Carg26948 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26948
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 13-like
LocationCarg_Chr11: 3667575 .. 3667754 (+)
RNA-Seq ExpressionCarg26948
SyntenyCarg26948
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

mRNA sequence

ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

Coding sequence (CDS)

ATGGCGGCCATGAAGTTTGAAGCTTTGATGGTGGCAATGGTGGTGGCTGTCATGGCCTTCTCCTCCTCCATTGTTGCAGCTCAAGAAGCTCCGGCGCCAAGCCCTGCCTCTGATGCTCCACTGTCCCTCCCAACTTTAATGGCTTCTCTTGCTCCTCTTGTTCTTCCCTTCTTCCTCTGA

Protein sequence

MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
Homology
BLAST of Carg26948 vs. NCBI nr
Match: KAG7022018.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL 60
          MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL
Sbjct: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL 59

BLAST of Carg26948 vs. NCBI nr
Match: XP_022988237.1 (arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0

Query: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL 60
          M AMKF+ALM+AMVV  MA SS+IVAAQEAPAPSPASDAPLSLPTLMASLAPL L FFL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFFL 59

BLAST of Carg26948 vs. NCBI nr
Match: KAG7023913.1 (Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL 60
          M AMKF+ALM+AMVV  MA SS+IVAAQEAPAPSPASDA LSLPTLMASLAPL L FFL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDASLSLPTLMASLAPLALGFFL 59

BLAST of Carg26948 vs. NCBI nr
Match: XP_038879727.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 50/61 (81.97%), Postives = 54/61 (88.52%), Query Frame = 0

Query: 1  MAAMKFEAL-MVAMVVAVMAF-SSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF 60
          M AMK +AL M+ MVV +MAF SSSIVAAQEAPAPSPASDAP+SLPTLMASLAPLVL FF
Sbjct: 1  MEAMKSQALMMMIMVVVLMAFSSSSIVAAQEAPAPSPASDAPISLPTLMASLAPLVLGFF 60

BLAST of Carg26948 vs. NCBI nr
Match: XP_011660059.1 (arabinogalactan protein 13 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 2.6e-06
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 2  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF 59
          AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Sbjct: 4  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

BLAST of Carg26948 vs. ExPASy TrEMBL
Match: A0A6J1JCI6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0

Query: 1  MAAMKFEALMVAMVVAVMAFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFFL 60
          M AMKF+ALM+AMVV  MA SS+IVAAQEAPAPSPASDAPLSLPTLMASLAPL L FFL
Sbjct: 1  MEAMKFQALMLAMVVGAMALSSTIVAAQEAPAPSPASDAPLSLPTLMASLAPLALGFFL 59

BLAST of Carg26948 vs. ExPASy TrEMBL
Match: A0A0A0LWU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-06
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 2  AAMKFEALMVAMVVAVM---AFSSSIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPFF 59
          AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Sbjct: 4  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF 63

BLAST of Carg26948 vs. TAIR 10
Match: AT4G26320.1 (arabinogalactan protein 13 )

HSP 1 Score: 40.0 bits (92), Expect = 7.5e-04
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 1  MAAMKFEALMVAMVVAVMAFSS-SIVAAQEAPAPSPASDAPLSLPTLMASLAPLVLPF 58
          M AMK   L VA++VA MAFS+    AA EAPAPSP SDA L++P   AS+A L   F
Sbjct: 1  MEAMKMR-LFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7022018.12.5e-17100.00Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022988237.11.4e-1284.75arabinogalactan peptide 13-like [Cucurbita maxima][more]
KAG7023913.11.2e-1183.05Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038879727.11.1e-0981.97arabinogalactan protein 13-like [Benincasa hispida][more]
XP_011660059.12.6e-0666.67arabinogalactan protein 13 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JCI66.9e-1384.75arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111485538 PE=3... [more]
A0A0A0LWU91.3e-0666.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G599540 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G26320.17.5e-0455.17arabinogalactan protein 13 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26948-RACarg26948-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane