Carg26968 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26968
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 11368346 .. 11370490 (+)
RNA-Seq ExpressionCarg26968
SyntenyCarg26968
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCGGGAGAATTGCGAGAACGCACCAGAACAGCAGCTAATGATGGCTTCTGAACACTACTACCTGTTCGCATCTGCTGACCAGTTATGCGAACGCTATATCGTCATCTGCCTAACTTCATTGTGTCGCGATGATAAGCCTCTTCTCCATGAAGATGGCGAGCGTGTATTGGAGCTCTTACGAGGTATATTTGATTTTTATTCACATTGGAGTCTGAATTGCGTGATTTTATGTACTTTTCTCGCTGGCTTTTGTGGTTAATTTATCCACTAGCTCTCATTTTGGTATACGAACTCTCCAAAATAGACACAGTAAAACAGAATATGAACTACTAAAAGAAAAGGCTGAGCTGCGATTGGTTTCGAGATGTCCCTAAATATTATTATTAGACAAAAAGCTTCTGAAATGAGAACTTACAAGAATAATGATATGGAAGTTTTCCTTTCTCTCAATTTGTATCTTTTACTTGAGGTAAATTCAACTCTGAAGTCAAAGCGGTGGATGTAACTTCTAACATTTTCCAAAAAAATTATTGAGCGAATGCATCAAAATGCACGTGGTCTTGCTTGTTCTTGTTGCTTTGTATGTTTGTCATTTTGACGATGCTGTAAAACTGAAAAGTCGGATGATCAGAAGTCAGACATCTGATATATGGATTTGCATGTTTGTGGTTTTGCAAGGGTCCTTGAGATGCTGAAGGAGTTATTCATTCTGAACATTTCTCTTTTAATAGGCTTGGGAGTTGCGATGCAACTTATATTTAGCATAACACTGCTCCATAGCCTGTAATACACATCCACCTCTCCCTCCTCTCCTTTCTCGTCTGACTTGGCTACTTTTGAATATGGAGTGAGATCACTTGCTGGAATTTAGGTTAAGATCAAGCATGGGTAGACCTTTTGGAGTTGCTGGAATTTACGACTCTCCACAATGATATGATATTCCTTACTTATAAACGTATGATCATTCCTTAAACTAGCCAACGTGGGACTCCCTCCTAACAATCCTCCTCTCGAACGAAGTACACTATAGAACCTCCCTTGAGGCCTATGGAGCCCTCAAACAACCTCTCCTTAATCGAGGCTCGACTCATTCTCTAGAGAAGTATACCCTTTATTCGACACTTGAGTCACTTTTGACTACACCTTCGAGGCTCACAACTTCTTTGTACGACATTTGAGGATTCTATTGACATGGCTAAGTTAAAGTCATAGCTCTGGTACCATGTTAGGAATTACGATTCTCAATAATGGTATGATATTATCCACTTTGAGCATAAGCTCTCATGCCTTTGCTTTGGGCTTCCCCAAAAGACGTCATACCAATGGAGATGTATTCCTTACTTATTAACTCATGATCATTCCCTAAATTAGCCAATGTGAACTCCCCTCAACAATCCTCAACATTCATTTAGTATTTTAACTTCAGAACTTCAAATTACCTGCCTGTAGCATATTTTCGGAAACTATATAATAAACAACCATAACGACTATGATGCTCTGCTGATAAAGAATCAAGGGACTTGTTCTGTACTATGTCCTGCAGGCGCATAGTACGGGTTGTGAGGAATATATGAGCTTTTACATCATTCATTTGAGAAACTGTCTAAATTTTTTATCGTCTGCTGTAACTTTTGCGATGGATTTATGATTTCATTCTAATGTTGATAGGTAGGTCAACCAATAAATCCACTGAAGGGAGACAACTCATGACCAATTAAAAATCAATCCCGCAGAGAAATGAACAGGTTATCTCTGTGGTCCATGCATTCTGGTCAATGGGGTGTGTTCTCTGCTAGTGCTCTGAAAAAGCTTAAAAGAAGTTTTTCAGCAATTCAGTTCATGATGGGCACGGGTCAAAATTCCCACCGTCATAAATGAAATCGAATTTCCGGTATTGCCTAGTGGTTGATCTTTGGTGAGATGTTATATCTTGTCAAGTATCTGGAAAGGTACAATAAGAATGTGATACAGTCACAGTATATGGAATCACAAATTCAGTTCATGATGAACAAGGGTTAAAATTTGAGCAGCATTAATAGAATTTGCCAACGCCGTCTAGCAGTTGATCATCGGTCAAGATTTTATATCCTGTCAAGGGCATAGAAAGGTACAATTAAAATTAAAACATTGAAGGATGTCA

mRNA sequence

ATGTTCCGGGAGAATTGCGAGAACGCACCAGAACAGCAGCTAATGATGGCTTCTGAACACTACTACCTGTTCGCATCTGCTGACCAGTTATGCGAACGCTATATCGTCATCTGCCTAACTTCATTGTGTCGCGATGATAAGCCTCTTCTCCATGAAGATGGCGAGCGTGTATTGGAGCTCTTACGAGGTAGGTCAACCAATAAATCCACTGAAGGGAGACAACTCATGACCAATTAAAAATCAATCCCGCAGAGAAATGAACAGGTTATCTCTGTGGTCCATGCATTCTGGTCAATGGGGTGTGTTCTCTGCTAGTGCTCTGAAAAAGCTTAAAAGAAGTTTTTCAGCAATTCAGTTCATGATGGGCACGGGTCAAAATTCCCACCGTCATAAATGAAATCGAATTTCCGGTATTGCCTAGTGGTTGATCTTTGGTGAGATGTTATATCTTGTCAAGTATCTGGAAAGGTACAATAAGAATGTGATACAGTCACAGTATATGGAATCACAAATTCAGTTCATGATGAACAAGGGTTAAAATTTGAGCAGCATTAATAGAATTTGCCAACGCCGTCTAGCAGTTGATCATCGGTCAAGATTTTATATCCTGTCAAGGGCATAGAAAGGTACAATTAAAATTAAAACATTGAAGGATGTCA

Coding sequence (CDS)

ATGTTCCGGGAGAATTGCGAGAACGCACCAGAACAGCAGCTAATGATGGCTTCTGAACACTACTACCTGTTCGCATCTGCTGACCAGTTATGCGAACGCTATATCGTCATCTGCCTAACTTCATTGTGTCGCGATGATAAGCCTCTTCTCCATGAAGATGGCGAGCGTGTATTGGAGCTCTTACGAGGTAGGTCAACCAATAAATCCACTGAAGGGAGACAACTCATGACCAATTAA

Protein sequence

MFRENCENAPEQQLMMASEHYYLFASADQLCERYIVICLTSLCRDDKPLLHEDGERVLELLRGRSTNKSTEGRQLMTN
Homology
[Close]
BLAST of Carg26968 vs. NCBI nr
Match: KAG6608271.1 (hypothetical protein SDJN03_01613, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037615.1 hypothetical protein SDJN02_01244, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MFRENCENAPEQQLMMASEHYYLFASADQLCERYIVICLTSLCRDDKPLLHEDGERVLEL 60
          MFRENCENAPEQQLMMASEHYYLFASADQLCERYIVICLTSLCRDDKPLLHEDGERVLEL
Sbjct: 1  MFRENCENAPEQQLMMASEHYYLFASADQLCERYIVICLTSLCRDDKPLLHEDGERVLEL 60

Query: 61 LRGRSTNKSTEGRQLMTN 79
          LRGRSTNKSTEGRQLMTN
Sbjct: 61 LRGRSTNKSTEGRQLMTN 78

The following BLAST results are available for this feature:
BLAST of Carg26968 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6608271.12.4e-36100.00hypothetical protein SDJN03_01613, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg26968 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26968 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26968 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26968-RACarg26968-RAmRNA