Carg26734 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26734
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 3641655 .. 3642380 (-)
RNA-Seq ExpressionCarg26734
SyntenyCarg26734
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATCAAAGACGAAGTCCAACATGGCTTCAACCTCCGAATCACCCAACCCTTGAAAATTAGACTGCCTATCTACCACCAACGTATTAAGATTCAAAATCTTTGAACTTTGATTCTCCTATCTCTCTTCGTTGCACACAAAGGGGGTTTAGGAAGGCATTCTAACAAGGCCAAAGAAAGACTATGTTAACCCCTTCTTCTGCTTTCATCAAACTAGTCTCAACTCGATTACTTTTTTAGAGATTTCAGTGAGTAGGTACTCAAATAGTTTCATTAATGAGACACTTTATGGTCTATTAACTTTCTTCTTCTGCTTTCATCAAACTAGTCTCAACTCAATTACTTTTTTAGAGATTTCAGTGAGTAGGTACTCAAATATTTCACGAGCGAGGACGTAGAAGAGAGAAGGAGAGAGAGGAATATTATGAGTCACTATGCCCCAACCAAAGTCGCACCTTTTGTATTAAGTTTTAATACATGATACACTTTTTTGAAATATAATAAAAAATTTGTAGCTAAAGAAAAATTAATAGATAAAAGCAAAGTTATATAAGTTATGATGCATTATACACTTTTTTAGAAAGCATAACTTACCACACCCAGGCAATTTGAGGCAAAGGCCTAGGCTCTCCCAAAAATAACAATCTCCAAATTCTACCTATCTCCCATCATTTTCTTTTTCTTCTTTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATGAACATCAAAGACGAAGTCCAACATGGCTTCAACCTCCGAATCACCCAACCCTTGAAAATTAGACTGCCTATCTACCACCAACGTACTCAAATATTTCACGAGCGAGGACGTAGAAGAGAGAAGGAGAGAGAGGAATATTATGAGTCACTATGCCCCAACCAAAGTCGCACCTTTTGTATTAAGTTTTAATACATGATACACTTTTTTGAAATATAATAAAAAATTTGTAGCTAAAGAAAAATTAATAGATAAAAGCAAAGTTATATAAGTTATGATGCATTATACACTTTTTTAGAAAGCATAACTTACCACACCCAGGCAATTTGAGGCAAAGGCCTAGGCTCTCCCAAAAATAACAATCTCCAAATTCTACCTATCTCCCATCATTTTCTTTTTCTTCTTTTTTGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGAACATCAAAGACGAAGTCCAACATGGCTTCAACCTCCGAATCACCCAACCCTTGAAAATTAGACTGCCTATCTACCACCAACGTACTCAAATATTTCACGAGCGAGGACGTAGAAGAGAGAAGGAGAGAGAGGAATATTATGAGTCACTATGCCCCAACCAAAGTCGCACCTTTTGTATTAAGTTTTAA

Protein sequence

MNIKDEVQHGFNLRITQPLKIRLPIYHQRTQIFHERGRRREKEREEYYESLCPNQSRTFCIKF
Homology
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BLAST of Carg26734 vs. NCBI nr
Match: KAG7013819.1 (hypothetical protein SDJN02_23988, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.0 bits (336), Expect = 4.4e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MNIKDEVQHGFNLRITQPLKIRLPIYHQRTQIFHERGRRREKEREEYYESLCPNQSRTFC 60
          MNIKDEVQHGFNLRITQPLKIRLPIYHQRTQIFHERGRRREKEREEYYESLCPNQSRTFC
Sbjct: 1  MNIKDEVQHGFNLRITQPLKIRLPIYHQRTQIFHERGRRREKEREEYYESLCPNQSRTFC 60

Query: 61 IKF 64
          IKF
Sbjct: 61 IKF 63

The following BLAST results are available for this feature:
BLAST of Carg26734 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013819.14.4e-28100.00hypothetical protein SDJN02_23988, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26734 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26734 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26734 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26734-RACarg26734-RAmRNA