Carg27054 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg27054
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	accelerated cell death 11
Location	Carg_Chr09: 10035723 .. 10039078 (+)
RNA-Seq Expression	Carg27054
Synteny	Carg27054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATTCAGAGCACCGACTCAGGCAAACTGCCCGGAGTGAGAGACGGGCACCTTCGTCTTTAGATGGCGGACCTGAACGTCGGCGAGAAGCCGCTGCGAAACATTTCAGAGTCGTTCAAAGCCCTTGCCGCCACTGTAAATGCTGAAACCACCGCGGTCGAGGTTGCGCCGTTTTCTCGCGCCTGCTCCTTTATTTCGCCTCTTTTTGGCTGCTTGGGCATCGCATTCAAATTCGCGGAAATGGACTATGTTGCCAAGGTATTTTAACTAGTTCCTATCTCAATTATCGAGGTGTTTGCCGCTTTTTGATCCAGAGGAACTATGGAAGATGAATTTGTGTAAATTTGATTCTAAAATTTCCAGGCCTGGTTCTTCTTTTACTCTTTAATCTTTGTAGTTTCGCACCTACAGATGATTAGCAGTTTCTTTTCTTCCATTTTGATTGATTAAGGTAAAAGAATGCATGAAAATCTAGAAATTTCTTTGATCTACAAACTTTTATTTGTTGACCTAGCAGATGATTACAATATTATCGAAACTTGTTTGAAATTGACTTGTATTGTATTTAATGAGTGCTCAAATTGAGCATAATTCAATGCACTTAATCGGAGGTAAGAGCTTCATATCCCATACCTTCCTTGTTGCGCCTGTATTCTATTTTTAGTGTAACTGGCTTGGAAGACAAATGGTTGGTATGCTATTTGTTTGTAAGATGAACACGACTCTCCACAATGGTATGATATTGTCCACTTCGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTCCCTCAAAAAGCCTCAACTCAGTGGAGAGAGTATTCATTGGTTATAAACCCATGATCATTCCCTAAATTAGCCGATGTGGGACTTTCATCCAACACCTCCCCTCGAACAAAGTACGCCTCCCCTTAATTGAGGCTCGACTCCTTTTTCTTTGCCTTCGAGGCGGGAGGCTCGACTCCTTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTCTATTGACAGGGCTAAGGACATGGCTCTGATACCATGTTAAATGAACACGACTCTCCACAATTGTATGATATTGTCCACTTCGAGCATAAGCTCTCATGGCTTTCATTTGGGCTTCCCCAAAAGGTCTCAACCCAATGGAGAGACTATTCCTTGATTATAAACTCATGACCATTCCCTATTTGCCAATGTGGGACTTTGGCGACTCTACTGGGGACAATATCATTCCCTAAAGCAAAGCCATGAAAGCTTATGCTCGAAGTGGACAATATCATACCATTGTGGAGAGTCGTATTCATCTAACACTATTTACCAATTTGTTTCTCCATGTTTGAGGTTTGATTACTCATTGACTCAACTGTGAACAGGTTAATGATCTAGTAGAATCATCTAAGTCAATTGCATCTCTACAAGTGTTGGTGGACAGAGATATTGAATCTGACTGTGTGAGGAAAGCTGGTAGCCATTCAAGAAATCTCTTGAGAGTGAAGCGCGGGATTGACATGGTCAGAGTACTCTTCGAGCAAATTTTAATCACAGAGTATGTATATCAGTCGCTTTAATGTGTTACCCTTTGCTTTAGTCACCTCTCTTTCAATATTTTAATGAACTGTTTGCTTCTATTGAATCTTTCTTGCTCTAATTTTGGCAAGTCCTAAGGCAGTTTGACTAAAAGATGTAGTAGACTCAAGATATTCTCTTTCCATTTGAAGCTAGAGTAAAGCCATCATTCATATCCTATAGAAACCTGATTAGTGATTGCAATTTACAATTAATGCAACATTTCCATTACCTTATCATCATCGTTAAACTAAACCCGATGTAGTTGTTAGGAATCCCGACCCTCCACAATAGTATGATATTGTCTACTTTGAGCATAAGCTCTCATGGTTTTGCTTTTGGGTTTCCCCAAAATGCCTCGTACCAATGGAGATAGTATTCCTTACTTATAAATCCATGATCTTCCTCTTAATTAGCCATTTTGGGATTACTTCTCTCAGTAATCCTCAACCATCCTCCTTTCGAACAAAGTACACCATAGAGCCTCCCATAAGGCCTCCTTCTCTGGAGCTCTCGAATAGCCTCCCCTTAATCGAAGCTCGACTCCTTCTCTGGAGCTCTCAAACAAAATGCACCCTTTGTTCGACACTTGAGTCACCTTTGACTACACCTTCGAGGCTCACAACTTCTTTGTTCGACACTTGAGGATTCTATTGATCGAGCTAAGTTAAGGGCATGACTCTGATACTATGTTAGGAATCCCGACTCACTACAATAGTATGATATTGTCCACTTAGAGCATAAGCTCTCATGGCTTTGCTTTTGGTTTCCCCAAAAGACCTCGTACCAATGGAGATAATATTCTTTACTTATAAACTTATGATCTTCGTCTTAATTTGCCATTGTGGGACTACTTCTTTCAATAATCTTCGTCCATAGTTTTTGCAAACATGTTGAACAATGATTCCTGATTATGGCAGAGGTAATTCCTTGAGAGATCCAGCTTCCAAAGCATATGCACAGGTATTTGCTCCTCACCATGGGTGGGCAATCAGAAAAGCTGTTGGGGCAGGGATGTATGCTCTTCCTTCGAAAGCACAACTGCTGAGGAAGCTCAATGAAGATGGTAAGTAGCATTAGTCAATCGATGAATGTGTATATTGATTAAGATTTCGATCATGATATCAAATGTATGCCTAAATTATTCTAAATACTGAATCCAGTTATTGAATTGATATGCAATTTTTATGACCTGATTTCTTAGTACTCTTGTTTTGATATCATATTTTTCATTCAGAGGCCTCAGCCAGAATCTTCATGCAAGATTATGTGGCCGCTTCTGCTCCTGTGATTCAGTATGTTGAAAAGCTCTTCTTCTCCAGAGATTTGGGCATAGATTGGTAACATATGAACTACAAATCCATAATCTTAATAATTTTGAGCACTCTATATGTAATCTACGAATGATTCATGTCTTTTCCATCTCCCCCAAAATATAAAAAAAATAAGAAATGCACTCAACTAGATATCTTCCCTTTGGTGGCTTTTATTGAACTATAAAATATCCATGAATGCATGAAGTTGTGTATACTCGTCTAATAATTATCTTTGGAAGTGAAATTCTCATAGTGCTTTGTATGTTAATTGGAAGGGAGGGTATGTATAACTCAACTAATTCGGATTACCCAACCCAACGAAGTATAAAGATTAGGTTAGGTTGGGTTGACTGTTTTTTTTTTTTCTCGTTTGATTTGGATTGAATTTTTGAAAAATCGAAAATTTGGTTTAGTTTGCAGGTTGACATTTTTTTTTTGTTGGATCAACCGACAAGCTTGAAAATATGGTTACAATTTAACC

mRNA sequence

AACATTCAGAGCACCGACTCAGGCAAACTGCCCGGAGTGAGAGACGGGCACCTTCGTCTTTAGATGGCGGACCTGAACGTCGGCGAGAAGCCGCTGCGAAACATTTCAGAGTCGTTCAAAGCCCTTGCCGCCACTGTAAATGCTGAAACCACCGCGGTCGAGGTTGCGCCGTTTTCTCGCGCCTGCTCCTTTATTTCGCCTCTTTTTGGCTGCTTGGGCATCGCATTCAAATTCGCGGAAATGGACTATGTTGCCAAGGTATTTGCTCCTCACCATGGGTGGGCAATCAGAAAAGCTGTTGGGGCAGGGATGTATGCTCTTCCTTCGAAAGCACAACTGCTGAGGAAGCTCAATGAAGATGAGGCCTCAGCCAGAATCTTCATGCAAGATTATGTGGCCGCTTCTGCTCCTGTGATTCAGTATGTTGAAAAGCTCTTCTTCTCCAGAGATTTGGGCATAGATTGGTAACATATGAACTACAAATCCATAATCTTAATAATTTTGAGCACTCTATATGTAATCTACGAATGATTCATGTCTTTTCCATCTCCCCCAAAATATAAAAAAAATAAGAAATGCACTCAACTAGATATCTTCCCTTTGGTGGCTTTTATTGAACTATAAAATATCCATGAATGCATGAAGTTGTGTATACTCGTCTAATAATTATCTTTGGAAGTGAAATTCTCATAGTGCTTTGTATGTTAATTGGAAGGGAGGGTATGTATAACTCAACTAATTCGGATTACCCAACCCAACGAAGTATAAAGATTAGGTTAGGTTGGGTTGACTGTTTTTTTTTTTTCTCGTTTGATTTGGATTGAATTTTTGAAAAATCGAAAATTTGGTTTAGTTTGCAGGTTGACATTTTTTTTTTGTTGGATCAACCGACAAGCTTGAAAATATGGTTACAATTTAACC

Coding sequence (CDS)

ATGGCGGACCTGAACGTCGGCGAGAAGCCGCTGCGAAACATTTCAGAGTCGTTCAAAGCCCTTGCCGCCACTGTAAATGCTGAAACCACCGCGGTCGAGGTTGCGCCGTTTTCTCGCGCCTGCTCCTTTATTTCGCCTCTTTTTGGCTGCTTGGGCATCGCATTCAAATTCGCGGAAATGGACTATGTTGCCAAGGTATTTGCTCCTCACCATGGGTGGGCAATCAGAAAAGCTGTTGGGGCAGGGATGTATGCTCTTCCTTCGAAAGCACAACTGCTGAGGAAGCTCAATGAAGATGAGGCCTCAGCCAGAATCTTCATGCAAGATTATGTGGCCGCTTCTGCTCCTGTGATTCAGTATGTTGAAAAGCTCTTCTTCTCCAGAGATTTGGGCATAGATTGGTAA

Protein sequence

MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEMDYVAKVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQDYVAASAPVIQYVEKLFFSRDLGIDW

Homology

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BLAST of Carg27054 vs. NCBI nr
Match: KAG7025130.1 (Accelerated cell death 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 266.9 bits (681), Expect = 9.2e-68
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAKVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQDYVAASAPVIQY 120
           DYVAKVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQDYVAASAPVIQY
Sbjct: 61  DYVAKVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQDYVAASAPVIQY 120

Query: 121 VEKLFFSRDLGIDW 135
           VEKLFFSRDLGIDW
Sbjct: 121 VEKLFFSRDLGIDW 134

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BLAST of Carg27054 vs. NCBI nr
Match: KAG6592291.1 (Accelerated cell death 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235.0 bits (598), Expect = 3.9e-58
Identity = 134/206 (65.05%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVNDLVESSKSIASLQVLVDRDIESDCVRKAGSHSRNLLRVKRGIDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ
Sbjct: 121 ITEGNSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 180

[Close]

BLAST of Carg27054 vs. NCBI nr
Match: XP_023536602.1 (accelerated cell death 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 3.9e-58
Identity = 134/206 (65.05%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVNDLVESSKSIASLQVLVDKDIESDCVRKAGSHSRNLLRVKRGIDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ
Sbjct: 121 ITEGNSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 180

[Close]

BLAST of Carg27054 vs. NCBI nr
Match: XP_022974080.1 (accelerated cell death 11 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 8.7e-58
Identity = 133/206 (64.56%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVNDLVESSKSIASLQVLVDKDIESECVRKAGSHSRNLLRVKRGVDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAVGAGMYALPSKAQLL+KLNEDEASARIFMQ
Sbjct: 121 ITEGNSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPSKAQLLKKLNEDEASARIFMQ 180

[Close]

BLAST of Carg27054 vs. NCBI nr
Match: XP_022930192.1 (accelerated cell death 11 [Cucurbita moschata])

HSP 1 Score: 232.6 bits (592), Expect = 1.9e-57
Identity = 133/206 (64.56%), Postives = 133/206 (64.56%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADLNVGEKPLRNISESFKALAATVNAET AVEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLNVGEKPLRNISESFKALAATVNAETIAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVNDLVESSKSIASLQVLVDRDIESDCVRKAGSHSRNLLRVKRGIDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ
Sbjct: 121 ITEGNSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 180

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BLAST of Carg27054 vs. ExPASy Swiss-Prot
Match: O64587 (Accelerated cell death 11 OS=Arabidopsis thaliana OX=3702 GN=ACD11 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.3e-35
Identity = 90/207 (43.48%), Postives = 104/207 (50.24%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MAD +  +KPLR IS +FK LA  VN+    V V  FS ACS +SPLFGCLGIAFKFAEM
Sbjct: 1   MAD-SEADKPLRKISAAFKKLAIIVNSPNPEVPVTQFSHACSLVSPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVDDLVRASSSISTLVVMMDKDIEADCVRKAGSHTRNLLRVKRGLDMVKVLFEQII 120

Query: 121 ------------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFM 135
                             VFAPHHGWAIRKAV  GMYALP++A LL  L EDEA+A+I M
Sbjct: 121 ASEGDNSLKDPATKSYAQVFAPHHGWAIRKAVSLGMYALPTRAHLLNMLKEDEAAAKIHM 180

[Close]

BLAST of Carg27054 vs. ExPASy Swiss-Prot
Match: Q8L7U7 (ACD11 homolog protein OS=Arabidopsis thaliana OX=3702 GN=At4g39670 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-17
Identity = 61/203 (30.05%), Postives = 87/203 (42.86%), Query Frame = 0


Query: 10  PLRNISESFKALAATVNAETT------AVEVAPFSRACSFISPLFGCLGIAFKFAEMDYV 69
           PL  I+E+F+ LA  V  + +       + +  F  AC+ +S LF CLG AFKFAEM+Y+
Sbjct: 27  PLSVITEAFEDLADLVKPQRSDEIDEDELRLDDFCSACTHVSVLFNCLGFAFKFAEMEYI 86

Query: 70  AK---------------------------------------------------------- 129
           AK                                                          
Sbjct: 87  AKVKDLVEASKTFETLHNILDLDVEKETVKTPGSHSRNLRRVRQGLDLIRAIFEQFLIAD 146

Query: 130 --------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQDYV 135
                         V AP H WA+R AV AGMY LP++ QLL +LNE + S    M+ Y+
Sbjct: 147 DYSLKDAATTAYTEVCAPFHTWAVRTAVYAGMYTLPTRDQLLLRLNETDQSVEKNMRRYM 206

[Close]

BLAST of Carg27054 vs. ExPASy TrEMBL
Match: A0A6J1ID13 (accelerated cell death 11 OS=Cucurbita maxima OX=3661 GN=LOC111472696 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.2e-58
Identity = 133/206 (64.56%), Postives = 134/206 (65.05%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVNDLVESSKSIASLQVLVDKDIESECVRKAGSHSRNLLRVKRGVDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAVGAGMYALPSKAQLL+KLNEDEASARIFMQ
Sbjct: 121 ITEGNSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPSKAQLLKKLNEDEASARIFMQ 180

[Close]

BLAST of Carg27054 vs. ExPASy TrEMBL
Match: A0A6J1EPP5 (accelerated cell death 11 OS=Cucurbita moschata OX=3662 GN=LOC111436692 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 9.3e-58
Identity = 133/206 (64.56%), Postives = 133/206 (64.56%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADLNVGEKPLRNISESFKALAATVNAET AVEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLNVGEKPLRNISESFKALAATVNAETIAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVNDLVESSKSIASLQVLVDRDIESDCVRKAGSHSRNLLRVKRGIDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ
Sbjct: 121 ITEGNSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 180

[Close]

BLAST of Carg27054 vs. ExPASy TrEMBL
Match: A0A5A7SJ29 (Accelerated cell death 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G001690 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 121/202 (59.90%), Postives = 125/202 (61.88%), Query Frame = 0


Query: 5   NVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEMDYVA 64
           ++G KPLRNISESFKALAATVNAE T VEVAPFSRACSFISPLFGCLGIAFKFAEMDYVA
Sbjct: 3   DLGVKPLRNISESFKALAATVNAENTTVEVAPFSRACSFISPLFGCLGIAFKFAEMDYVA 62

Query: 65  K----------------------------------------------------------- 124
           K                                                           
Sbjct: 63  KVNDLVESSKSIVSLQALLDKDIESDCVRKAGSHSRNLLRVKRGLDMVRVLFEQILVTEG 122

Query: 125 -------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQDYVA 135
                        VFAPHHGWAIRKAVGAGMYALP+KAQLL KLNEDEASARI MQDYVA
Sbjct: 123 NSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPTKAQLLSKLNEDEASARILMQDYVA 182

[Close]

BLAST of Carg27054 vs. ExPASy TrEMBL
Match: A0A1S3C6E5 (accelerated cell death 11 OS=Cucumis melo OX=3656 GN=LOC103497566 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.9e-51
Identity = 124/206 (60.19%), Postives = 126/206 (61.17%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           M DL V  KPLRNISESFKALAATVNAE T VEVAPFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MGDLVV--KPLRNISESFKALAATVNAENTTVEVAPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVNDLVESSKSIVSLQALLDKDIESDCVRKAGSHSRNLLRVKRGLDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAVGAGMYALP+KAQLL KLNEDEASARI MQ
Sbjct: 121 VTEGNSLRDPASKAYAQVFAPHHGWAIRKAVGAGMYALPTKAQLLSKLNEDEASARILMQ 180

[Close]

BLAST of Carg27054 vs. ExPASy TrEMBL
Match: A0A6J1CGN6 (accelerated cell death 11 OS=Momordica charantia OX=3673 GN=LOC111010660 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.6e-49
Identity = 121/206 (58.74%), Postives = 123/206 (59.71%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MADL+ GEKPLR ISESFK LAATVNA TT VEV PFSRACSFISPLFGCLGIAFKFAEM
Sbjct: 1   MADLD-GEKPLRKISESFKELAATVNAGTTEVEVTPFSRACSFISPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVRDLAESSKSIVSLQALLDKDMESDCVRKAGSHTRNLLRVKRGLDMVRVLFEQIL 120

Query: 121 -----------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQ 135
                            VFAPHHGWAIRKAV AGMYALP+KAQLL KLNEDE SAR  MQ
Sbjct: 121 VTEGNSLKDPASKAYAQVFAPHHGWAIRKAVAAGMYALPTKAQLLNKLNEDETSARTLMQ 180

[Close]

BLAST of Carg27054 vs. TAIR 10
Match: AT2G34690.1 (Glycolipid transfer protein (GLTP) family protein )

HSP 1 Score: 148.3 bits (373), Expect = 4.5e-36
Identity = 90/207 (43.48%), Postives = 104/207 (50.24%), Query Frame = 0


Query: 1   MADLNVGEKPLRNISESFKALAATVNAETTAVEVAPFSRACSFISPLFGCLGIAFKFAEM 60
           MAD +  +KPLR IS +FK LA  VN+    V V  FS ACS +SPLFGCLGIAFKFAEM
Sbjct: 1   MAD-SEADKPLRKISAAFKKLAIIVNSPNPEVPVTQFSHACSLVSPLFGCLGIAFKFAEM 60

Query: 61  DYVAK------------------------------------------------------- 120
           DYVAK                                                       
Sbjct: 61  DYVAKVDDLVRASSSISTLVVMMDKDIEADCVRKAGSHTRNLLRVKRGLDMVKVLFEQII 120

Query: 121 ------------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFM 135
                             VFAPHHGWAIRKAV  GMYALP++A LL  L EDEA+A+I M
Sbjct: 121 ASEGDNSLKDPATKSYAQVFAPHHGWAIRKAVSLGMYALPTRAHLLNMLKEDEAAAKIHM 180

[Close]

BLAST of Carg27054 vs. TAIR 10
Match: AT4G39670.1 (Glycolipid transfer protein (GLTP) family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18
Identity = 61/203 (30.05%), Postives = 87/203 (42.86%), Query Frame = 0


Query: 10  PLRNISESFKALAATVNAETT------AVEVAPFSRACSFISPLFGCLGIAFKFAEMDYV 69
           PL  I+E+F+ LA  V  + +       + +  F  AC+ +S LF CLG AFKFAEM+Y+
Sbjct: 27  PLSVITEAFEDLADLVKPQRSDEIDEDELRLDDFCSACTHVSVLFNCLGFAFKFAEMEYI 86

Query: 70  AK---------------------------------------------------------- 129
           AK                                                          
Sbjct: 87  AKVKDLVEASKTFETLHNILDLDVEKETVKTPGSHSRNLRRVRQGLDLIRAIFEQFLIAD 146

Query: 130 --------------VFAPHHGWAIRKAVGAGMYALPSKAQLLRKLNEDEASARIFMQDYV 135
                         V AP H WA+R AV AGMY LP++ QLL +LNE + S    M+ Y+
Sbjct: 147 DYSLKDAATTAYTEVCAPFHTWAVRTAVYAGMYTLPTRDQLLLRLNETDQSVEKNMRRYM 206

The following BLAST results are available for this feature:

BLAST of Carg27054 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025130.1	9.2e-68	100.00	Accelerated cell death 11 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592291.1	3.9e-58	65.05	Accelerated cell death 11, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023536602.1	3.9e-58	65.05	accelerated cell death 11 [Cucurbita pepo subsp. pepo]	[more]
XP_022974080.1	8.7e-58	64.56	accelerated cell death 11 [Cucurbita maxima]	[more]
XP_022930192.1	1.9e-57	64.56	accelerated cell death 11 [Cucurbita moschata]	[more]

BLAST of Carg27054 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64587	6.3e-35	43.48	Accelerated cell death 11 OS=Arabidopsis thaliana OX=3702 GN=ACD11 PE=1 SV=1	[more]
Q8L7U7	1.6e-17	30.05	ACD11 homolog protein OS=Arabidopsis thaliana OX=3702 GN=At4g39670 PE=2 SV=1	[more]

BLAST of Carg27054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ID13	4.2e-58	64.56	accelerated cell death 11 OS=Cucurbita maxima OX=3661 GN=LOC111472696 PE=4 SV=1	[more]
A0A6J1EPP5	9.3e-58	64.56	accelerated cell death 11 OS=Cucurbita moschata OX=3662 GN=LOC111436692 PE=4 SV=...	[more]
A0A5A7SJ29	1.3e-51	59.90	Accelerated cell death 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3C6E5	2.9e-51	60.19	accelerated cell death 11 OS=Cucumis melo OX=3656 GN=LOC103497566 PE=4 SV=1	[more]
A0A6J1CGN6	1.6e-49	58.74	accelerated cell death 11 OS=Momordica charantia OX=3673 GN=LOC111010660 PE=4 SV...	[more]

BLAST of Carg27054 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34690.1	4.5e-36	43.48	Glycolipid transfer protein (GLTP) family protein	[more]
AT4G39670.1	1.1e-18	30.05	Glycolipid transfer protein (GLTP) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036497	Glycolipid transfer protein superfamily	GENE3D	1.10.3520.10	Glycolipid transfer protein	coord: 66..134 e-value: 1.5E-20 score: 75.7 coord: 3..65 e-value: 8.1E-13 score: 50.4
IPR036497	Glycolipid transfer protein superfamily	SUPERFAMILY	110004	Glycolipid transfer protein, GLTP	coord: 27..133
IPR014830	Glycolipid transfer protein domain	PFAM	PF08718	GLTP	coord: 65..97 e-value: 1.8E-7 score: 31.5
None	No IPR available	PANTHER	PTHR10219	GLYCOLIPID TRANSFER PROTEIN-RELATED	coord: 65..134 coord: 8..66
None	No IPR available	PANTHER	PTHR10219:SF43	ACCELERATED CELL DEATH 11	coord: 65..134 coord: 8..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg27054-RA	Carg27054-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0120009	intermembrane lipid transfer
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0120013	lipid transfer activity