Carg27127 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg27127
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein TIFY 10b-like
LocationCarg_Chr14: 9243073 .. 9243560 (+)
RNA-Seq ExpressionCarg27127
SyntenyCarg27127
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAATTTGAACACACAAGAGCCCTTCAGATCTGAAACAACTTACAATTCCACCATGTCTAACCCGTCGGACAGCGCCGCCGCCGCCTGCCGGAGGTCCGGTCGGGCACCGGAGAAGTCCAGTTTTGCTCAGACTTGTAATCTGCTGAGTCAGTACTTGAAGGAGAAGAGAAGCCTTGGAATTACCCCTAGAATTGAACCAAAAGGTACTTTAGCTATCTGAGTTTTGAAATTCTTTAGCTAATTCAAACCAATTTGCAGCCGATCGGTGCTAACTTTGTTGTTCTTTTGATTGCTCTGTTCAGATGAGTTTCCGGACGGCTCGGCCGCCGGCGATTATGAACCTGTTGACAAACATGGAAAACCCAGAAGAGAAGAGGCGGTGGGGCTTTTTCTGCCGCCGTCTGCCACGCAGATGACCATTTTTACTGCGGAAAAGTGCTGGTGTTCAAATGATCTTCCTCGGAGAAGGCGGAGGGAGATATGA

mRNA sequence

AAAGAAATTTGAACACACAAGAGCCCTTCAGATCTGAAACAACTTACAATTCCACCATGTCTAACCCGTCGGACAGCGCCGCCGCCGCCTGCCGGAGGTCCGGTCGGGCACCGGAGAAGTCCAGTTTTGCTCAGACTTGTAATCTGCTGAGTCAGTACTTGAAGGAGAAGAGAAGCCTTGGAATTACCCCTAGAATTGAACCAAAAGATGAGTTTCCGGACGGCTCGGCCGCCGGCGATTATGAACCTGTTGACAAACATGGAAAACCCAGAAGAGAAGAGGCGGTGGGGCTTTTTCTGCCGCCGTCTGCCACGCAGATGACCATTTTTACTGCGGAAAAGTGCTGGTGTTCAAATGATCTTCCTCGGAGAAGGCGGAGGGAGATATGA

Coding sequence (CDS)

ATGTCTAACCCGTCGGACAGCGCCGCCGCCGCCTGCCGGAGGTCCGGTCGGGCACCGGAGAAGTCCAGTTTTGCTCAGACTTGTAATCTGCTGAGTCAGTACTTGAAGGAGAAGAGAAGCCTTGGAATTACCCCTAGAATTGAACCAAAAGATGAGTTTCCGGACGGCTCGGCCGCCGGCGATTATGAACCTGTTGACAAACATGGAAAACCCAGAAGAGAAGAGGCGGTGGGGCTTTTTCTGCCGCCGTCTGCCACGCAGATGACCATTTTTACTGCGGAAAAGTGCTGGTGTTCAAATGATCTTCCTCGGAGAAGGCGGAGGGAGATATGA

Protein sequence

MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAGDYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI
Homology
BLAST of Carg27127 vs. NCBI nr
Match: KAG7018223.1 (hypothetical protein SDJN02_20091 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG
Sbjct: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60

Query: 61  DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI 111
           DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI
Sbjct: 61  DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI 110

BLAST of Carg27127 vs. NCBI nr
Match: XP_022955789.1 (protein TIFY 10b-like [Cucurbita moschata])

HSP 1 Score: 148.7 bits (374), Expect = 3.0e-32
Identity = 79/110 (71.82%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFP      
Sbjct: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPTARPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  +EAVGLFLPPSATQMTIF   K    NDLP  +  EI
Sbjct: 61  IMNLLTNMENPEEKEAVGLFLPPSATQMTIFYCGKVLVFNDLPSEKAEEI 110

BLAST of Carg27127 vs. NCBI nr
Match: XP_023527028.1 (protein TIFY 10b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31
Identity = 78/110 (70.91%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFP      
Sbjct: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPTARPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  +EAVGLF PPSATQMTIF   K    NDLP  +  EI
Sbjct: 61  IMNLLTNMENPGEKEAVGLFPPPSATQMTIFYCGKVLVFNDLPSEKAEEI 110

BLAST of Carg27127 vs. NCBI nr
Match: KAG6581773.1 (Protein TIFY 10b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 6.3e-30
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MSNPSDSAAAACRR+GRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFP      
Sbjct: 1   MSNPSDSAAAACRRAGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPTAPPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +        +EAVGLF PPSATQMTIF   K    NDLP  +  EI
Sbjct: 61  IMNLLTNMENQGEKEAVGLFPPPSATQMTIFYCGKVLVFNDLPSEKAEEI 110

BLAST of Carg27127 vs. NCBI nr
Match: KAG7018227.1 (Protein TIFY 10b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.6 bits (353), Expect = 8.2e-30
Identity = 77/110 (70.00%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MSNPSDS AAACRR+GRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFP      
Sbjct: 1   MSNPSDS-AAACRRAGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPTAPPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  +EAVGLFLPPSATQMTIF   K    NDLP  +  EI
Sbjct: 61  IMNLLTNMENPGEKEAVGLFLPPSATQMTIFYCGKVLVFNDLPSEKAEEI 109

BLAST of Carg27127 vs. ExPASy TrEMBL
Match: A0A6J1GXA0 (protein TIFY 10b-like OS=Cucurbita moschata OX=3662 GN=LOC111457672 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 79/110 (71.82%), Postives = 82/110 (74.55%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFP      
Sbjct: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPTARPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLFLPPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  +EAVGLFLPPSATQMTIF   K    NDLP  +  EI
Sbjct: 61  IMNLLTNMENPEEKEAVGLFLPPSATQMTIFYCGKVLVFNDLPSEKAEEI 110

BLAST of Carg27127 vs. ExPASy TrEMBL
Match: A0A6J1IS28 (protein TIFY 10b-like OS=Cucurbita maxima OX=3661 GN=LOC111480006 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 74/114 (64.91%), Postives = 78/114 (68.42%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           M NPSDS  AACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFP      
Sbjct: 1   MYNPSDS--AACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPTARPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLF----LPPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  +EAVG+F     PPSATQMTIF   K    NDLP  +  EI
Sbjct: 61  IMNLLTNMENPGEKEAVGIFPPPLEPPSATQMTIFYCGKVLVFNDLPSEKAEEI 112

BLAST of Carg27127 vs. ExPASy TrEMBL
Match: A0A6J1GBZ2 (protein TIFY 10b-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452772 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.1e-23
Identity = 72/114 (63.16%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MS PSD+AAA  RR GRAPEKSSFAQTCNLLSQYLKEKR LGI+PRIEPKDEFP      
Sbjct: 1   MSTPSDNAAA--RRLGRAPEKSSFAQTCNLLSQYLKEKRGLGISPRIEPKDEFPTPRPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLFL----PPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  E+AVGLFL    PPSA QMTIF   K    NDLP  R  EI
Sbjct: 61  IMNLLTNMVNP-EEKAVGLFLPSAEPPSAMQMTIFYEGKVLVFNDLPSERAEEI 111

BLAST of Carg27127 vs. ExPASy TrEMBL
Match: A0A6J1GBZ3 (protein TIFY 10b-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452772 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.1e-23
Identity = 72/114 (63.16%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MS PSD+AAA  RR GRAPEKSSFAQTCNLLSQYLKEKR LGI+PRIEPKDEFP      
Sbjct: 1   MSTPSDNAAA--RRLGRAPEKSSFAQTCNLLSQYLKEKRGLGISPRIEPKDEFPTPRPPA 60

Query: 61  DYEPVDKHGKPRREEAVGLFL----PPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  E+AVGLFL    PPSA QMTIF   K    NDLP  R  EI
Sbjct: 61  IMNLLTNMVNP-EEKAVGLFLPSAEPPSAMQMTIFYEGKVLVFNDLPSERAEEI 111

BLAST of Carg27127 vs. ExPASy TrEMBL
Match: A0A6J1K9M8 (protein TIFY 10b-like OS=Cucurbita maxima OX=3661 GN=LOC111492925 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 71/114 (62.28%), Postives = 76/114 (66.67%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLGITPRIEPKDEFPDGSAAG 60
           MS PSD+AAA  R+  RAPEKSSFAQTCNLLSQYLKEKR LGI+PRIEPKDEFP      
Sbjct: 63  MSTPSDNAAA--RKPDRAPEKSSFAQTCNLLSQYLKEKRGLGISPRIEPKDEFPTPRPPA 122

Query: 61  DYEPVDKHGKPRREEAVGLFL----PPSATQMTIFTAEKCWCSNDLPRRRRREI 111
               +     P  E+AVGLFL    PPSATQMTIF   K    NDLP  R  EI
Sbjct: 123 IMNLLTNMENP-EEKAVGLFLPSAEPPSATQMTIFYDGKVLVFNDLPSERAEEI 173

BLAST of Carg27127 vs. TAIR 10
Match: AT1G17380.1 (jasmonate-zim-domain protein 5 )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 43/130 (33.08%), Postives = 62/130 (47.69%), Query Frame = 0

Query: 1   MSNPSDSAAAACRRSGRAPEKSSFAQTCNLLSQYLKEKRSLG-ITPRIEPKDEFPDGSAA 60
           MS+ +++A A      +APEKS F + C+LLS+YLKEK S G I   +  K   PD S A
Sbjct: 1   MSSSNENAKA------QAPEKSDFTRRCSLLSRYLKEKGSFGNIDLGLYRK---PDSSLA 60

Query: 61  --GDYEPVDK--------HGKPRREEAVGLFL---------PPSATQMTIFTAEKCWCSN 111
             G ++P  K        H K     + G  +          P ++Q+TIF   K    N
Sbjct: 61  LPGKFDPPGKQNAMHKAGHSKGEPSTSSGGKVKDVADLSESQPGSSQLTIFFGGKVLVYN 120

BLAST of Carg27127 vs. TAIR 10
Match: AT1G72450.1 (jasmonate-zim-domain protein 6 )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 19/28 (67.86%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 15 SGRAPEKSSFAQTCNLLSQYLKEKRSLG 43
          +G+APEKS+F+Q C+LLS+YLKEK S G
Sbjct: 3  TGQAPEKSNFSQRCSLLSRYLKEKGSFG 30

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7018223.11.9e-55100.00hypothetical protein SDJN02_20091 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022955789.13.0e-3271.82protein TIFY 10b-like [Cucurbita moschata][more]
XP_023527028.13.3e-3170.91protein TIFY 10b-like [Cucurbita pepo subsp. pepo][more]
KAG6581773.16.3e-3069.09Protein TIFY 10b, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7018227.18.2e-3070.00Protein TIFY 10b [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GXA01.5e-3271.82protein TIFY 10b-like OS=Cucurbita moschata OX=3662 GN=LOC111457672 PE=3 SV=1[more]
A0A6J1IS281.6e-2664.91protein TIFY 10b-like OS=Cucurbita maxima OX=3661 GN=LOC111480006 PE=3 SV=1[more]
A0A6J1GBZ26.1e-2363.16protein TIFY 10b-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452772 P... [more]
A0A6J1GBZ36.1e-2363.16protein TIFY 10b-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452772 P... [more]
A0A6J1K9M81.4e-2262.28protein TIFY 10b-like OS=Cucurbita maxima OX=3661 GN=LOC111492925 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G17380.11.3e-0433.08jasmonate-zim-domain protein 5 [more]
AT1G72450.12.2e-0467.86jasmonate-zim-domain protein 6 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR33077:SF112PROTEIN TIFY 10A-LIKEcoord: 16..52
IPR040390TIFY/JAZ familyPANTHERPTHR33077PROTEIN TIFY 4A-RELATED-RELATEDcoord: 16..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg27127-RACarg27127-RAmRNA