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Carg27074 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTGAAGTTGGTCTCTTCTCAATAGAGAAAGTTGTGCGGACACATCCAAAGCTTCCTTGTTCAAAAGGTGATATCGAATGCTGAAGTTAAATGAATTGAATTACCTGCCCAAGAAATGACTAAAGTCAAAGAGGAAAGTATGTACAAAGGAGGAAACAAGTTATGAAAGGGTTTATCACCCACCAAGTGGTCCTCCCAGACATAGGTGTTTGAACCATTCCTGGCAGTGATTAATGAAATTGGAGAAAAGGGACCTAAAGACATGGCTTTCCAAGGGTTTCGGAAAGAAGGGATGTGCTATACCTGTTCACTTAAAGTATTCAGCTCCAAAGCAAAACATCACAATAATTTAGCCGAAGAGCTTCATTGCAAATCCTCAAATTGCCAACACCTATCCCTCGAAACTTAATAGGTCTCCTAACCCTCTCCCAACCAACCAAATGTGAACTATCCCCTTGACCAACACCCTCCCACATTAACCGCAAATGTTGTTTTGATTTTAAACATGACCATTTATAGACCTTTGTATTTTTGTCTTATCTCGTGCAGTATAACTGATGAAAAACAGATGTTCTCTATTTTGAATTCTGATGAGAAGATCCCATTATACTTCTCATTGTATAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGGTAAATATCAAAATAATATCTGTGATGATATTATTGATGTTTTGAGATCAATATGAACATCAATTTCTTAATGCAGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAG ATGGGTGAAGTTGGTCTCTTCTCAATAGAGAAAGTTGTGCGGACACATCCAAAGCTTCCTTGTTCAAAAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAG ATGGGTGAAGTTGGTCTCTTCTCAATAGAGAAAGTTGTGCGGACACATCCAAAGCTTCCTTGTTCAAAAGGTATTCTAGCTTGTCTTGATGGGTACATGAATATAGCAATGGAGCAAACTGAAGAATATGTTAATGGACAGTTGAAGAACAAATATGGTGATGCTTTTATCCGTGGAAATAATGTTCTATATATCAGTACTTCAAAGAGGACGTTAGCCGAAGGATCGTCATAG MGEVGLFSIEKVVRTHPKLPCSKGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGSS Homology
BLAST of Carg27074 vs. NCBI nr
Match: KAG7030535.1 (Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36 Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of Carg27074 vs. NCBI nr
Match: KAG6599859.1 (Sm-like protein LSM36B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22 Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg27074 vs. NCBI nr
Match: XP_023539899.1 (uncharacterized protein LOC111800438 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22 Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg27074 vs. NCBI nr
Match: XP_022942160.1 (sm-like protein LSM36B isoform X1 [Cucurbita moschata]) HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22 Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg27074 vs. NCBI nr
Match: XP_022988243.1 (uncharacterized protein LOC111485552 [Cucurbita maxima]) HSP 1 Score: 114.8 bits (286), Expect = 3.4e-22 Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy Swiss-Prot
Match: O22823 (Sm-like protein LSM36B OS=Arabidopsis thaliana OX=3702 GN=LSM6B PE=1 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 1.1e-20 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy Swiss-Prot
Match: Q9M1Z3 (Sm-like protein LSM6A OS=Arabidopsis thaliana OX=3702 GN=LSM6A PE=1 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 4.3e-20 Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy Swiss-Prot
Match: P62312 (U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens OX=9606 GN=LSM6 PE=1 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 4.3e-20 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy Swiss-Prot
Match: P62313 (U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus OX=10090 GN=Lsm6 PE=1 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 4.3e-20 Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy Swiss-Prot
Match: A8NHT8 (U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=LSM6 PE=3 SV=2) HSP 1 Score: 82.8 bits (203), Expect = 1.9e-15 Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy TrEMBL
Match: A0A6J1JLP5 (uncharacterized protein LOC111485552 OS=Cucurbita maxima OX=3661 GN=LOC111485552 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22 Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy TrEMBL
Match: A0A6J1FVQ8 (sm-like protein LSM36B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447304 PE=3 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22 Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy TrEMBL
Match: A0A6J1FPX7 (U6 snRNA-associated Sm-like protein LSm6 OS=Cucurbita moschata OX=3662 GN=LOC111447731 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy TrEMBL
Match: A0A0A0KSS9 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G266840 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg27074 vs. ExPASy TrEMBL
Match: A0A6J1DNH0 (sm-like protein LSM36B OS=Momordica charantia OX=3673 GN=LOC111022247 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22 Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
BLAST of Carg27074 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 100.1 bits (248), Expect = 8.0e-22 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0
BLAST of Carg27074 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 100.1 bits (248), Expect = 8.0e-22 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0
BLAST of Carg27074 vs. TAIR 10
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 98.2 bits (243), Expect = 3.0e-21 Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0
BLAST of Carg27074 vs. TAIR 10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 54.3 bits (129), Expect = 5.0e-08 Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0
BLAST of Carg27074 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F ) HSP 1 Score: 54.3 bits (129), Expect = 5.0e-08 Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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