  M+K+LRMMLHKK+ 
Sbjct: 181 KTKKNKRDLSKTSVSHLLKKMFVC-TEGFSPVPRP-ILRDTFQETRMEKLLRMMLHKKVN 240

[Close]

BLAST of Carg27129 vs. TAIR 10
Match: AT1G17400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 63  NVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGD------DEKHNPK--SIVKRSVSFL 122
           + VVD+    KE          ++M+  I +I+G       + K+N K   I K SVS+L
Sbjct: 150 SAVVDSSEENKE----------EDMERTINVILGRCKEISIESKNNKKKRDISKNSVSYL 209

Query: 123 VKKVFVCGGSGFTPPPPPQNFMDTPQDATMKKILRMMLHKKIYPKSSSQTASL--KRFIK 182
            KK+FVC     T P P  +  DT Q++ M+K+L+MMLHKKI  ++SS+  SL  KR+++
Sbjct: 210 FKKIFVCADGISTAPSP--SLRDTLQESRMEKLLKMMLHKKINAQASSKPTSLTTKRYLQ 269

Query: 183 EKERRDKRNEEEE 186
           +K++   ++EEEE
Sbjct: 270 DKKQLSLKSEEEE 270

[Close]

BLAST of Carg27129 vs. TAIR 10
Match: AT1G19115.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-10
Identity = 57/181 (31.49%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLG---LLAIGTFGNNVLRTN 60
           MK  SW+Q  KL G+ +     S+  PS     +    LP      LAIGT GNN+    
Sbjct: 1   MKIFSWVQ-RKLSGKKRVPTSDSSQEPSSPPLSKEVQGLPQDEETFLAIGTLGNNIF--- 60

Query: 61  KTDVENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKK 120
                        P +E E+ E     D       + IG           K+S+SFL+KK
Sbjct: 61  -------------PKQEEEEEETDSSKDITPVNTDVTIGK----------KKSLSFLLKK 120

Query: 121 VFVCGGSGFTPPPPPQNFM--DTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKE 177
           +FVC  SGF  PPP  +    D+  +  M+K+LR +L+KKI+P+ S+  A  K++++   
Sbjct: 121 MFVC-TSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQRSNSIA--KKYLESNH 151

[Close]

BLAST of Carg27129 vs. TAIR 10
Match: AT1G19115.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-10
Identity = 57/181 (31.49%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLG---LLAIGTFGNNVLRTN 60
           MK  SW+Q  KL G+ +     S+  PS     +    LP      LAIGT GNN+    
Sbjct: 1   MKIFSWVQ-RKLSGKKRVPTSDSSQEPSSPPLSKEVQGLPQDEETFLAIGTLGNNIF--- 60

Query: 61  KTDVENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKK 120
                        P +E E+ E     D       + IG           K+S+SFL+KK
Sbjct: 61  -------------PKQEEEEEETDSSKDITPVNTDVTIGK----------KKSLSFLLKK 120

Query: 121 VFVCGGSGFTPPPPPQNFM--DTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKE 177
           +FVC  SGF  PPP  +    D+  +  M+K+LR +L+KKI+P+ S+  A  K++++   
Sbjct: 121 MFVC-TSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQRSNSIA--KKYLESNH 151

[Close]

BLAST of Carg27129 vs. TAIR 10
Match: AT1G19115.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 5.8e-10
Identity = 57/181 (31.49%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 1   MKFLSWMQSNKLHGRVKFQNKSSNSNPSIEQPEETSPSLPLG---LLAIGTFGNNVLRTN 60
           MK  SW+Q  KL G+ +     S+  PS     +    LP      LAIGT GNN+    
Sbjct: 1   MKIFSWVQ-RKLSGKKRVPTSDSSQEPSSPPLSKEVQGLPQDEETFLAIGTLGNNIF--- 60

Query: 61  KTDVENVVVDARSPGKEMEDIELREIDDEMKEKIGLIIGDDEKHNPKSIVKRSVSFLVKK 120
                        P +E E+ E     D       + IG           K+S+SFL+KK
Sbjct: 61  -------------PKQEEEEEETDSSKDITPVNTDVTIGK----------KKSLSFLLKK 120

Query: 121 VFVCGGSGFTPPPPPQNFM--DTPQDATMKKILRMMLHKKIYPKSSSQTASLKRFIKEKE 177
           +FVC  SGF  PPP  +    D+  +  M+K+LR +L+KKI+P+ S+  A  K++++   
Sbjct: 121 MFVC-TSGFKTPPPLLDLSRGDSLHNTRMEKMLRTILNKKIHPQRSNSIA--KKYLESNH 151

The following BLAST results are available for this feature:

BLAST of Carg27129 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018221.1	1.9e-95	100.00	hypothetical protein SDJN02_20089, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022955951.1	3.9e-93	96.76	uncharacterized protein LOC111457786 [Cucurbita moschata]	[more]
XP_023527029.1	5.3e-90	95.14	uncharacterized protein LOC111790378 [Cucurbita pepo subsp. pepo]	[more]
XP_022980726.1	7.7e-89	94.59	uncharacterized protein LOC111480009 [Cucurbita maxima]	[more]
KAG6581771.1	2.5e-71	82.18	Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg27129 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A251PW43	3.1e-16	31.60	Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1	[more]
A0A072TLV8	3.1e-16	31.30	Protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS OS=Medicago truncatula OX=3880 GN...	[more]
Q5XVG3	4.5e-15	29.10	Protein LAZY 4 OS=Arabidopsis thaliana OX=3702 GN=LAZY4 PE=1 SV=1	[more]
Q58G53	3.3e-10	37.59	Protein LAZY 2 OS=Arabidopsis thaliana OX=3702 GN=LAZY2 PE=2 SV=1	[more]
Q1G3U5	8.2e-09	31.49	Protein LAZY 3 OS=Arabidopsis thaliana OX=3702 GN=LAZY3 PE=2 SV=1	[more]

BLAST of Carg27129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GV88	1.9e-93	96.76	uncharacterized protein LOC111457786 OS=Cucurbita moschata OX=3662 GN=LOC1114577...	[more]
A0A6J1IUE0	3.7e-89	94.59	uncharacterized protein LOC111480009 OS=Cucurbita maxima OX=3661 GN=LOC111480009...	[more]
A0A1S3CCN5	2.2e-49	58.37	uncharacterized protein LOC103499172 OS=Cucumis melo OX=3656 GN=LOC103499172 PE=...	[more]
A0A5A7UIH7	2.4e-32	52.31	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L9D5	2.7e-23	47.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645860 PE=3 SV=1	[more]

BLAST of Carg27129 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72490.1	3.2e-16	29.10	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G17400.1	2.4e-11	37.59	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G19115.1	5.8e-10	31.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G19115.2	5.8e-10	31.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G19115.3	5.8e-10	31.49	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35
None	No IPR available	PANTHER	PTHR34045:SF3	OS03G0406300 PROTEIN	coord: 85..185
None	No IPR available	PANTHER	PTHR34045:SF3	OS03G0406300 PROTEIN	coord: 3..69
IPR044683	LAZY family	PANTHER	PTHR34045	OS03G0406300 PROTEIN	coord: 3..69 coord: 85..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27129-RA	Carg27129-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0040008	regulation of growth