Carg26993 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26993
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	classical arabinogalactan protein 9-like
Location	Carg_Chr11: 9018114 .. 9018995 (-)
RNA-Seq Expression	Carg26993
Synteny	Carg26993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTCCTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCGAAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATGTAAGTTTTAAAAAATTATAATTTTTAGTTGAACGCAATTCTCCACAATGGTATAATATTGTCCATTTTGAGTAATAAGCTCTCATGCTTTGGACTTCTCCTCGTACAAATAGAGAAAGTATTATTTGATTATAAACTTATGATTATTTTCTAAATTAGTCGACGTGGGACTTTCATTTGAATATTTATGAAAGGGTGATTGACAATTGCAGAGCGGAGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGAGGAGTGGACATTGTTGATATGTGTTTTGGTTGTGCAGAGCTCCCATTTTTGGTGTCTGTGTTCCCTTGGGCTTCTCTATATTTCATTTCATTTTTACTATTATTTGCCCCCTTCTCTTGTTTGGGACATTTTTTTCTTTTAATTTACTAGCCCTTTG

mRNA sequence

ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTCCTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCGAAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATAGCGGAGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGAGGAGTGGACATTGTTGATATGTGTTTTGGTTGTGCAGAGCTCCCATTTTTGGTGTCTGTGTTCCCTTGGGCTTCTCTATATTTCATTTCATTTTTACTATTATTTGCCCCCTTCTCTTGTTTGGGACATTTTTTTCTTTTAATTTACTAGCCCTTTG

Coding sequence (CDS)

ATGATGGATCCTCAAGCTTTGTTGTGTTTCACTTTCATCTGCATTGCCTTCGCCGGCGCCGGAGCTCAGTCCCCTTCCACTCCTCCCACCGCCACTCCTCCGCCTGTTTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCCCCTCCTGTCTCAGCTCCTCCTCCAGCCACTCCCCCTCCTGTCTCAGCTCCTCCTCCATCCACTCCTCCTCCGGCATCTCCTCCTCCAGCTACTCCGCCTCCAGCAACCCCACCACCTGCGCCGTTGGCATCCCCACCAGCGGCAGTTCCAGCTCCTGCACCCCGTAAGAAGAAGTCGAAGGCAGCTTCAGCACCATCGCCCCTGTCGAGTCCACCCGCGCCATCAGCTGAGGCCCCAGTACCCACCAGCTCTGATTCTCCTACCCCATCTCAAAACGACAATAGCGGAGCGGAGGAGACGATGGTGGGGAGGATGGCGATGATTGGAATGGGATATGTATTTATGATGGTGTTAGGGTGA

Protein sequence

MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPATPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLSSPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG

Homology

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: KAG7022486.1 (hypothetical protein SDJN02_16217, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 6.2e-69
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA
Sbjct: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS
Sbjct: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 171
           SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 170

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022927816.1 (classical arabinogalactan protein 9 isoform X1 [Cucurbita moschata])

HSP 1 Score: 250.8 bits (639), Expect = 8.7e-63
Identity = 160/170 (94.12%), Postives = 163/170 (95.88%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA
Sbjct: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAVPAPAP KKKSKAASAPSPLS
Sbjct: 61  TPPPVSSPPPT-----SPPPASPPPATPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 171
           SPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETTVGRMAMIGMGYVFMMVLG 165

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022927817.1 (classical arabinogalactan protein 9 isoform X2 [Cucurbita moschata])

HSP 1 Score: 238.0 bits (606), Expect = 5.8e-59
Identity = 152/170 (89.41%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA
Sbjct: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPVS               +PPPATPPPAPLASPPAAVPAPAP KKKSKAASAPSPLS
Sbjct: 61  TPPPVS---------------SPPPATPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 171
           SPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETTVGRMAMIGMGYVFMMVLG 155

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022988984.1 (classical arabinogalactan protein 9 isoform X1 [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 4.3e-54
Identity = 146/170 (85.88%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPA
Sbjct: 1   MMDPQALLCFTFIYIVFAGAGAQSPSTPPTATPPPVSSPPP-------ATPPPVSSPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPV     S PPPASPPPATPPPATPPPAPLASPPAAVPAPAP KKKSKAAS+PSPLS
Sbjct: 61  TPPPV-----SPPPPASPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAASSPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 171
           SPPAPSAEAPVPTSSDSPTPSQNDNSGA ETMVGRM M+GMGYVFMMVLG
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAVETMVGRMVMLGMGYVFMMVLG 158

[Close]

BLAST of Carg26993 vs. NCBI nr
Match: XP_022927818.1 (classical arabinogalactan protein 9 isoform X3 [Cucurbita moschata])

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA
Sbjct: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAVPAPAP KKKSKAASAPSPLS
Sbjct: 61  TPPPVSSPPPT-----SPPPASPPPATPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSG 148
           SPPAPSAEAPVPTSSDSPTPSQNDN G
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNKG 142

[Close]

BLAST of Carg26993 vs. ExPASy Swiss-Prot
Match: Q9C5S0 (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-16
Identity = 100/186 (53.76%), Postives = 120/186 (64.52%), Query Frame = 0


Query: 13  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVS 72
           ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP +
Sbjct: 10  ICIVLIAGVTGQAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69

Query: 73  APPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-ATPPPAPLASPPAAVPAPAPR 132
            PPPVS+PPPA+PPP + PP ++PPP  ASPPPATPPP ATPPPAPLASPPA VPAPAP 
Sbjct: 70  PPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPT 129

Query: 133 KKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQ---NDNSGAEETMVGRMAMIGMG 169
            K    + +PSP SSPP PS++AP P T S SP PS    ND +GA + MV  + + G  
Sbjct: 130 TKPD--SPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGASK-MVSSL-VFGSV 189

[Close]

BLAST of Carg26993 vs. ExPASy Swiss-Prot
Match: Q9FPR2 (Lysine-rich arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=AGP18 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.5e-04
Identity = 86/196 (43.88%), Postives = 100/196 (51.02%), Query Frame = 0


Query: 2   MDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAP-------PPVSAP-------PP 61
           MD   LL  T ICI  AG G QSP + PT +P   SAP       P V++P       P 
Sbjct: 1   MDRNFLLTVTLICIVVAGVGGQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPT 60

Query: 62  VSAPPPVSAP----------PPATPPPVSAPP---PSTPPPASPPPATPPPATPPPAPLA 121
            SA  PV +P          PP TP P S+PP   P    P S PP   P A  PPAP+A
Sbjct: 61  ASASSPVESPKSPAPVSESSPPPTPVPESSPPVPAPMVSSPVSSPPVPAPVADSPPAPVA 120

Query: 122 SPPAAVPAPAPRK--------KKSKAASAPSP-LSSPPAPSAEAPVPTS-SDSPTPSQND 161
           +P A VPAPAP K        KK +AA AP+P L  PPAP  E+P P S + SP PS +D
Sbjct: 121 APVADVPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSPGPSADD 180

[Close]

BLAST of Carg26993 vs. ExPASy TrEMBL
Match: A0A6J1EIM1 (classical arabinogalactan protein 9 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434594 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.2e-63
Identity = 160/170 (94.12%), Postives = 163/170 (95.88%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA
Sbjct: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAVPAPAP KKKSKAASAPSPLS
Sbjct: 61  TPPPVSSPPPT-----SPPPASPPPATPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 171
           SPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETTVGRMAMIGMGYVFMMVLG 165

[Close]

BLAST of Carg26993 vs. ExPASy TrEMBL
Match: A0A6J1EI95 (classical arabinogalactan protein 9 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434594 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.8e-59
Identity = 152/170 (89.41%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA
Sbjct: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPVS               +PPPATPPPAPLASPPAAVPAPAP KKKSKAASAPSPLS
Sbjct: 61  TPPPVS---------------SPPPATPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 171
           SPPAPSAEAPVPTSSDSPTPSQNDNSGAEET VGRMAMIGMGYVFMMVLG
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETTVGRMAMIGMGYVFMMVLG 155

[Close]

BLAST of Carg26993 vs. ExPASy TrEMBL
Match: A0A6J1JN37 (classical arabinogalactan protein 9 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486184 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.1e-54
Identity = 146/170 (85.88%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPA
Sbjct: 1   MMDPQALLCFTFIYIVFAGAGAQSPSTPPTATPPPVSSPPP-------ATPPPVSSPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPV     S PPPASPPPATPPPATPPPAPLASPPAAVPAPAP KKKSKAAS+PSPLS
Sbjct: 61  TPPPV-----SPPPPASPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAASSPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAEETMVGRMAMIGMGYVFMMVLG 171
           SPPAPSAEAPVPTSSDSPTPSQNDNSGA ETMVGRM M+GMGYVFMMVLG
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSGAVETMVGRMVMLGMGYVFMMVLG 158

[Close]

BLAST of Carg26993 vs. ExPASy TrEMBL
Match: A0A6J1EM34 (classical arabinogalactan protein 9 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111434594 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-50
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA
Sbjct: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPVS+PPP+     SPPPA+PPPATPPPAPLASPPAAVPAPAP KKKSKAASAPSPLS
Sbjct: 61  TPPPVSSPPPT-----SPPPASPPPATPPPAPLASPPAAVPAPAPSKKKSKAASAPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSG 148
           SPPAPSAEAPVPTSSDSPTPSQNDN G
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNKG 142

[Close]

BLAST of Carg26993 vs. ExPASy TrEMBL
Match: A0A6J1JL42 (classical arabinogalactan protein 9 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486184 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.2e-43
Identity = 125/147 (85.03%), Postives = 129/147 (87.76%), Query Frame = 0


Query: 1   MMDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAPPPVSAPPPVSAPPPVSAPPPA 60
           MMDPQALLCFTFI I FAGAGAQSPSTPPTATPPPVS+PPP       + PPPVS+PPPA
Sbjct: 1   MMDPQALLCFTFIYIVFAGAGAQSPSTPPTATPPPVSSPPP-------ATPPPVSSPPPA 60

Query: 61  TPPPVSAPPPSTPPPASPPPATPPPATPPPAPLASPPAAVPAPAPRKKKSKAASAPSPLS 120
           TPPPV     S PPPASPPPATPPPATPPPAPLASPPAAVPAPAP KKKSKAAS+PSPLS
Sbjct: 61  TPPPV-----SPPPPASPPPATPPPATPPPAPLASPPAAVPAPAPSKKKSKAASSPSPLS 120

Query: 121 SPPAPSAEAPVPTSSDSPTPSQNDNSG 148
           SPPAPSAEAPVPTSSDSPTPSQNDN G
Sbjct: 121 SPPAPSAEAPVPTSSDSPTPSQNDNKG 135

[Close]

BLAST of Carg26993 vs. TAIR 10
Match: AT2G14890.2 (arabinogalactan protein 9 )

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-17
Identity = 92/159 (57.86%), Postives = 106/159 (66.67%), Query Frame = 0


Query: 13  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVS 72
           ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP +
Sbjct: 10  ICIVLIAGVTGQAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69

Query: 73  APPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-ATPPPAPLASPPAAVPAPAPR 132
            PPPVS+PPPA+PPP + PP ++PPP  ASPPPATPPP ATPPPAPLASPPA VPAPAP 
Sbjct: 70  PPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPT 129

Query: 133 KKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQND 145
            K    + +PSP SSPP PS++AP P T S SP PS  D
Sbjct: 130 TKPD--SPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTD 166

[Close]

BLAST of Carg26993 vs. TAIR 10
Match: AT2G14890.1 (arabinogalactan protein 9 )

HSP 1 Score: 85.1 bits (209), Expect = 5.9e-17
Identity = 100/186 (53.76%), Postives = 120/186 (64.52%), Query Frame = 0


Query: 13  ICIA-FAGAGAQSPSTPPT--------------ATPPPVSAPPPV--------SAPPPVS 72
           ICI   AG   Q+P++PPT              ATPPPVSAPPPV        +APPP +
Sbjct: 10  ICIVLIAGVTGQAPTSPPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPAN 69

Query: 73  APPPVSAPPPATPPPVSAPPPSTPPP--ASPPPATPPP-ATPPPAPLASPPAAVPAPAPR 132
            PPPVS+PPPA+PPP + PP ++PPP  ASPPPATPPP ATPPPAPLASPPA VPAPAP 
Sbjct: 70  PPPPVSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPT 129

Query: 133 KKKSKAASAPSPLSSPPAPSAEAPVP-TSSDSPTPSQ---NDNSGAEETMVGRMAMIGMG 169
            K    + +PSP SSPP PS++AP P T S SP PS    ND +GA + MV  + + G  
Sbjct: 130 TKPD--SPSPSPSSSPPLPSSDAPGPSTDSISPAPSPTDVNDQNGASK-MVSSL-VFGSV 189

[Close]

BLAST of Carg26993 vs. TAIR 10
Match: AT4G37450.1 (arabinogalactan protein 18 )

HSP 1 Score: 45.1 bits (105), Expect = 6.7e-05
Identity = 86/196 (43.88%), Postives = 100/196 (51.02%), Query Frame = 0


Query: 2   MDPQALLCFTFICIAFAGAGAQSPSTPPTATPPPVSAP-------PPVSAP-------PP 61
           MD   LL  T ICI  AG G QSP + PT +P   SAP       P V++P       P 
Sbjct: 1   MDRNFLLTVTLICIVVAGVGGQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPT 60

Query: 62  VSAPPPVSAP----------PPATPPPVSAPP---PSTPPPASPPPATPPPATPPPAPLA 121
            SA  PV +P          PP TP P S+PP   P    P S PP   P A  PPAP+A
Sbjct: 61  ASASSPVESPKSPAPVSESSPPPTPVPESSPPVPAPMVSSPVSSPPVPAPVADSPPAPVA 120

Query: 122 SPPAAVPAPAPRK--------KKSKAASAPSP-LSSPPAPSAEAPVPTS-SDSPTPSQND 161
           +P A VPAPAP K        KK +AA AP+P L  PPAP  E+P P S + SP PS +D
Sbjct: 121 APVADVPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSPGPSADD 180

The following BLAST results are available for this feature:

BLAST of Carg26993 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022486.1	6.2e-69	100.00	hypothetical protein SDJN02_16217, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022927816.1	8.7e-63	94.12	classical arabinogalactan protein 9 isoform X1 [Cucurbita moschata]	[more]
XP_022927817.1	5.8e-59	89.41	classical arabinogalactan protein 9 isoform X2 [Cucurbita moschata]	[more]
XP_022988984.1	4.3e-54	85.88	classical arabinogalactan protein 9 isoform X1 [Cucurbita maxima]	[more]
XP_022927818.1	2.2e-50	93.20	classical arabinogalactan protein 9 isoform X3 [Cucurbita moschata]	[more]

BLAST of Carg26993 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5S0	8.3e-16	53.76	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1...	[more]
Q9FPR2	9.5e-04	43.88	Lysine-rich arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=AGP18 ...	[more]

BLAST of Carg26993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIM1	4.2e-63	94.12	classical arabinogalactan protein 9 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1EI95	2.8e-59	89.41	classical arabinogalactan protein 9 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JN37	2.1e-54	85.88	classical arabinogalactan protein 9 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1EM34	1.1e-50	93.20	classical arabinogalactan protein 9 isoform X3 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JL42	8.2e-43	85.03	classical arabinogalactan protein 9 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Carg26993 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14890.2	4.5e-17	57.86	arabinogalactan protein 9	[more]
AT2G14890.1	5.9e-17	53.76	arabinogalactan protein 9	[more]
AT4G37450.1	6.7e-05	43.88	arabinogalactan protein 18	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 62..78 score: 44.71 coord: 41..62 score: 38.18 coord: 26..38 score: 55.38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..103
None	No IPR available	PANTHER	PTHR37209:SF1	CLASSICAL ARABINOGALACTAN PROTEIN 9	coord: 2..164
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 2..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26993-RA	Carg26993-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane