Carg26960 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26960
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	histone-lysine N-methyltransferase SETD1B-like
Location	Carg_Chr13: 73576 .. 74091 (+)
RNA-Seq Expression	Carg26960
Synteny	Carg26960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACAGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACCAATCCTAACTCCCCCCTCGGCCTTAACTCTTCTAAGACCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGGTCGCCCGGCTCTATGTTGTCATCTTCGTCTTCGAGTTCTAGCAGGGAAAGAGGGACACCTGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGACTGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATAAAGGATGCTACCCAAAGTTGGTTAAGGTATTCACTAGAGATTCTAAATGA

mRNA sequence

ATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACAGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACCAATCCTAACTCCCCCCTCGGCCTTAACTCTTCTAAGACCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGGTCGCCCGGCTCTATGTTGTCATCTTCGTCTTCGAGTTCTAGCAGGGAAAGAGGGACACCTGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGACTGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATAAAGGATGCTACCCAAAGTTGGTTAAGGTATTCACTAGAGATTCTAAATGA

Coding sequence (CDS)

ATGAATAAGCTGAAGAAGGTGAGGACAAGAGACGATATGTGGATTGTGGAAGAAGATTACCACACAGGAGTATCAGCCTCGGTGCCATTCCAGTGGGAGTCAGAGCCAGGCACTCCCAAGGCCAATTTCCCTGAAAATGGGGCCTTCCTCTCTCCTCTCACGCCCCCACCTTCCTATTTCTCCACCAATCCTAACTCCCCCCTCGGCCTTAACTCTTCTAAGACCTTTCATAGAGCCAGTTTCCTCAACAATGTCTTCAGAAAGCTTTCTATGAAGGCCAGTCTGCAGCCTCGGTCGCCCGGCTCTATGTTGTCATCTTCGTCTTCGAGTTCTAGCAGGGAAAGAGGGACACCTGGAAGCCCGAGGAGATTATCATTTGATTCGAGGGTAGACGATGACAACGGCAACGAAGAGGAGACTGTTGAATCACCTGTTTCTACTTTGTCCTTTGGACATGGAAATGATAAAGGATGCTACCCAAAGTTGGTTAAGGTATTCACTAGAGATTCTAAATGA

Protein sequence

MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGSPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK

Homology

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: KAG7019099.1 (hypothetical protein SDJN02_18057, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.9 bits (873), Expect = 6.4e-90
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGS 120
           STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGS
Sbjct: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGS 120

Query: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK
Sbjct: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 171

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: KAG6583323.1 (hypothetical protein SDJN03_19255, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-89
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGS 120
           STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGS+LSSSSSSSSRERGTPGS
Sbjct: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSRERGTPGS 120

Query: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK
Sbjct: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 171

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_022964745.1 (uncharacterized protein LOC111464733 [Cucurbita moschata])

HSP 1 Score: 332.8 bits (852), Expect = 1.7e-87
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGS 120
           STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGS+LSSSSSSSSRERGTPGS
Sbjct: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSRERGTPGS 120

Query: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           PRRLSFDSRVDDDNGN+EE VESPVSTLSFGHGNDKGCYP LVKVF RDSK
Sbjct: 121 PRRLSFDSRVDDDNGNQEENVESPVSTLSFGHGNDKGCYPNLVKVFARDSK 171

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_023519368.1 (uncharacterized protein LOC111782803 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 8.7e-87
Identity = 165/171 (96.49%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKK+RTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKLRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGS 120
           STNPNSPLGLNSSK FHRASFLNNVFRKLSMKASLQPRSPGS+LSSSSSSSSRERGTPGS
Sbjct: 61  STNPNSPLGLNSSKPFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSRERGTPGS 120

Query: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           PRRLSFDSRVDDDNGNEEE VESPVSTLSFGHG DKGCYPKL KVFTRDSK
Sbjct: 121 PRRLSFDSRVDDDNGNEEENVESPVSTLSFGHGTDKGCYPKLAKVFTRDSK 171

[Close]

BLAST of Carg26960 vs. NCBI nr
Match: XP_022970378.1 (uncharacterized protein LOC111469381 [Cucurbita maxima])

HSP 1 Score: 329.3 bits (843), Expect = 1.9e-86
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSML-SSSSSSSSRERGTPG 120
           STNPNSPLGLNSSK FHRASFLNNVFRKLSMKASLQPRSPGS+L SSSSSSSSRERGTPG
Sbjct: 61  STNPNSPLGLNSSKPFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSSRERGTPG 120

Query: 121 SPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           SPRRLSFDSRVDDDNGNEEE VESPVSTLSFGHGND+GCYPKLVKVFTRDSK
Sbjct: 121 SPRRLSFDSRVDDDNGNEEENVESPVSTLSFGHGNDEGCYPKLVKVFTRDSK 172

[Close]

BLAST of Carg26960 vs. ExPASy TrEMBL
Match: A0A6J1HLP7 (uncharacterized protein LOC111464733 OS=Cucurbita moschata OX=3662 GN=LOC111464733 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.5e-88
Identity = 166/171 (97.08%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGS 120
           STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGS+LSSSSSSSSRERGTPGS
Sbjct: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSRERGTPGS 120

Query: 121 PRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           PRRLSFDSRVDDDNGN+EE VESPVSTLSFGHGNDKGCYP LVKVF RDSK
Sbjct: 121 PRRLSFDSRVDDDNGNQEENVESPVSTLSFGHGNDKGCYPNLVKVFARDSK 171

[Close]

BLAST of Carg26960 vs. ExPASy TrEMBL
Match: A0A6J1I3P2 (uncharacterized protein LOC111469381 OS=Cucurbita maxima OX=3661 GN=LOC111469381 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.4e-87
Identity = 167/172 (97.09%), Postives = 169/172 (98.26%), Query Frame = 0


Query: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60
           MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF
Sbjct: 1   MNKLKKVRTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYF 60

Query: 61  STNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSML-SSSSSSSSRERGTPG 120
           STNPNSPLGLNSSK FHRASFLNNVFRKLSMKASLQPRSPGS+L SSSSSSSSRERGTPG
Sbjct: 61  STNPNSPLGLNSSKPFHRASFLNNVFRKLSMKASLQPRSPGSLLSSSSSSSSSRERGTPG 120

Query: 121 SPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDSK 172
           SPRRLSFDSRVDDDNGNEEE VESPVSTLSFGHGND+GCYPKLVKVFTRDSK
Sbjct: 121 SPRRLSFDSRVDDDNGNEEENVESPVSTLSFGHGNDEGCYPKLVKVFTRDSK 172

[Close]

BLAST of Carg26960 vs. ExPASy TrEMBL
Match: A0A5D3BF70 (NADPH oxidase activator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00550 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-47
Identity = 115/181 (63.54%), Postives = 135/181 (74.59%), Query Frame = 0


Query: 3   KLKKVRTRDDM---WIVEEDYHTGVSASVPFQWESEPGTPKANFPE--NGAFLSPLTPPP 62
           +LKK+RTRDDM    + EEDYHTG+SASVPF+WESEPGTPKAN  +  NG+ LSPLTPPP
Sbjct: 20  RLKKLRTRDDMSRIMVEEEDYHTGLSASVPFKWESEPGTPKANLHDNNNGSLLSPLTPPP 79

Query: 63  SYFST----NPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSR 122
           SYFS     N +  + L+S  +F++ S LN VFR LS+K +LQP SP    SSSSSS + 
Sbjct: 80  SYFSNHLIINSSPIIHLSSKPSFNKPSCLNTVFRMLSVKPTLQPPSPA---SSSSSSPTM 139

Query: 123 ERGTPGSPRRLSFDSRVDD---DNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDS 172
           ER   GSPRRLSFDSRVDD   D+ NE+  VESPVSTL FG G++KGCYP LVKVFTR S
Sbjct: 140 ERRRSGSPRRLSFDSRVDDDDEDDENEDGNVESPVSTLFFGRGSEKGCYPNLVKVFTRHS 197

[Close]

BLAST of Carg26960 vs. ExPASy TrEMBL
Match: A0A1S3C5A7 (uncharacterized protein At4g00950 OS=Cucumis melo OX=3656 GN=LOC103497034 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-47
Identity = 115/181 (63.54%), Postives = 135/181 (74.59%), Query Frame = 0


Query: 3   KLKKVRTRDDM---WIVEEDYHTGVSASVPFQWESEPGTPKANFPE--NGAFLSPLTPPP 62
           +LKK+RTRDDM    + EEDYHTG+SASVPF+WESEPGTPKAN  +  NG+ LSPLTPPP
Sbjct: 20  RLKKLRTRDDMSRIMVEEEDYHTGLSASVPFKWESEPGTPKANLHDNNNGSLLSPLTPPP 79

Query: 63  SYFST----NPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSR 122
           SYFS     N +  + L+S  +F++ S LN VFR LS+K +LQP SP    SSSSSS + 
Sbjct: 80  SYFSNHLIINSSPIIHLSSKPSFNKPSCLNTVFRMLSVKPTLQPPSPA---SSSSSSPTM 139

Query: 123 ERGTPGSPRRLSFDSRVDD---DNGNEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDS 172
           ER   GSPRRLSFDSRVDD   D+ NE+  VESPVSTL FG G++KGCYP LVKVFTR S
Sbjct: 140 ERRRSGSPRRLSFDSRVDDDDEDDENEDGNVESPVSTLFFGRGSEKGCYPNLVKVFTRHS 197

[Close]

BLAST of Carg26960 vs. ExPASy TrEMBL
Match: A0A0A0LYC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533640 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 5.2e-45
Identity = 115/181 (63.54%), Postives = 134/181 (74.03%), Query Frame = 0


Query: 3   KLKKVRTRDDM---WIVEEDYHTGVSASVPFQWESEPGTPKANFPENG--AFLSPLTPPP 62
           +LKK+R R+DM    + EEDYHTG+SASVPFQWESEPGTPKAN  +    + LSPLTPPP
Sbjct: 20  RLKKLRKREDMSTIMVEEEDYHTGLSASVPFQWESEPGTPKANLNDRNSRSLLSPLTPPP 79

Query: 63  SYFST----NPNSPLGLNSSKTFHRASFLNNVFRKLSMKAS-LQPRSPGSMLSSSSSSSS 122
           SYFS     N +  + L+S  +F++ SFLN VFRKLS+K S LQP SP    SSSSSSS+
Sbjct: 80  SYFSNHLIINSSPMIHLSSKPSFNKPSFLNTVFRKLSVKPSTLQPPSPA---SSSSSSST 139

Query: 123 RERGTPGSPRRLSFDSRVDDDNG--NEEETVESPVSTLSFGHGNDKGCYPKLVKVFTRDS 172
            ER    SPRRLSFDSRVDDD+   NE+  +ESPVSTL FG  +DKGCYPKLVKVFTR S
Sbjct: 140 MERRRYASPRRLSFDSRVDDDDDDENEDGNLESPVSTLFFGRRSDKGCYPKLVKVFTRYS 197

[Close]

BLAST of Carg26960 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-15
Identity = 70/171 (40.94%), Postives = 85/171 (49.71%), Query Frame = 0


Query: 16  VEEDYHTGVSASVPFQWESEPGTPKA----------------NFPENGAFLSPLTPPPSY 75
           VE DY+ G SA+VPF+WES+PGTP+                 NFP +    +PLTPPPSY
Sbjct: 20  VEGDYYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVS----APLTPPPSY 79

Query: 76  FSTNPNSPLGLNSSKTFHRASFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPG 135
           F  +P+S   ++  KT       N +F  L  K    P SP S  SSSSSSSS     P 
Sbjct: 80  FYASPSSTKHVSPKKT-------NTLFSSLLSKNRSVPSSPAS--SSSSSSSS----VPS 139

Query: 136 SPRRLSFDSRVDDDNGNEEETVESPVSTLSFGHGNDK--GCYPKLVKVFTR 169
           SP R S     D  N       ES  S+L +G  + K  GCY  LVKV  R
Sbjct: 140 SPLRTS-----DLSNRRRSMWFESG-SSLDYGSNSAKSSGCYASLVKVLLR 167

[Close]

BLAST of Carg26960 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 52/135 (38.52%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 20  YHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSPLGLNSSKTFHRA 79
           Y+ G  ASVPF WE+ PGTPK         L PLTPPPSY+S++ +S   L+ ++T  + 
Sbjct: 32  YYYG-GASVPFLWETRPGTPKHALFSESLRLPPLTPPPSYYSSSSSSGNKLSKARTIKQT 91

Query: 80  SFLNNVFRKLSMKASLQPRSPGSMLSSSSSSSSRERGTPGSPRRLSFDSRVDDDNGNEEE 139
            F+  +  +   + S    S  S  SSS SSSS        PR+    SR      +EEE
Sbjct: 92  RFVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPSKVEHRPRKCYSCSRSYVKEDDEEE 151

Query: 140 TV-ESPVSTLSFGHG 154
            V  SP STL +  G
Sbjct: 152 IVSSSPTSTLCYKRG 165

[Close]

BLAST of Carg26960 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 60/157 (38.22%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 8   RTRDDMWIVEEDYHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFSTNPNSP 67
           R  DD  I EE       AS+PF WES PGTPK +   + +   PLTPPPSY+S+   S 
Sbjct: 4   RLEDDFAIDEERSSYYGGASIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILST 63

Query: 68  LGLNSSKTFHRASFLN-NVFRKL--SMKASLQPRSPGSMLSSSSSSSSRERGTPGS-PRR 127
               S      + FL+ ++F  L  S   S +  S     SS+SSSSS     P S  +R
Sbjct: 64  PRTQSKVRSKLSKFLSFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSSFSSSPPHSLKKR 123

Query: 128 LSFD--SRVDDDNGNEEETVESPVSTLSFGHGNDKGC 159
           +S D  S +   N  E+E   SP STL   +G   GC
Sbjct: 124 MSHDKKSPLLYANYEEDELRSSPTSTLCCSNGGRLGC 160

[Close]

BLAST of Carg26960 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 20  YHTGVSASVPFQWESEPGTPKANFPENGAFLSPLTPPPSYFS 62
           Y+ G + +VPF+WES PGTPK    E    L PLTPPPS+FS
Sbjct: 67  YYDGAAGAVPFEWESHPGTPKHPSSELPT-LPPLTPPPSHFS 107

The following BLAST results are available for this feature:

BLAST of Carg26960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019099.1	6.4e-90	100.00	hypothetical protein SDJN02_18057, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583323.1	1.4e-89	99.42	hypothetical protein SDJN03_19255, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022964745.1	1.7e-87	97.08	uncharacterized protein LOC111464733 [Cucurbita moschata]	[more]
XP_023519368.1	8.7e-87	96.49	uncharacterized protein LOC111782803 [Cucurbita pepo subsp. pepo]	[more]
XP_022970378.1	1.9e-86	97.09	uncharacterized protein LOC111469381 [Cucurbita maxima]	[more]

BLAST of Carg26960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLP7	8.5e-88	97.08	uncharacterized protein LOC111464733 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]
A0A6J1I3P2	9.4e-87	97.09	uncharacterized protein LOC111469381 OS=Cucurbita maxima OX=3661 GN=LOC111469381...	[more]
A0A5D3BF70	5.5e-47	63.54	NADPH oxidase activator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C5A7	5.5e-47	63.54	uncharacterized protein At4g00950 OS=Cucumis melo OX=3656 GN=LOC103497034 PE=4 S...	[more]
A0A0A0LYC9	5.2e-45	63.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533640 PE=4 SV=1	[more]

BLAST of Carg26960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06930.1	9.4e-15	40.94	unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; ...	[more]
AT2G40475.1	1.7e-11	38.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G56260.2	1.8e-10	38.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G01790.1	2.1e-06	57.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007789	Protein of unknown function DUF688	PFAM	PF05097	DUF688	coord: 26..149 e-value: 6.7E-6 score: 25.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..66
None	No IPR available	PANTHER	PTHR33257	OS05G0165500 PROTEIN	coord: 11..169
None	No IPR available	PANTHER	PTHR33257:SF43	EXPRESSED PROTEIN	coord: 11..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26960-RA	Carg26960-RA	mRNA