Carg26804 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26804
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 11166729 .. 11168228 (+)
RNA-Seq ExpressionCarg26804
SyntenyCarg26804
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCATCTCACAATCTACCCCCTTGGGGGCCCAGTGACACAATCGCGCTTTCGAAGGCAGCGGACTAGCGATTGTGCGGCACTCACTTTCCAGCGACAAGTGAGTTAAGCCTATTTGTTCTTGTGTCGCCTACGGCCAAGCGACGTACGATCGAGCCTCTAGCCTCGGTTTTAAAAGAAGGTTTTAGAAAACGAGGAGAGAGAGAGATTTTAGAAAGAGACGTTATATAAGCAAGCAAGAGAAAGATAACAACGGCTTAGCATATATAACCTTGGGTAGGGAGAAGTTGACGACTAGTCATATCCCCCTATAGTACATTCTGGGCCATTTTAGTTCTGGCAGGCCTAGACATAATATTTTTGAGGTGTCATACGCTCTAGAATTACAAAAGGAAAAACACTAGAATGAAAAGACATGACAAGGGTTTGGCTTGTCATGGGCATGCGGCCATGGGCAACATGCCCTGGACAAGCATGACCGTGACACCCAGCGTCCTCGCTAGCACATCATAGGTTTTCATCCAACGAGGGACAAGTTTCCACACCATTATAAGCTCTATTCCCCTCTTTAACTAATGTGGGATCTCACATTCCACCCCTCTTGGGATCCCAACGTCCTTGTTGGCACACCATAAGTTTCCACGCTCTTGTAAGTAATGCTCCATTCCCACAATCCACCCCTCTTGGAGGCCAGCGTCCTCGCTAGAACACCATAGGTTTCTACACGTAATGTTTCATTCTCCTCTTCAATTGAGGAGAGGTTTCCACACCCTTTATAAGGAAGCTTCATTCCCCTTTCCAGCCAGGGAGAAGTTTCTATACCCTTATAAGAAATGTTTCATTCCCCTCTCCACTCCAGTTAAGGAGAGGTTTTCACACTCTTACAAGTAATGTTTTGTTTTCATCTCCAATGTAAGATCTCACATCTATGGTATGATGTGATCATGTCATACTGTATAAAATTGTTATGAATCGACGATCCATGATGCATAAACCTTTATAGACCATGTCATAATGATATGTTATGTATGAAAGAATGTATCAGCCATTCACAAACTCATTATGTTATAGATGAATGAAAGTTTGTCTTGCATCATAAATTGTGTCATGATTAGAAACTATAGAGACCTCATACATATTTTTGTTTCACATACATCATAATATTTTTCCATTACGATAAGTATACGACTTATAATTTACGACCTTTATTGTTATGGGCCTAAAAAACAATTATGTACAGTCATAAGACATAAAATTAAATATACTATAACATCTTTAACTTGTATTTTGAGAATGAATTTATTTATATTTTTGCCAGAAATTTCTGCGGAACATTCTCTTTATCCACGTGCGTAGCACGAGCGATGCAATCGGTCAACTCGCGGATGCAATTGCTGGACCTCGACGTTTCATTTTGCCTGCGAAACTGAGCTTGCTTTCCCCCACGCAGAACCCAGTTTCCGAGATCTTGCCATCGCCATTTTTGAGCACTGAGTAG

mRNA sequence

ATGTGGCATCTCACAATCTACCCCCTTGGGGGCCCAGTGACACAATCGCGCTTTCGAAGGCAGCGGACTAGCGATTGTGCGGCACTCACTTTCCAGCGACAAAAATTTCTGCGGAACATTCTCTTTATCCACGTGCGTAGCACGAGCGATGCAATCGGTCAACTCGCGGATGCAATTGCTGGACCTCGACGTTTCATTTTGCCTGCGAAACTGAGCTTGCTTTCCCCCACGCAGAACCCAGTTTCCGAGATCTTGCCATCGCCATTTTTGAGCACTGAGTAG

Coding sequence (CDS)

ATGTGGCATCTCACAATCTACCCCCTTGGGGGCCCAGTGACACAATCGCGCTTTCGAAGGCAGCGGACTAGCGATTGTGCGGCACTCACTTTCCAGCGACAAAAATTTCTGCGGAACATTCTCTTTATCCACGTGCGTAGCACGAGCGATGCAATCGGTCAACTCGCGGATGCAATTGCTGGACCTCGACGTTTCATTTTGCCTGCGAAACTGAGCTTGCTTTCCCCCACGCAGAACCCAGTTTCCGAGATCTTGCCATCGCCATTTTTGAGCACTGAGTAG

Protein sequence

MWHLTIYPLGGPVTQSRFRRQRTSDCAALTFQRQKFLRNILFIHVRSTSDAIGQLADAIAGPRRFILPAKLSLLSPTQNPVSEILPSPFLSTE
Homology
[Close]
BLAST of Carg26804 vs. NCBI nr
Match: KAG7013195.1 (hypothetical protein SDJN02_25952, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 3.8e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MWHLTIYPLGGPVTQSRFRRQRTSDCAALTFQRQKFLRNILFIHVRSTSDAIGQLADAIA 60
          MWHLTIYPLGGPVTQSRFRRQRTSDCAALTFQRQKFLRNILFIHVRSTSDAIGQLADAIA
Sbjct: 1  MWHLTIYPLGGPVTQSRFRRQRTSDCAALTFQRQKFLRNILFIHVRSTSDAIGQLADAIA 60

Query: 61 GPRRFILPAKLSLLSPTQNPVSEILPSPFLSTE 94
          GPRRFILPAKLSLLSPTQNPVSEILPSPFLSTE
Sbjct: 61 GPRRFILPAKLSLLSPTQNPVSEILPSPFLSTE 93

The following BLAST results are available for this feature:
BLAST of Carg26804 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013195.13.8e-44100.00hypothetical protein SDJN02_25952, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26804 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26804 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26804 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26804-RACarg26804-RAmRNA