Carg27089 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27089
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S25
Location	Carg_Chr10: 8090625 .. 8092986 (+)
RNA-Seq Expression	Carg27089
Synteny	Carg27089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTGAAGGCTAGCTATAAACCATCGCTAAATTCATTCCGCGTGTCTCGTCTCTTTACTTCTGCAGCGGCATCTTCTTCAGCACATCCAACTCCGGCGGTGCAACTTCGATACGATGGTAAAATTCTGGTCTACTTTTTTTATTTTTGGTATCTGGATTTACTGTTTGGTGTTTTATTCTTTTTGTTTTGATTAATCTAGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGGTCACATTCTTCAAACTATATCTTTTACTTTATTTAAATTCATAGCTGTATCATATAGTAGGTGAACTGTATTTTGAATCATGCCGGTGTTATTGTTAGGAATGAGGTTATTTCAACTCTTTATTGAAGTATTTGGTTCTCCGACTATTTCTCTGTTACAAGTGGTGTAGATCTTGTTTTTTTATGTTTGGATATTGCTGAGGTTATTTTTGGGAATGAGAATGTTTCTCTTCCTTGTCTCAAATTGTTAGATTTCGAAGTTTAATTGCATGTCTAATCCCTTCTCAAGGTGGCCTCGAGGCCTAAATCTCAAACGCTGCATCTATGATACTATGATGTCTTATGTGGAAAAGGCTTCTATCACTTTTACCAAATTTTTGTTTTGTATTAAACTTTATGTGGACAATCATGATACTTCGAAGCAGCTAAAGATGAGGAAAATTAGTACTCTGGAGCTCATGAACTTGTAATTTTGGTTTTCGGTTCGTTTTTGGAAACCAAAATCGCGATTGTGATTTCAGGGTAGAATATCTCGTGCAATTTAGATGTGAACTGTAAAATTTTGATTCTAAATGCTAAAATTGTGCAGTTTTCTCATTTTTAATCCTGTTTGTTCATACAACAGAAGTGGAGCAAGGGAAAGCAAAAAGAGAAGGTCAACAACATGGTTTTGTTCGATCAAGGAACTTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGGTACGTTTTTAATCCTCTTCTCTTCCATAATATAGAATTTTTTTTAATGATTTTTCTTGCTTGCATACTCCTTCACTATGATTTAATTCTAGTTATTTGTCACTTATGACCTTGATACGATCAATATCTATCCTTTTTCATTCGAACCTATGTTTAAAACATTCAATCCACTCATTCTAAGATGCACACTTTAAAAACATTGTGCTAGCACTTGTTCGACACAGATCAAACACTTGTTAGCCCAATGGATATGTGTGTTACAACACTGGTTTGACCAAATCATTACGCGTCCGACATTTATTAGATAATTGAACATTTGTTAAGTATATTACATAGACACATAATAATATATAACCAATAATAAATTTGTAACATATAAATGAACAAACCTATCAACTTCGAATTTTCTTCTGACATGAATCTGATATATTTTTAGAAAGTGTGTGTTTTATTAAACATTTCATAGCCATGTCCTATATTTTCCGAAAATGGTGACATTGTGTACATGTCGCATTTGTGTCTCGGTCTCATATCCGTATCTCTTAGCATTCAATAAACATAGGAAACCCCATGATTTCTTTTTACGAGTTCGCACTCTTGAAATAAAAAAGAACTTCAGAGTTCTTCTGTATTCGTATCGTGTTGTTTTTGAACCTGTTGGCTGCCGCCTAACACGAGTTCAACTTTCAGATCAATGGATCCCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAAAATTCCTTCAATCTTAAGAGTTGCCTGCCATGAATTAGCGTCGTTACTCTTAGTTTTTGGTTTTTTGGTTGAATGTCAACTTTAGATGGATGCTATAATTTTGCAATTTTTGTCTGATGATATCTTCCCTGTTAATCACTACTTTTAATATTTATCAAGTTTCCAACCATTCGGGATGTTTATTGATTCCTTCATAGTTATTTTGAATCTGCATTTGGGTTGTCAGTAGATTAGGTTTTTGCTCTAAACTAATCATTAGACTTTGAATTATTTGAAACACAATTAAAAAGAATCATCTGTTTGGTTGTTCTTAGATTACGTTTATAAGGGCTGTTTGTTGATCCCTTGTTTTGACTTCTTCTAATGTAATGAATATTTCAGATTGTAAACAAAATGACAAGGATGGCTTGATTGTTGCCCTCTGCCGACCGCCGACCGCCGACCTTTGTTGCTGCGTGCTGACTACAATTATTCGTTGACTGCTGTTGTTAGTTAAATAAATAAAAAATATTTTTAAATTTTTT

mRNA sequence

AGTGAAGGCTAGCTATAAACCATCGCTAAATTCATTCCGCGTGTCTCGTCTCTTTACTTCTGCAGCGGCATCTTCTTCAGCACATCCAACTCCGGCGGTGCAACTTCGATACGATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAAGAGAAGGTCAACAACATGGTTTTGTTCGATCAAGGAACTTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCCCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAAAATTCCTTCAATCTTAAGAGTTGCCTGCCATGAATTAGCGTCGTTACTCTTAGTTTTTGGTTTTTTGGTTGAATGTCAACTTTAGATGGATGCTATAATTTTGCAATTTTTGTCTGATGATATCTTCCCTGTTAATCACTACTTTTAATATTTATCAAGTTTCCAACCATTCGGGATGTTTATTGATTCCTTCATAGTTATTTTGAATCTGCATTTGGGTTGTCAGTAGATTAGGTTTTTGCTCTAAACTAATCATTAGACTTTGAATTATTTGAAACACAATTAAAAAGAATCATCTGTTTGGTTGTTCTTAGATTACGTTTATAAGGGCTGTTTGTTGATCCCTTGTTTTGACTTCTTCTAATGTAATGAATATTTCAGATTGTAAACAAAATGACAAGGATGGCTTGATTGTTGCCCTCTGCCGACCGCCGACCGCCGACCTTTGTTGCTGCGTGCTGACTACAATTATTCGTTGACTGCTGTTGTTAGTTAAATAAATAAAAAATATTTTTAAATTTTTT

Coding sequence (CDS)

ATGGCGCCAAAGAAGGATAAGGCTCCTCCACCGTCTTCCAAGCCTGCTAAATCTGGCGGAGGGAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAAGAGAAGGTCAACAACATGGTTTTGTTCGATCAAGGAACTTATGACAAGCTTCTCGTTGAAGTTCCCAAGTACAAGCTTGTCACTCCTTCAATCTTGTCCGATAGGTTGAGGATCAATGGATCCCTTGCACGAAGAGCAATCAAGGATTTGATGGCCAGAGGTCTCATCAGAATGGTCTCTGCACATGGCAGTCAGGAGATTTACACAAGGGCCACCAATACCTAA

Protein sequence

MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT

Homology

[Close]

BLAST of Carg27089 vs. NCBI nr
Match: XP_022961406.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S ribosomal protein S25-2-like [Cucurbita maxima] >XP_023545343.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo] >KAG6590412.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023962.1 40S ribosomal protein S25-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 7.7e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. NCBI nr
Match: XP_016900931.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_038878537.1 40S ribosomal protein S25-2 [Benincasa hispida] >TYK10188.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.8e-48
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. NCBI nr
Match: XP_022945101.1 (40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S ribosomal protein S25-2 [Cucurbita maxima] >XP_023541368.1 40S ribosomal protein S25-2-like [Cucurbita pepo subsp. pepo] >KAG7012952.1 40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 8.5e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVS+H SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. NCBI nr
Match: KAG6573888.1 (40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.3 bits (508), Expect = 8.5e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 75  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 134

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVS+H SQEIYTRATNT
Sbjct: 135 VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 182

[Close]

BLAST of Carg27089 vs. NCBI nr
Match: XP_022150617.1 (40S ribosomal protein S25-2-like [Momordica charantia])

HSP 1 Score: 200.3 bits (508), Expect = 8.5e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPP+SKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPASKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.6e-47
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.4e-46
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 7.0e-45
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVSAH SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Carg27089 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.2e-45
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLL E PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPS+LSDRLRI+GSLAR+AI+DLMARG IRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-42
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+ E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRAT 107
           +TPSILSDRLRINGSLAR+AI+DLM +G IRMVS H SQ+I TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of Carg27089 vs. ExPASy TrEMBL
Match: A0A6J1HUK6 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467942 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy TrEMBL
Match: A0A6J1HAA0 (40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111461987 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.7e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy TrEMBL
Match: A0A5D3CG38 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003330 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy TrEMBL
Match: A0A1S4DY71 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103492227 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAH SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHASQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. ExPASy TrEMBL
Match: A0A6J1HZE7 (40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467614 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGLIRMVS+H SQEIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSSHSSQEIYTRATNT 108

[Close]

BLAST of Carg27089 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 189.1 bits (479), Expect = 1.8e-48
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Carg27089 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-47
Identity = 94/108 (87.04%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Carg27089 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-46
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQGTYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+GLIRMVSAH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of Carg27089 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 181.0 bits (458), Expect = 5.0e-46
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G IRMVSAH SQ+IYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Carg27089 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 178.7 bits (452), Expect = 2.5e-45
Identity = 93/108 (86.11%), Postives = 102/108 (94.44%), Query Frame = 0


Query: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLVEVPKYKL 60
           MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ TYDKLL E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGLIRMVSAHGSQEIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G+IRMV+AH SQ+IYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107

The following BLAST results are available for this feature:

BLAST of Carg27089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961406.1	7.7e-49	100.00	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968822.1 40S riboso...	[more]
XP_016900931.1	3.8e-48	99.07	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_038878537.1 40S r...	[more]
XP_022945101.1	8.5e-48	98.15	40S ribosomal protein S25-2-like [Cucurbita moschata] >XP_022968354.1 40S riboso...	[more]
KAG6573888.1	8.5e-48	98.15	40S ribosomal protein S25-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022150617.1	8.5e-48	98.15	40S ribosomal protein S25-2-like [Momordica charantia]	[more]

BLAST of Carg27089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	2.6e-47	89.81	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q9T029	6.4e-46	87.04	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q8GYL5	7.0e-45	87.85	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
P46301	9.2e-45	87.04	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9SIW5	1.1e-42	84.91	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of Carg27089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HUK6	3.7e-49	100.00	40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467942 PE=3 SV=1	[more]
A0A6J1HAA0	3.7e-49	100.00	40S ribosomal protein S25 OS=Cucurbita moschata OX=3662 GN=LOC111461987 PE=3 SV=...	[more]
A0A5D3CG38	1.9e-48	99.07	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S4DY71	1.9e-48	99.07	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103492227 PE=3 SV=1	[more]
A0A6J1HZE7	4.1e-48	98.15	40S ribosomal protein S25 OS=Cucurbita maxima OX=3661 GN=LOC111467614 PE=3 SV=1	[more]

BLAST of Carg27089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	1.8e-48	89.81	Ribosomal protein S25 family protein	[more]
AT4G39200.1	4.5e-47	87.04	Ribosomal protein S25 family protein	[more]
AT2G21580.2	1.0e-46	88.89	Ribosomal protein S25 family protein	[more]
AT4G34555.1	5.0e-46	87.85	Ribosomal protein S25 family protein	[more]
AT4G39200.2	2.5e-45	86.11	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 7..105 e-value: 7.5E-42 score: 141.6
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 2..108
None	No IPR available	GENE3D	3.30.63.20		coord: 21..108 e-value: 1.3E-40 score: 139.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27089-RA	Carg27089-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome