Carg26981 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26981
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosome assembly factor mrt4
Location	Carg_Chr11: 6564399 .. 6566528 (+)
RNA-Seq Expression	Carg26981
Synteny	Carg26981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGGTGAACCACTTTTTCCATATTGCATATAATTCAAGTGCTCTTTTTCTTTGTAGCCTTAAGGAATTAACATCCACTCTTCTATTTTTCAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGGTAAACCAGTTATGCTCTAGTTTTAACATTGGCAAGCACCGCCAAAAGTGATGAATTGTTAAGTTGCTATTTTGTTTTACAATTTAAATGCACATATTTAAAATTTATTCATTATGCGTTCTTTTTTTTGTTTAGAAATTGAAGTATCTGATAAATTGTAGTTTCAGTTGATTTCCATATCTATGAATACAACATTCTGAAGTTTTGATTTGGGAAAGACTGTTAAAAGTGAACATAATTATTTTGGTGTTGGAAAGAACAAAAAAGAAAATGTTAAATCCTTGAAGTTGAAGTTTTAAAAAATTGAAACTGGTTTGTCTTCAAGGTCAAAACAAATTTCCAACTTCATATTGTCACATGCTTATGATGATTTTTCTGTGCTAAATTCGGTTTGAAGTCCTACTACCCTACTAGTGGAAAATGAATAAAGAACCCCAAAACAGAAACAAAAGAAGATTGTTTTTGTCAGTAGTAAGATTCACGTAATGGGTTATTTACATTTCAATTTTAAAATAAGGGATTTCTGTATTTGATTTGGTTTACATTAATGCTTGATTTAATTTTCAATGTTTTGTTCTGCAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTTCTGCCCCTTCAGAAATAAACTTATTTTTATTTTTCATCATTCTAATACTGATGTCACTTTTTGAGTGCACTGATTCAACAAAAAGGTCTAGAATCATTCCATATCGTTAGTGTTAAAACATGCATGAACTTTGTGGTTGGTCGCCTTACTGAAGTTTAATGATATTAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCTGTTCGCTTGAACAAGGGTCAGTAAACACACACCTTTTGCCTCAAGCCCTATTTACGTTAAACAAAAATTTGGTTGTAAATCATAATTGTTGAGGGAATTGCAGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGGTTTGTATCATTTCACGACTTTCTCTTTCTTTATATATATATATATATATATTGAATATGAATGCCTTGTAAACGAGGTTTGAAGTAGTTATTGATATTGATATCGATTTTGATATTTGTTTGGTTGCAGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCCGGTGGAGTCCTGGTGAGTTCGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCCTAGAAGAAGCCCCAACACAATATTTTCCGATTAGAATTATATATATATGGGATGGATGGATGAATGAATGCATGAATGAATGACACTCTCCCCCTAGGATTAGATGCTATAATTTGAATGGGATCGGACTTCTCTCTTTTTTGTATTTTTTTTCTTCTTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGTATGTGCCCAAATCTTGTTTTGTTGTCTCTAGTGAGGATGAACGGATGTTACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGTCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATATTATTTTATGAAATTCTGTATGTGTTATAAGCGCCAGGATCCATTAGAACTGGATCTTCCATTCTGAATTAATAATCTATCGTGTGTACCGATCTTCGTCACAAAAAATCTCCACTGTTGGGCTTTGAACTGAGTGGTTCCATTTTAGTGCTAATGTTTTCTGTTAAGGAATCACGGATCTCTCCAATGGTATGAATTGTCTACTTCGAAGCATAAGCTCTCATGGCTCATGGCTTTGAATTGG

mRNA sequence

ATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCTGTTCGCTTGAACAAGGGTCAGGAATTGCAGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCCGGTGGAGTCCTGGTGAGTTCGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCCTAGAAGAAGCCCCAACACAATATTTTCCGATTAGAATTATATATATATGGGATGGATGGATGAATGAATGCATGAATGAATGACACTCTCCCCCTAGGATTAGATGCTATAATTTGAATGGGATCGGACTTCTCTCTTTTTTGTATTTTTTTTCTTCTTTCTTTTGTGTAAATTATTCAAGAAATTTTGAAGGGTATGTGCCCAAATCTTGTTTTGTTGTCTCTAGTGAGGATGAACGGATGTTACTGTGACTGGTTGGTAGATTTTGATTTGTATTATTGTCAGATCGTTGGTCTTTAAATTCTTCAAATATAGTATAGTATATTATTTTATGAAATTCTGTATGTGTTATAAGCGCCAGGATCCATTAGAACTGGATCTTCCATTCTGAATTAATAATCTATCGTGTGTACCGATCTTCGTCACAAAAAATCTCCACTGTTGGGCTTTGAACTGAGTGGTTCCATTTTAGTGCTAATGTTTTCTGTTAAGGAATCACGGATCTCTCCAATGGTATGAATTGTCTACTTCGAAGCATAAGCTCTCATGGCTCATGGCTTTGAATTGG

Coding sequence (CDS)

ATGGATAGATTGTTTTTTGGAGCAAACAAAGTCATGCAGGTTTCTCTTGGTCGAACTGCTTCCGATGAGATTCAACCAGGCCTATACAAGGTTTCTAAGCTTCTGCATGGCAATACTGGACTTTGTTTCACAAACTTACCGAAAGAAGAGGTTGAGAGATTATTTAACGAGTATGTGGATTATGATTATGCAAGGACTGGAAGTGAAGCCACAGAAAAGGTTGAGCTTAAGGAAGGTCCTCTGGAGCAGTTCAGCCATGAAATGGAGCCTTCTCTACGGAAGCTAGGATTGCCCTGTTCGCTTGAACAAGGGTCAGGAATTGCAGGTGTGGTGGAGCTTGTATCGGACTTTACTGTATGTGAGGAGGGCAAGTCTCTTTCACCAGAGTCAGCTGGCATACTGCGTGCCTTGGGGATAAGGATGGCAACTTTTCGCCTGAATTTGGTATGCCGGTGGAGTCCTGGTGAGTTCGAACTTTACATTGATGGACCAGATAATTCTGACATTGAAACTGCCTAG

Protein sequence

MDRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA

Homology

[Close]

BLAST of Carg26981 vs. NCBI nr
Match: KAG7022338.1 (mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352.4 bits (903), Expect = 2.1e-93
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MDRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVD 60
           MDRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVD
Sbjct: 1   MDRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVD 60

Query: 61  YDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVC 120
           YDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVC
Sbjct: 61  YDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVC 120

Query: 121 EEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           EEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Sbjct: 121 EEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 172

[Close]

BLAST of Carg26981 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 161/170 (94.71%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLP  L +     GVVELVSDFTVCEE
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFTVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Sbjct: 185 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Carg26981 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 160/170 (94.12%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTAS+EIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLP  L +     GVVELVSDFTVCEE
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFTVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Sbjct: 185 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Carg26981 vs. NCBI nr
Match: XP_022969955.1 (mRNA turnover protein 4 homolog [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 9.0e-84
Identity = 160/170 (94.12%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLP  L +     GVVELVSDFTVCEE
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFTVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPD SDIETA
Sbjct: 185 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of Carg26981 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 307.4 bits (786), Expect = 7.9e-80
Identity = 151/170 (88.82%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGR+AS+EI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRSASNEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLGLP  L +     GVVELVSDF VCEE
Sbjct: 125 YARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFVVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GKSLSPESAGILRALGIRMATFRL+LVCRWSPG+FELYIDGPDNSD+E+A
Sbjct: 185 GKSLSPESAGILRALGIRMATFRLHLVCRWSPGDFELYIDGPDNSDVESA 229

[Close]

BLAST of Carg26981 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 6.0e-38
Identity = 78/150 (52.00%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV+  F +Y + D
Sbjct: 64  RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYTEMD 123

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YAR G++AT  V L  GPLEQF H MEP LR+LGLP +L++     GVV L+SD+ VC+E
Sbjct: 124 YARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKK-----GVVTLLSDYEVCKE 183

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRW 153
           G  L+PE A +L+  G  MA F++++   W
Sbjct: 184 GDVLTPEQARVLKLFGYEMAEFKVSIKYMW 208

[Close]

BLAST of Carg26981 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 5.0e-37
Identity = 77/150 (51.33%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV   F +Y + D
Sbjct: 64  RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMD 123

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YAR G++A   V L  GPLEQF H MEP LR+LGLP +L++     GVV L+SD+ VC+E
Sbjct: 124 YARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKR-----GVVTLLSDYEVCKE 183

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRW 153
           G  L+PE A +L+  G  MA F++ +   W
Sbjct: 184 GDVLTPEQARVLKLFGYEMAEFKVTIKYMW 208

[Close]

BLAST of Carg26981 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-36
Identity = 77/150 (51.33%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG NKVM V+LGR+ SDE +  L++VSK L G  GL FTN  KEEV   F +Y + D
Sbjct: 64  RMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYTEMD 123

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           +AR G++AT  V L  GPL+QF H MEP LR+LGLP +L++     GVV L+SD+ VC+E
Sbjct: 124 FARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKK-----GVVTLLSDYEVCKE 183

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRW 153
           G  L+PE A IL+  G  MA F++ +   W
Sbjct: 184 GDVLTPEQARILKLFGYEMAEFKVIIKYMW 208

[Close]

BLAST of Carg26981 vs. ExPASy Swiss-Prot
Match: Q86HD3 (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.1e-27
Identity = 57/157 (36.31%), Postives = 96/157 (61.15%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           +  FG NKV+ V LG++  DE++P L+K+++ L G  GL FTN PK++V   F  Y + D
Sbjct: 64  KFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYSEKD 123

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           + R+G  + E + +KEGP+   +H ME  LR LGLP +L+      GV+ +  ++T+CE 
Sbjct: 124 FPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKN-----GVIFVDREYTLCEA 183

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 160
           G +++PE + +L+     ++ F+ ++   W+  EF L
Sbjct: 184 GVAVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

[Close]

BLAST of Carg26981 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-21
Identity = 57/170 (33.53%), Postives = 84/170 (49.41%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           R+FFG  K+   +LG T  D    GL K+SK L G+ GL FTN    E++  F      D
Sbjct: 64  RIFFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLTQVD 123

Query: 63  YARTGSEATEKVELKEGPLEQ------------FSHEMEPSLRKLGLPCSLEQGSGIAG- 122
           +AR GS AT  + +  GPL               SH +EP LR+LG+P  + +G    G 
Sbjct: 124 FARAGSVATRTITIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVCLGD 183

Query: 123 VVELVSDFTVCEEGKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFEL 160
                 D+ +C+EG++L      +L+   I ++ FR+ L+  WS    E+
Sbjct: 184 EAGEGDDYVICKEGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]

BLAST of Carg26981 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.2e-85
Identity = 161/170 (94.71%), Postives = 162/170 (95.29%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLP  L +     GVVELVSDFTVCEE
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFTVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA
Sbjct: 185 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of Carg26981 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.4e-84
Identity = 160/170 (94.12%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD
Sbjct: 65  RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLP  L +     GVVELVSDFTVCEE
Sbjct: 125 YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFTVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPD SDIETA
Sbjct: 185 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of Carg26981 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 1.8e-77
Identity = 145/170 (85.29%), Postives = 157/170 (92.35%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           RLFFGANKVMQVSLGRT SDEI+PGL+K+SKLLHGNTGLCFTNLPKEEVERLFNEY DYD
Sbjct: 65  RLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEYEDYD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           YARTGS ATEKVELKEGPLEQFSHEMEPSLRKLG+P  L +     GVVELVSDF VCEE
Sbjct: 125 YARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNK-----GVVELVSDFVVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GK+LSPESAGILRALGIRMA+FRLNLVCRWSPG+F+LYI+G DNSD+E+A
Sbjct: 185 GKALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of Carg26981 vs. ExPASy TrEMBL
Match: A0A5A7TFH5 (Ribosome assembly factor mrt4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00790 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.0e-73
Identity = 139/161 (86.34%), Postives = 149/161 (92.55%), Query Frame = 0


Query: 12  MQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEAT 71
           MQVSLGR+ASDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGS A+
Sbjct: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60

Query: 72  EKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEEGKSLSPESA 131
           EKVELKEGPLEQFSHEMEPSLRKLGLP  L +     GVVELVSDF VCEEGKSLSPESA
Sbjct: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFVVCEEGKSLSPESA 120

Query: 132 GILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           GILRALG+RMA FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 121 GILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156

[Close]

BLAST of Carg26981 vs. ExPASy TrEMBL
Match: A0A0A0LM77 (Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.9e-73
Identity = 138/165 (83.64%), Postives = 150/165 (90.91%), Query Frame = 0


Query: 8   ANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTG 67
           +NKVMQ+SLGR+ SDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTG
Sbjct: 48  SNKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTG 107

Query: 68  SEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEEGKSLS 127
           S A+EKVELKEGPL QFSHEMEPSLRKLGLP  L +     GVVELVSDF VCEEGKSLS
Sbjct: 108 SAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNK-----GVVELVSDFVVCEEGKSLS 167

Query: 128 PESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 173
           PESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 168 PESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]

BLAST of Carg26981 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-57
Identity = 110/176 (62.50%), Postives = 136/176 (77.27%), Query Frame = 0


Query: 3   RLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYD 62
           + F G+NKVMQV+LGR+A DE++ G+YKVSKLL G+TGL  T++PKEEVE LFN Y D D
Sbjct: 65  KFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSD 124

Query: 63  YARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPCSLEQGSGIAGVVELVSDFTVCEE 122
           ++RTGS A E VELKEGPLEQF+HEMEP LRKL +P  L +G+     VELV+DF VCEE
Sbjct: 125 FSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGT-----VELVADFVVCEE 184

Query: 123 GKSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDG------PDNSDIETA 173
           GK LSP+SA ILR L ++MATF+LNL+CRWSP +FELY +        D SD+ET+
Sbjct: 185 GKQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELYREDLSELYREDLSDVETS 235

The following BLAST results are available for this feature:

BLAST of Carg26981 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022338.1	2.1e-93	100.00	mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022933518.1	1.1e-84	94.71	mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover...	[more]
XP_023529350.1	3.1e-84	94.12	mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022969955.1	9.0e-84	94.12	mRNA turnover protein 4 homolog [Cucurbita maxima]	[more]
XP_038902849.1	7.9e-80	88.82	mRNA turnover protein 4 homolog [Benincasa hispida]	[more]

BLAST of Carg26981 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV84	6.0e-38	52.00	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
Q9UKD2	5.0e-37	51.33	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
Q9D0I8	1.9e-36	51.33	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
Q86HD3	8.1e-27	36.31	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ...	[more]
Q7S302	5.1e-21	33.53	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]

BLAST of Carg26981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4Z2	5.2e-85	94.71	Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3...	[more]
A0A6J1I1E2	4.4e-84	94.12	Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S...	[more]
A0A6J1DT71	1.8e-77	85.29	Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=...	[more]
A0A5A7TFH5	2.0e-73	86.34	Ribosome assembly factor mrt4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0LM77	5.9e-73	83.64	Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV...	[more]

BLAST of Carg26981 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	1.5e-57	62.50	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 63..141 e-value: 9.5E-52 score: 177.2
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 64..139 e-value: 5.4E-20 score: 71.2
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 3..153 e-value: 9.5E-52 score: 177.2
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 3..167
IPR033867	Ribosome assembly factor Mrt4	CDD	cd05796	Ribosomal_P0_like	coord: 2..127 e-value: 1.37481E-63 score: 191.252

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26981-RA	Carg26981-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005730	nucleolus