Carg26711 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26711
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	agamous-like MADS-box protein AGL62
Location	Carg_Chr17: 3066071 .. 3066396 (+)
RNA-Seq Expression	Carg26711
Synteny	Carg26711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTCTTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACAAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGTCGGTGAGCTTTCTGTGCTTTGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTTGTTTTGGTCATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAGTTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

mRNA sequence

AAAACTCTTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACAAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGTCGGTGAGCTTTCTGTGCTTTGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAGTTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

Coding sequence (CDS)

AAAACTCTTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAGCAGCAAACAAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGTCGGTGAGCTTTCTGTGCTTTGCGGAGCAGAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAGTTTAATCGCGATTTCGCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA

Protein sequence

KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKPAENFVPVTEFNRDFADLVLKFEVAKK

Homology

[Close]

BLAST of Carg26711 vs. NCBI nr
Match: KAG7013790.1 (Agamous-like MADS-box protein AGL61, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 4.8e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKPAENF 60
          KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKPAENF
Sbjct: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKPAENF 60

Query: 61 VPVTEFNRDFADLVLKFEVAKK 83
          VPVTEFNRDFADLVLKFEVAKK
Sbjct: 61 VPVTEFNRDFADLVLKFEVAKK 82

[Close]

BLAST of Carg26711 vs. NCBI nr
Match: KAG7013413.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 74

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  HPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]

BLAST of Carg26711 vs. NCBI nr
Match: XP_023549141.1 (agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 3   KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 62

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 63  HPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 109

[Close]

BLAST of Carg26711 vs. NCBI nr
Match: KAG6574839.1 (Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 74

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  HPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]

BLAST of Carg26711 vs. NCBI nr
Match: XP_023006252.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 74

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  HPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]

BLAST of Carg26711 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.9e-11
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKP 57
           +++GRQKI + K++K+S +QVTFSKRRA LFKK  EL  LCGAE+ II FSP  KP
Sbjct: 60  ESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

[Close]

BLAST of Carg26711 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          K+ GRQKIE+ K++ +S+ QVTFSKRR+ LFKK  EL  LCGAEVAI+ FSP  K
Sbjct: 4  KSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRK 58

[Close]

BLAST of Carg26711 vs. ExPASy Swiss-Prot
Match: Q39295 (Agamous-like MADS-box protein AGL15 OS=Brassica napus OX=3708 GN=AGL15 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-10
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 3  LGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          +GR KIEIK++E  +S+QVTFSKRRA L KK  ELSVLC AEVA+I FS + K
Sbjct: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGK 53

[Close]

BLAST of Carg26711 vs. ExPASy Swiss-Prot
Match: Q38847 (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana OX=3702 GN=AGL15 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-09
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 3  LGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          +GR KIEIK++E  +S+QVTFSKRR+ L KK  ELSVLC AEVA+I FS + K
Sbjct: 1  MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGK 53

[Close]

BLAST of Carg26711 vs. ExPASy Swiss-Prot
Match: O80807 (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-09
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          KTLGR+K+EI K+ K+S+ QVTFSKR+A LFKK  E   LC A++A+I FSP  K
Sbjct: 4  KTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGK 58

[Close]

BLAST of Carg26711 vs. ExPASy TrEMBL
Match: A0A6J1KVC9 (agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.5e-26
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 74

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  HPNVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]

BLAST of Carg26711 vs. ExPASy TrEMBL
Match: A0A6J1H4M6 (agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC111460353 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.5e-26
Identity = 73/107 (68.22%), Postives = 76/107 (71.03%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 15  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 74

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE++VPV EFNRDFADLVL+FE  KK
Sbjct: 75  HPDVDVLLDRYLTGNLSPPKPAESYVPVAEFNRDFADLVLEFEAEKK 121

[Close]

BLAST of Carg26711 vs. ExPASy TrEMBL
Match: A0A5D3D807 (Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001020 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 3   KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 62

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 63  HPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKK 109

[Close]

BLAST of Carg26711 vs. ExPASy TrEMBL
Match: A0A1S3CRI8 (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.3e-25
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKVFCFG 70

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  HPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADFALEFEAEKK 117

[Close]

BLAST of Carg26711 vs. ExPASy TrEMBL
Match: A0A0A0LE01 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 70/107 (65.42%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPND------ 60
           KTLGRQKIEIKKLEKKSSKQVTFSKRRA LFKK GELSVLCGAEVAII FSPND      
Sbjct: 11  KTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFCFG 70

Query: 61  -------------------KPAENFVPVTEFNRDFADLVLKFEVAKK 83
                              KPAE+++PV EFNRDFAD  L+FE  KK
Sbjct: 71  HPDVDVLLDRYLTGNLSPPKPAESYIPVAEFNRDFADCALEFEAEKK 117

[Close]

BLAST of Carg26711 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 1   KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKP 57
           +++GRQKI + K++K+S +QVTFSKRRA LFKK  EL  LCGAE+ II FSP  KP
Sbjct: 60  ESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKP 115

[Close]

BLAST of Carg26711 vs. TAIR 10
Match: AT1G17310.1 (MADS-box transcription factor family protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 2  TLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          T GRQKIEIKK+E+++ +QVTFSKRR  LFKK  ELSVL GA++A+I FS  D+
Sbjct: 46 TRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDR 99

[Close]

BLAST of Carg26711 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  KTLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          K+ GRQKIE+ K++ +S+ QVTFSKRR+ LFKK  EL  LCGAEVAI+ FSP  K
Sbjct: 4  KSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRK 58

[Close]

BLAST of Carg26711 vs. TAIR 10
Match: AT3G66656.1 (AGAMOUS-like 91 )

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-11
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 3  LGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDKP----AE 62
          +GR+KI+++K++  ++KQVTFSKRR  LFKK  EL+ LC AEV I+ FSP +KP      
Sbjct: 1  MGRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKP 60

Query: 63 NFVPVTE-FNRDFAD 73
          NF  + E F  +F +
Sbjct: 61 NFDVIAERFKNEFEE 75

[Close]

BLAST of Carg26711 vs. TAIR 10
Match: AT1G72350.1 (MADS-box transcription factor family protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-11
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 2  TLGRQKIEIKKLEKKSSKQVTFSKRRARLFKKVGELSVLCGAEVAIIGFSPNDK 56
          T GRQKIEIK++  ++ +QVTFSKRR+ LFKK  ELSVLCGA++ II FS  D+
Sbjct: 41 TKGRQKIEIKEIMLETRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDR 94

The following BLAST results are available for this feature:

BLAST of Carg26711 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013790.1	4.8e-35	100.00	Agamous-like MADS-box protein AGL61, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG7013413.1	1.6e-25	68.22	Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023549141.1	1.6e-25	68.22	agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo]	[more]
KAG6574839.1	1.6e-25	68.22	Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_023006252.1	1.6e-25	68.22	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]

BLAST of Carg26711 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4PSU4	3.9e-11	62.50	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
Q9FKK2	1.9e-10	63.64	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
Q39295	5.6e-10	66.04	Agamous-like MADS-box protein AGL15 OS=Brassica napus OX=3708 GN=AGL15 PE=3 SV=1	[more]
Q38847	1.2e-09	64.15	Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana OX=3702 GN=AGL15 PE=...	[more]
O80807	1.6e-09	60.00	Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana OX=3702 GN=AGL23 PE=...	[more]

BLAST of Carg26711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KVC9	7.5e-26	68.22	agamous-like MADS-box protein AGL62 OS=Cucurbita maxima OX=3661 GN=LOC111499040 ...	[more]
A0A6J1H4M6	7.5e-26	68.22	agamous-like MADS-box protein AGL62 OS=Cucurbita moschata OX=3662 GN=LOC11146035...	[more]
A0A5D3D807	8.3e-25	65.42	Agamous-like MADS-box protein AGL62 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3CRI8	8.3e-25	65.42	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103503920 PE=4...	[more]
A0A0A0LE01	1.1e-24	65.42	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G860240 PE...	[more]

BLAST of Carg26711 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24840.1	2.7e-12	62.50	AGAMOUS-like 61	[more]
AT1G17310.1	1.4e-11	64.81	MADS-box transcription factor family protein	[more]
AT5G60440.1	1.4e-11	63.64	AGAMOUS-like 62	[more]
AT3G66656.1	3.0e-11	48.00	AGAMOUS-like 91	[more]
AT1G72350.1	4.0e-11	62.96	MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 25..40 score: 64.85 coord: 5..25 score: 51.12 coord: 40..61 score: 41.15
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 3..62 e-value: 5.9E-24 score: 95.6
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 13..56 e-value: 1.7E-20 score: 72.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 3..55 score: 22.202862
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 15..78 e-value: 2.3E-17 score: 64.5
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 3..60
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 2..55
None	No IPR available	PANTHER	PTHR48019:SF58	SUBFAMILY NOT NAMED	coord: 2..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26711-RA	Carg26711-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity