Carg26847 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26847
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein RALF-like 4
Location	Carg_Chr11: 8800178 .. 8800534 (+)
RNA-Seq Expression	Carg26847
Synteny	Carg26847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCTGCCTCGTTCTCCTCCTCGTCTTTGCGGTCGTTGCTCCGCTCTCCTTTGCCTTCCATGAAGCCTCCCACAGTTCATCCCTCCTCGATGATAATTCTGAATATAGCTTCTTTGGCGGAGACTCCTCCGAAGCTATGACTGAAGATAGTCGACGACAACTTTTTCAATATGGATTCGTCTATAATAAGGAAGCTCGCAAGAGGTTTTTGAGCTACTATGCACTTAGTAAGAATAATATCCCTTGCGGCCGTCGTGGTACCTCCTACTATGATTGCAAGAAGCGTAGAAGGATTAATCCTTATCGTCGCGGTTGCGCCGCCATCACTGGATGTGCTCGATTCACCGATTAA

mRNA sequence

ATGAAGATCTGCCTCGTTCTCCTCCTCGTCTTTGCGGTCGTTGCTCCGCTCTCCTTTGCCTTCCATGAAGCCTCCCACAGTTCATCCCTCCTCGATGATAATTCTGAATATAGCTTCTTTGGCGGAGACTCCTCCGAAGCTATGACTGAAGATAGTCGACGACAACTTTTTCAATATGGATTCGTCTATAATAAGGAAGCTCGCAAGAGGTTTTTGAGCTACTATGCACTTAGTAAGAATAATATCCCTTGCGGCCGTCGTGGTACCTCCTACTATGATTGCAAGAAGCGTAGAAGGATTAATCCTTATCGTCGCGGTTGCGCCGCCATCACTGGATGTGCTCGATTCACCGATTAA

Coding sequence (CDS)

ATGAAGATCTGCCTCGTTCTCCTCCTCGTCTTTGCGGTCGTTGCTCCGCTCTCCTTTGCCTTCCATGAAGCCTCCCACAGTTCATCCCTCCTCGATGATAATTCTGAATATAGCTTCTTTGGCGGAGACTCCTCCGAAGCTATGACTGAAGATAGTCGACGACAACTTTTTCAATATGGATTCGTCTATAATAAGGAAGCTCGCAAGAGGTTTTTGAGCTACTATGCACTTAGTAAGAATAATATCCCTTGCGGCCGTCGTGGTACCTCCTACTATGATTGCAAGAAGCGTAGAAGGATTAATCCTTATCGTCGCGGTTGCGCCGCCATCACTGGATGTGCTCGATTCACCGATTAA

Protein sequence

MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYGFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD

Homology

[Close]

BLAST of Carg26847 vs. NCBI nr
Match: KAG6588679.1 (Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022466.1 Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG
Sbjct: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 118

[Close]

BLAST of Carg26847 vs. NCBI nr
Match: XP_022927736.1 (rapid alkalinization factor 23-like [Cucurbita moschata])

HSP 1 Score: 227.3 bits (578), Expect = 7.1e-56
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MKI LVLLLVF  VAPLSFAFHEASHSSSLLDDNS+YSFFGGDSSEAMTEDSRRQLFQYG
Sbjct: 4   MKIYLVLLLVFTAVAPLSFAFHEASHSSSLLDDNSQYSFFGGDSSEAMTEDSRRQLFQYG 63

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 64  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 121

[Close]

BLAST of Carg26847 vs. NCBI nr
Match: XP_023530159.1 (protein RALF-like 19 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 2.8e-52
Identity = 112/119 (94.12%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MKICLVLLLV-FAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQY 60
           MKICLVLLLV FAVVAPLSFAFHE SHSSSLL DNS+YSFFGGDSSEAMTEDSRRQLFQY
Sbjct: 4   MKICLVLLLVFFAVVAPLSFAFHETSHSSSLL-DNSQYSFFGGDSSEAMTEDSRRQLFQY 63

Query: 61  GFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           GF YN EARKR LSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 64  GFAYNAEARKRVLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 121

[Close]

BLAST of Carg26847 vs. NCBI nr
Match: XP_022989015.1 (protein RALF-like 4 [Cucurbita maxima])

HSP 1 Score: 213.8 bits (543), Expect = 8.2e-52
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MKICL LLLVFAVVAP S AFHE S+ SSL+DDNS+YSFFGGDSSE+MTEDSRRQLFQYG
Sbjct: 4   MKICLFLLLVFAVVAPFSVAFHETSYDSSLVDDNSKYSFFGGDSSESMTEDSRRQLFQYG 63

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           F YN EARKRFL+YYALSKNNIPCGRRG+SYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 64  FAYNTEARKRFLTYYALSKNNIPCGRRGSSYYDCKKRRRINPYRRGCAAITGCARFTD 121

[Close]

BLAST of Carg26847 vs. NCBI nr
Match: XP_023531888.1 (protein RALF-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MK+C+ LLLVF VV P SFAFHE SHSSSLLDD S+YSFFGGDSSEAMTED+RRQLFQYG
Sbjct: 18  MKLCIFLLLVFVVVVPFSFAFHETSHSSSLLDDISKYSFFGGDSSEAMTEDTRRQLFQYG 77

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           F YN EARKR LSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 78  FAYNAEARKRVLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 135

[Close]

BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q6NME6 (Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.2e-14
Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 0


Query: 1   MKICLVL-LLVFAVVAPLSFAFHEASHS----SSLLDDNSEYSFFGGDSSEAMTEDSRRQ 60
           +KI L+L LL  AVVA  + A    + S       + ++ E  +         +E +RRQ
Sbjct: 3   IKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYL------MDSETNRRQ 62

Query: 61  LFQYGFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCAR 118
           L          AR+ ++SY AL KNN+PC RRG SYYDCKKR+R NPYRRGC+ IT C R
Sbjct: 63  L---------AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYR 109

[Close]

BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q9FZA0 (Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.9e-13
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 1   MKICLVL-LLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAM--TEDSRRQLF 60
           +K+ L+  LL+ A+VA    A +  + S      N +      D  E++  +E +RRQL 
Sbjct: 3   VKMLLIFGLLILAMVAKSVNATYPLTKSCI----NGQGCIGEDDELESLMDSETNRRQLA 62

Query: 61  QYGFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARF 117
           +          +R++ Y AL KNN+PC RRG SYYDCKKRRR NPYRRGC+AIT C R+
Sbjct: 63  R---------GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-11
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 28  SSLLDDNSEYSFFGGDSSEAMTEDS---RRQLFQYGFVYNKEARKRFLSYYALSKNNIPC 87
           S+ L D  +  + GG+  E    DS   RR L          A +R++SY AL +N IPC
Sbjct: 57  SAALGDGGDLFYGGGEMGEEFEMDSEINRRIL----------ATRRYISYGALRRNTIPC 116

Query: 88  GRRGTSYYDCKKRRRINPYRRGCAAITGCAR 116
            RRG SYY+C++  + NPY RGC+AIT C R
Sbjct: 117 SRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q945T0 (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.5e-11
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 67  ARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGC 114
           A K+++SY AL KN++PC RRG SYY+CK   + NPY RGC+AIT C
Sbjct: 67  ATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRC 113

[Close]

BLAST of Carg26847 vs. ExPASy Swiss-Prot
Match: Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.0e-10
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 67  ARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCAR 116
           A  +++SY AL +N +PC RRG SYY+C++  + NPY RGC+AIT C R
Sbjct: 68  ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]

BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1EIG3 (rapid alkalinization factor 23-like OS=Cucurbita moschata OX=3662 GN=LOC111434549 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MKI LVLLLVF  VAPLSFAFHEASHSSSLLDDNS+YSFFGGDSSEAMTEDSRRQLFQYG
Sbjct: 4   MKIYLVLLLVFTAVAPLSFAFHEASHSSSLLDDNSQYSFFGGDSSEAMTEDSRRQLFQYG 63

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 64  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 121

[Close]

BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1JL71 (protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486206 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.0e-52
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MKICL LLLVFAVVAP S AFHE S+ SSL+DDNS+YSFFGGDSSE+MTEDSRRQLFQYG
Sbjct: 4   MKICLFLLLVFAVVAPFSVAFHETSYDSSLVDDNSKYSFFGGDSSESMTEDSRRQLFQYG 63

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           F YN EARKRFL+YYALSKNNIPCGRRG+SYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 64  FAYNTEARKRFLTYYALSKNNIPCGRRGSSYYDCKKRRRINPYRRGCAAITGCARFTD 121

[Close]

BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1JIT9 (protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486203 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 6.7e-52
Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSS--EAMTEDSRRQLFQ 60
           MKICL LLLVFA+VAPLSFAFHE SH SSL+DDNSEYSFFGG SS  EAMTEDSRRQLF+
Sbjct: 4   MKICLFLLLVFALVAPLSFAFHETSHGSSLVDDNSEYSFFGGGSSEAEAMTEDSRRQLFE 63

Query: 61  YGFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           YGF YN+EARKRFL+YYALSKNNIPCGRRG SYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 64  YGFAYNREARKRFLTYYALSKNNIPCGRRGHSYYDCKKRRRINPYRRGCAAITGCARFTD 123

[Close]

BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1JN66 (protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486205 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.7e-50
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MK+ + LLLVF VV PLSFA HE S++SSL+DDNSEYSFFGGDSSEAMTEDSRRQLFQYG
Sbjct: 4   MKLYIFLLLVFVVVIPLSFALHETSNASSLVDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 63

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           F YNKEARKR+LSYYAL +NNIPCGRRGTSYYDCKKRR INPYRRGCAAITGCARFTD
Sbjct: 64  FAYNKEARKRYLSYYALRQNNIPCGRRGTSYYDCKKRRTINPYRRGCAAITGCARFTD 121

[Close]

BLAST of Carg26847 vs. ExPASy TrEMBL
Match: A0A6J1EI16 (protein RALF-like 19 OS=Cucurbita moschata OX=3662 GN=LOC111434550 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.1e-49
Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MKICLVLLLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAMTEDSRRQLFQYG 60
           MK+ + +LLVF V  PLSFA HE S++SSL++DN+ YSFFGGDSSEAMTEDSRRQLFQYG
Sbjct: 4   MKLSIFILLVFVVAVPLSFALHETSNASSLVNDNAAYSFFGGDSSEAMTEDSRRQLFQYG 63

Query: 61  FVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 119
           FVYNKEARKR+LSYYAL +NNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD
Sbjct: 64  FVYNKEARKRYLSYYALRQNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARFTD 121

[Close]

BLAST of Carg26847 vs. TAIR 10
Match: AT2G33775.1 (ralf-like 19 )

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-15
Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 0


Query: 1   MKICLVL-LLVFAVVAPLSFAFHEASHS----SSLLDDNSEYSFFGGDSSEAMTEDSRRQ 60
           +KI L+L LL  AVVA  + A    + S       + ++ E  +         +E +RRQ
Sbjct: 3   IKILLILGLLTLAVVAESANATWTLTKSCVNGQGCIGEDGELDYL------MDSETNRRQ 62

Query: 61  LFQYGFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCAR 118
           L          AR+ ++SY AL KNN+PC RRG SYYDCKKR+R NPYRRGC+ IT C R
Sbjct: 63  L---------AARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCYR 109

[Close]

BLAST of Carg26847 vs. TAIR 10
Match: AT1G28270.1 (ralf-like 4 )

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-14
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 1   MKICLVL-LLVFAVVAPLSFAFHEASHSSSLLDDNSEYSFFGGDSSEAM--TEDSRRQLF 60
           +K+ L+  LL+ A+VA    A +  + S      N +      D  E++  +E +RRQL 
Sbjct: 3   VKMLLIFGLLILAMVAKSVNATYPLTKSCI----NGQGCIGEDDELESLMDSETNRRQLA 62

Query: 61  QYGFVYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCARF 117
           +          +R++ Y AL KNN+PC RRG SYYDCKKRRR NPYRRGC+AIT C R+
Sbjct: 63  R---------GRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCYRY 108

[Close]

BLAST of Carg26847 vs. TAIR 10
Match: AT3G16570.1 (rapid alkalinization factor 23 )

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12
Identity = 39/91 (42.86%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 28  SSLLDDNSEYSFFGGDSSEAMTEDS---RRQLFQYGFVYNKEARKRFLSYYALSKNNIPC 87
           S+ L D  +  + GG+  E    DS   RR L          A +R++SY AL +N IPC
Sbjct: 57  SAALGDGGDLFYGGGEMGEEFEMDSEINRRIL----------ATRRYISYGALRRNTIPC 116

Query: 88  GRRGTSYYDCKKRRRINPYRRGCAAITGCAR 116
            RRG SYY+C++  + NPY RGC+AIT C R
Sbjct: 117 SRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

[Close]

BLAST of Carg26847 vs. TAIR 10
Match: AT4G15800.1 (ralf-like 33 )

HSP 1 Score: 64.7 bits (156), Expect = 5.7e-11
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 67  ARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCAR 116
           A  +++SY AL +N +PC RRG SYY+C++  + NPY RGC+AIT C R
Sbjct: 68  ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 116

[Close]

BLAST of Carg26847 vs. TAIR 10
Match: AT3G05490.1 (ralf-like 22 )

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-10
Identity = 36/114 (31.58%), Postives = 60/114 (52.63%), Query Frame = 0


Query: 10  VFAVVAPLSFAFHEASHSSSLLD--------DNSEYSFFGGDSSEAMTEDSRRQLFQYGF 69
           ++AV+A L+        +    D         +S +S   G  +E + E+   + F    
Sbjct: 7   IYAVIAILAIVISAVESTGDFGDSLDFVRAGSSSLFSGCTGSIAECIAEEEEME-FDSDI 66

Query: 70  VYNKEARKRFLSYYALSKNNIPCGRRGTSYYDCKKRRRINPYRRGCAAITGCAR 116
                A+K+++SY A+ +N++PC RRG SYY+C++  + NPY RGC+ IT C R
Sbjct: 67  SRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

The following BLAST results are available for this feature:

BLAST of Carg26847 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588679.1	2.0e-58	100.00	Protein RALF-like 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022466...	[more]
XP_022927736.1	7.1e-56	96.61	rapid alkalinization factor 23-like [Cucurbita moschata]	[more]
XP_023530159.1	2.8e-52	94.12	protein RALF-like 19 [Cucurbita pepo subsp. pepo]	[more]
XP_022989015.1	8.2e-52	88.98	protein RALF-like 4 [Cucurbita maxima]	[more]
XP_023531888.1	1.1e-51	88.98	protein RALF-like 4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg26847 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NME6	9.2e-14	43.44	Protein RALF-like 19 OS=Arabidopsis thaliana OX=3702 GN=RALFL19 PE=3 SV=1	[more]
Q9FZA0	5.9e-13	42.86	Protein RALF-like 4 OS=Arabidopsis thaliana OX=3702 GN=RALFL4 PE=1 SV=1	[more]
Q9LUS7	3.3e-11	42.86	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
Q945T0	9.5e-11	59.57	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
Q8L9P8	8.0e-10	53.06	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]

BLAST of Carg26847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIG3	3.5e-56	96.61	rapid alkalinization factor 23-like OS=Cucurbita moschata OX=3662 GN=LOC11143454...	[more]
A0A6J1JL71	4.0e-52	88.98	protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486206 PE=3 SV=1	[more]
A0A6J1JIT9	6.7e-52	89.17	protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486203 PE=3 SV=1	[more]
A0A6J1JN66	3.7e-50	86.44	protein RALF-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111486205 PE=3 SV=1	[more]
A0A6J1EI16	3.1e-49	83.90	protein RALF-like 19 OS=Cucurbita moschata OX=3662 GN=LOC111434550 PE=3 SV=1	[more]

BLAST of Carg26847 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33775.1	6.5e-15	43.44	ralf-like 19	[more]
AT1G28270.1	4.2e-14	42.86	ralf-like 4	[more]
AT3G16570.1	2.3e-12	42.86	rapid alkalinization factor 23	[more]
AT4G15800.1	5.7e-11	53.06	ralf-like 33	[more]
AT3G05490.1	2.8e-10	31.58	ralf-like 22	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 58..115 e-value: 2.9E-19 score: 69.8
None	No IPR available	PANTHER	PTHR33136	RAPID ALKALINIZATION FACTOR-LIKE	coord: 2..117
None	No IPR available	PANTHER	PTHR33136:SF84	PROTEIN RALF-LIKE 19	coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26847-RA	Carg26847-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region