Carg26950 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26950
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 3676327 .. 3681783 (-)
RNA-Seq Expression	Carg26950
Synteny	Carg26950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAACCAAGTACTTCGAAATCAGACTGAGAATCTGCCTGGGTCATTTTTAGTCCTGGAACATATTGTTTGTCACAACATCACTAAACTACAGCATCCAGTGAACACTTACACCCGGTAATTCCATGAGGATGAAACAATCACTGAATAATAAATATGATGAGAATTGGGATCAGAATAGAAAGATTCGATATCAATTATAAGAAGAACTTCCAAAGTTTCCCATATGTCCACTAACTGGAAGTCAAGACCGAATTAGTTGCAGAAAGACTTCAAACACTCTTTTCAGATTTCTGGCATTTGATAGTGCTCCGATCAATATGTCTAGGATTTTTTAGTGTAAAAACAGTCAAATAGATATTTGACATTTAACTGCATAGTCGAGGTGATTTTAGAAGTAGATAACAGCGAATTGTACTTTGCAGATTGATGCATGCACAAATTTTTGGCCTCCTCTGGGAAATATGCCTTTGGGGGCCCTCTCCTGACCATGGCTCCATGTCAGAAAAAGAGTCATTTTTTTAGGGGAGGGAGGAAAAGAGAGAGTAGTAAATGATCTTCTTGTGGGGGGGTGGTAGAGAGAGGCAACTGATGAGAGATAGTTCATATGTTCTGCTAACTGAGGAGGCAATAATTTGTGAAGCCAATCATAATCTGCAAAGTAAAATCCTTTTTCTACTTCTAAAATGATGACTATGAGGTTAAATGTTCACTAATTGACTTTTTTTATTGAATAAAAAATTACCTAGACATATTCGAGCACTATCAATGCGAAATTGAAAGAGTGTTGAAGCATTCTTCGATTTCTTTTGGGTTCCGGTTGCTTGAAATGGGAAATCTTTTGAGTTTTTGTGTTATATATGATATCGATCTTTTCCTTTCTGCATCACTTAATTTTTAATATCCATTTTTATTTTCATCAGTGATTGTTTCAGCCTCATTGGAATCCGGGGTAGGTTCACTGGATGGTTGTGCTAGTGATGTTGTGAAACAAATGAGTTTCCAGGTACTACATTATATATGGTAATGCTTTTTCACTTGGCAGTATTTTTCGTCTGTATTTTCAGACTGTTAGTCATAATATTTATATCTTTTTGATTGATGTGAACAGTTCCTGGAAAAGTCTGAGGACTTTCGTGTGGTATTTGTGGGTTTGCCCCCATCACGTCTTACTCAAGGTGGCTGGCCAATCAAAGGGCAAAACTTGCTATGTGTGAAGTTACCCTAGGGTGACTCTTAATCAGTGAGTGAGAGGCCCGCTGCAATCCAATTCAAGATTACATAAGAAACGTATCACATCTGGTGATCTGAAAGGATGGCAAACAACTTTATCTTCTTCATAAAAAAATTTTATATATCCATCCGCCAGCAGTGTCTTGTTTTGTTATTGCAAACTTCATTTGCCAGGAGTGTACTTGAAGATAGAGTAGTATTAGTGACCTTAATCTTGACTGTTTATCTTCTTATGAATGCTACCAAATTTAAAAGAATAAAAATCGATCTTTCGTTAAATTTTGTATGGGTTTTGTCACTTTTTAAAAATGAATAAACAAAAAGGATTTTTATTGATTTGGTTTAAAGTTTATGTCGGCTTCTCTTTGAATTTTTTCCTAAAACAAGAGATAAAGGATTTAGAATATATTCCATTTCATTTTCAGCAGGAAACCTTGAAATAATGAGTGGTCAAAATGAGAGGGGTGTTCGGAGCTCATGTGCTTTGTTTTCGTGGCGTTTGTTTCTTCAACTAACTTTGTGCTGAAATTTCAGATTTTGGCTGCAACTGGATAGGACCCTCGTTACCTGATCTTCTTTCTACATGCATTGGTAAGGAATTTCAGCGTCATTGCATCTGACTGAGAGTATATGTTATGAGATTGAGAAATACTTTGGACATCATTTGGGTTTTGGTGGTAGGGTACATTCTTTATTCCTGGTTTCCTTGCTTGTAAAGACCACAGACAATACTGAAAGACAATAAAAGGAAACAGACAACCCAAGTTTATGGCGTGCAATTTACATCAAGATAAATGTAATAAAATGAGTTATCAAAATGTTTTTTCTAGAAGTGTCATGATCTATCGTAGTACCTAAATAAGAACTAGAATAGTGCTAATTGGCCTTTCGATATTTCAACAATCCATATTCTTTTAATAGGTATTATCATGGCTTACTCCCCAGCAACTTCTCAATTGGACAAAAGAGTCCACTTGTAGCCAGCTGTGGATTGATAGATAGATCCATTCATACGCGAGATATTCGTTAAAAGACAAAATAGATAAATATATTATAAAAAAAGTACTTTTTCTTTCAATTGAAAAACCTTAGGTTGGATCCATAGAACCTTTTTCCCTATGTCGAGAAAAAGGTGGTTGGTTAAGGTTCTCAGTGAAGGAAGACTATTGGCGATCGCAAGGAGAGCTGTGGTCCATTTGAAGGGAGTTAATCCTCCGTCAAAAAAGACTCGTATATAGTGACTTACAAGTTGTTGCTTGATTCGTTTTTCATTTTTCTAAAGCTTTTTTTGTTATCTTTTTCGTGTGATTGTTGTGATTTATTTTTCTTTGTTTTAAAAGAAATATACAATATTAATAAAGTATAAATATTACCCATTTTTCAGTGTTATTTGAGTTTTCTTATTCAAAGGTATTATTTTCATGATAGTGTCCTCTTCTATGCGAAGGTTTTTAAAGGTTTGTTAACTTTCATGCATGTGAACAAGTTTCACATATCTACATTAGTTGATTGTGATGGGATTAAACTATGATACTGAAACCTTTCAGTTTTCCACCTTTGGTTGTTGTGGTGTTCTTGTAGCGGTGGAAAATGTAGATTATAGTGTGAGGTGGTTGTCGGACATAGAGACTGATAAAAATAAACGTCACGAGCATGGTTACGGAATAGTACAAGCAATAGTATGAAGTAGCAGCATTGGTAGCATTAGGTAGTGAAGTTCTAGGATGATAGTGAAATGCAGAGACAGGTTAGCCAGCGTACTTGAAACGCAGAGTTGCTGATTCTTATCTGCAGGCAGTCTTTGGATTGTGGTCTCAAATGACCAGAATCGAGCCATAATCAGTGGCCGAGAAATTGTAATGCTTGATTAATTGTTTCTGAGAGAATAGAATTCTATTATTGCCTCTTCCTGCCTTGTTACAGCAGTTTGACTCTGGGAGTATGGTTTGTGTTTGATGACATGGTAATGCCTAATATTTTGGGCTTGAGCTGTATATGCAATTCTGCTGATTGGATCACCGTATTTGGTAACAAGTCTTTACTTTTCCAATTTCCGCTCGATATATGTCGCATTGCTTTAATCGAAGATCCTTGATTTTTTAAAACTTACTTTTCAAACACTTAAAATCTAACCAAAAACAGAAACAAGTTTTTGGAAAAATTGATTGATTGGGAAACATTAAAAAAGATTATCAAGACTTGGCAATTTTGAGACTTATTCTTAAAACGAGAAGGAACAATAGCCAAATCAGTTATGTAACTAGGATTCTTTCGCTATTGTATGATGTGGGAAAGCTGTCTTTGGGTTGTTAATGAGTTGGTAACCACATTTCTGTTGGATTTTGACCATATTGTGTTTGGTAATTACTTTTTTATTTGGGCGGCTTGAGTTTTTTACATATTTCATTTGAAAGTTGAAGCTATCGAAGGATCCACATTTGAGGATTTATGTTACTTTTGATGATGAACCTTTTGACTAATTAAGAGAGACTTTTTTTTGTTACTCTCTTTGGATACGTAGTTGGTCTGATGTATAAAGGTTTCTCTCTTTTTTTTAATTTTGCATATAATCATGAAATATATTTTTTAAATGACAAAAGGAAATTTACTCATACTGAACTCTTGGATTTTTTTTGTTCTTTTTTGTTATGACTTGGTAGTAGTCTTCTAAATATTTTCTATTTGAAGAGAAAAATTTGGGACCTCTAGAATATTTACTGCGTTAATTGAACTTTTTAGGAGTATTATTACGGGATCTCTGTTTCAGGGATGCAGATTTCGGATTAGATCAATAATTGGTACATAGGTGCTTCAAATTCAGGATGGCTTTCAAATCCGAGTTTACATCCACCGAGCTCAAACAATTCGCTTTAACAGGAAGTTTAGTATGTCTATGTTGGATCGTCCTGGGACTGGGATGAGAGTGACAGGGCCGTGGATTGACATTGAAGAGTCTCCCTTTTTGCATATTTTGGGAGCTTGGAGACTTCTTGTGAATCGATGTTTTTTACCATTTGGGGAGGTAATTGTCCATGTGTTTTATGGAATCTTAATGCTGCAAGTATACTACTATGAATAGTTGTTATGTTGCATCTCAAGTTCATGGTGATGATTCGGTTTATGATTTTTTATCCTGATTTGTTGTTGTTTAAAGTTAGATGCAGGTCAGGTGAGTTACTTCGTTAACCTTTATGTGTGTAAGTTTCTTTTCACCGAGGAACAACGAATTCTCATTGGAGATGATTTGTGGTGCTTAATTGCAACGATTATTCTGCATTGATATAAGATCGTACCTAATTTTTAGAAATTGACACTGATGATAGGATGGAGAGTAGTGTCAGTTATTAGTGTGTGTGAATTAACAAGTACCCAAGTTTTGATAAAAATTAGAGTCAGTGAAGGTTTAGTTATTTAGGCAACATTGTAGAGTAGTGATGAATGTTGTGTTCGATGCGTCCATCTCCCTCAGTTTCAATTTGAAAGCAGTTTATCAACTTTTTTTTTTGTCCTTTCCTTCATATTCCTACTGGATTAGTGAGATCACTCATGAGCTCATCATGGTTAAATGTATACTTCTGCTGAAAGCCCCCAAGTGAGCTGGGCTGAGGTCCATAGTCTGTATCGTTTTCGCTCCAGATGAGTAGCCTGGTATTATTGCTGATATGTTGTCGTGATAGTAGGGTAGCAGTCCGAGGTGGGGTCTATGGATGGTTTCTGATGCAGAATGCGTGTTTGCCTGTGGGGTTTTCCCTCCTTCGATAGCTCAACCCCACTGTTACAAAACATACCATAGGATGGAGGTTTGCTAAGCTATAGATCATGAAAGTCACAAACAATGCATATGATCCTCAGTAACAGCCAATCATAAACTCCAGTGGTCTTCTTCCTGGAAGTTTGTCAAATTACCAAGTATGAAGCTCATGATAGAGCACCTGTGTCTCGGCAGAATATGAGCAGTTGAAAATCTATACAAGTGGATTTTCTTCATCAATTACTTCCGAAGTCCATATATCTCCTAAATCTCTCGGGGAGCTAGGAGAGTTCAAGATTTAAATGCACAAACAGCTACATATATGGTGCAGACAGCCACCCTCTTTCGCCACTGTCGATTTGTCGGGATGAGAAAGAAGTGGTATCTCCTCGAATCAAGAATCCATCAAAGGAGTTTCTAAGAGTGCAGATACGAAGAGCTGAACTATATCACATGTTGACCAAATGGTGA

mRNA sequence

ATGACTAACCAAGTACTTCGAAATCAGACTGAGAATCTGCCTGGGTCATTTTTAGTCCTGGAACATATTGTTTGTCACAACATCACTAAACTACAGCATCCAGTGAACACTTACACCCGAGAGAGGCAACTGATGAGAGATAGTTCATATGTTCTGCTAACTGAGGAGGCAATAATTTGTGAAGCCAATCATAATCTGCAAATGATTGTTTCAGCCTCATTGGAATCCGGGGTAGGTTCACTGGATGGTTGTGCTAGTGATGTTGTGAAACAAATGAGTTTCCAGTTCCTGGAAAAGTCTGAGGACTTTCGTGTGGTATTTGTGGGTTTGCCCCCATCACGTCTTACTCAAGCAGGAAACCTTGAAATAATGAGTGGTCAAAATGAGAGGGGTGTTCGGAGCTCATGTGCTTTGTTTTCGTGGCCGGTGGAAAATGTAGATTATAGTGTGAGGTGGTTGTCGGACATAGAGACTGATAAAAATAAACGTCACGAGCATGGCAGTCTTTGGATTGTGGTCTCAAATGACCAGAATCGAGCCATAATCAGTGGCCGAGAAATTGATGGCTTTCAAATCCGAGTTTACATCCACCGAGCTCAAACAATTCGCTTTAACAGGAAGTTTAGTATGTCTATGTTGGATCGTCCTGGGACTGGGATGAGAGTGACAGGGCCGTGGATTGACATTGAAGAGTCTCCCTTTTTGCATATTTTGGGAGCTTGGAGACTTCTTGTGAATCGATGTTTTTTACCATTTGGGGAGGGTAGCAGTCCGAGGTGGGGTCTATGGATGGTTTCTGATGCAGAATGCGTGTTTGCCTGTGGGGTTTTCCCTCCTTCGATAGCTCAACCCCACTGTTACAAAACATACCATAGGATGGAGCCAATCATAAACTCCAGTGGTCTTCTTCCTGGAAGTTTGTCAAATTACCAAAGCACCTGTGTCTCGGCAGAATATGAGCAGTTGAAAATCTATACAAGTGGATTTTCTTCATCAATTACTTCCGAAGTCCATATATCTCCTAAATCTCTCGGGGAGCTAGGAGACTACATATATGGTGCAGACAGCCACCCTCTTTCGCCACTGTCGATTTGTCGGGATGAGAAAGAAGTGGTATCTCCTCGAATCAAGAATCCATCAAAGGAGTTTCTAAGAGTGCAGATACGAAGAGCTGAACTATATCACATGTTGACCAAATGGTGA

Coding sequence (CDS)

ATGACTAACCAAGTACTTCGAAATCAGACTGAGAATCTGCCTGGGTCATTTTTAGTCCTGGAACATATTGTTTGTCACAACATCACTAAACTACAGCATCCAGTGAACACTTACACCCGAGAGAGGCAACTGATGAGAGATAGTTCATATGTTCTGCTAACTGAGGAGGCAATAATTTGTGAAGCCAATCATAATCTGCAAATGATTGTTTCAGCCTCATTGGAATCCGGGGTAGGTTCACTGGATGGTTGTGCTAGTGATGTTGTGAAACAAATGAGTTTCCAGTTCCTGGAAAAGTCTGAGGACTTTCGTGTGGTATTTGTGGGTTTGCCCCCATCACGTCTTACTCAAGCAGGAAACCTTGAAATAATGAGTGGTCAAAATGAGAGGGGTGTTCGGAGCTCATGTGCTTTGTTTTCGTGGCCGGTGGAAAATGTAGATTATAGTGTGAGGTGGTTGTCGGACATAGAGACTGATAAAAATAAACGTCACGAGCATGGCAGTCTTTGGATTGTGGTCTCAAATGACCAGAATCGAGCCATAATCAGTGGCCGAGAAATTGATGGCTTTCAAATCCGAGTTTACATCCACCGAGCTCAAACAATTCGCTTTAACAGGAAGTTTAGTATGTCTATGTTGGATCGTCCTGGGACTGGGATGAGAGTGACAGGGCCGTGGATTGACATTGAAGAGTCTCCCTTTTTGCATATTTTGGGAGCTTGGAGACTTCTTGTGAATCGATGTTTTTTACCATTTGGGGAGGGTAGCAGTCCGAGGTGGGGTCTATGGATGGTTTCTGATGCAGAATGCGTGTTTGCCTGTGGGGTTTTCCCTCCTTCGATAGCTCAACCCCACTGTTACAAAACATACCATAGGATGGAGCCAATCATAAACTCCAGTGGTCTTCTTCCTGGAAGTTTGTCAAATTACCAAAGCACCTGTGTCTCGGCAGAATATGAGCAGTTGAAAATCTATACAAGTGGATTTTCTTCATCAATTACTTCCGAAGTCCATATATCTCCTAAATCTCTCGGGGAGCTAGGAGACTACATATATGGTGCAGACAGCCACCCTCTTTCGCCACTGTCGATTTGTCGGGATGAGAAAGAAGTGGTATCTCCTCGAATCAAGAATCCATCAAAGGAGTTTCTAAGAGTGCAGATACGAAGAGCTGAACTATATCACATGTTGACCAAATGGTGA

Protein sequence

MTNQVLRNQTENLPGSFLVLEHIVCHNITKLQHPVNTYTRERQLMRDSSYVLLTEEAIICEANHNLQMIVSASLESGVGSLDGCASDVVKQMSFQFLEKSEDFRVVFVGLPPSRLTQAGNLEIMSGQNERGVRSSCALFSWPVENVDYSVRWLSDIETDKNKRHEHGSLWIVVSNDQNRAIISGREIDGFQIRVYIHRAQTIRFNRKFSMSMLDRPGTGMRVTGPWIDIEESPFLHILGAWRLLVNRCFLPFGEGSSPRWGLWMVSDAECVFACGVFPPSIAQPHCYKTYHRMEPIINSSGLLPGSLSNYQSTCVSAEYEQLKIYTSGFSSSITSEVHISPKSLGELGDYIYGADSHPLSPLSICRDEKEVVSPRIKNPSKEFLRVQIRRAELYHMLTKW

Homology

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BLAST of Carg26950 vs. NCBI nr
Match: KAG7022020.1 (hypothetical protein SDJN02_15749, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 825.9 bits (2132), Expect = 1.5e-235
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0


Query: 1   MTNQVLRNQTENLPGSFLVLEHIVCHNITKLQHPVNTYTRERQLMRDSSYVLLTEEAIIC 60
           MTNQVLRNQTENLPGSFLVLEHIVCHNITKLQHPVNTYTRERQLMRDSSYVLLTEEAIIC
Sbjct: 1   MTNQVLRNQTENLPGSFLVLEHIVCHNITKLQHPVNTYTRERQLMRDSSYVLLTEEAIIC 60

Query: 61  EANHNLQMIVSASLESGVGSLDGCASDVVKQMSFQFLEKSEDFRVVFVGLPPSRLTQAGN 120
           EANHNLQMIVSASLESGVGSLDGCASDVVKQMSFQFLEKSEDFRVVFVGLPPSRLTQAGN
Sbjct: 61  EANHNLQMIVSASLESGVGSLDGCASDVVKQMSFQFLEKSEDFRVVFVGLPPSRLTQAGN 120

Query: 121 LEIMSGQNERGVRSSCALFSWPVENVDYSVRWLSDIETDKNKRHEHGSLWIVVSNDQNRA 180
           LEIMSGQNERGVRSSCALFSWPVENVDYSVRWLSDIETDKNKRHEHGSLWIVVSNDQNRA
Sbjct: 121 LEIMSGQNERGVRSSCALFSWPVENVDYSVRWLSDIETDKNKRHEHGSLWIVVSNDQNRA 180

Query: 181 IISGREIDGFQIRVYIHRAQTIRFNRKFSMSMLDRPGTGMRVTGPWIDIEESPFLHILGA 240
           IISGREIDGFQIRVYIHRAQTIRFNRKFSMSMLDRPGTGMRVTGPWIDIEESPFLHILGA
Sbjct: 181 IISGREIDGFQIRVYIHRAQTIRFNRKFSMSMLDRPGTGMRVTGPWIDIEESPFLHILGA 240

Query: 241 WRLLVNRCFLPFGEGSSPRWGLWMVSDAECVFACGVFPPSIAQPHCYKTYHRMEPIINSS 300
           WRLLVNRCFLPFGEGSSPRWGLWMVSDAECVFACGVFPPSIAQPHCYKTYHRMEPIINSS
Sbjct: 241 WRLLVNRCFLPFGEGSSPRWGLWMVSDAECVFACGVFPPSIAQPHCYKTYHRMEPIINSS 300

Query: 301 GLLPGSLSNYQSTCVSAEYEQLKIYTSGFSSSITSEVHISPKSLGELGDYIYGADSHPLS 360
           GLLPGSLSNYQSTCVSAEYEQLKIYTSGFSSSITSEVHISPKSLGELGDYIYGADSHPLS
Sbjct: 301 GLLPGSLSNYQSTCVSAEYEQLKIYTSGFSSSITSEVHISPKSLGELGDYIYGADSHPLS 360

Query: 361 PLSICRDEKEVVSPRIKNPSKEFLRVQIRRAELYHMLTKW 401
           PLSICRDEKEVVSPRIKNPSKEFLRVQIRRAELYHMLTKW
Sbjct: 361 PLSICRDEKEVVSPRIKNPSKEFLRVQIRRAELYHMLTKW 400

The following BLAST results are available for this feature:

BLAST of Carg26950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022020.1	1.5e-235	100.00	hypothetical protein SDJN02_15749, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg26950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26950 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26950-RA	Carg26950-RA	mRNA