Carg26703 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26703
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B box-type domain-containing protein
Location	Carg_Chr17: 2965772 .. 2966519 (+)
RNA-Seq Expression	Carg26703
Synteny	Carg26703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTTGTTGTTCATCTTAATTGGATTTGCAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGAAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAATTTTGTTGTTTTTGGTTGGTTGATTTAGTCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAGGTTTAATTTCAAAATCCCCTTTCGATTTTCAATCATCTTCTGTTATGAACGTTGGTTTCGTTTCACAGATTGATTTTCTAATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA

mRNA sequence

AACTTTGTTGTTCATCTTAATTGGATTTGCAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAACTTTGTTGTTCATCTTAATTGGGTTTGAAGAAACAGAGTAATTTTGTTGTTCATCTTAATTGGGTTTGCAGAAACAGAGTAATTTTGTTGTTTTTGGTTGGTTGATTTAGTCTTACACTACGAATAGTGCGAAAGTGGTGTTTCTGAACCAAAGGCCACAGACCAGAAACTTCCGAGGCTCCTCCGGCAACCTCTGCAGCACCTGCGATAGAAGCCTTCAAGATCCTTATCTCTTTTGCTCTCTTTCCTGCAAGATTGATTTTCTAATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA

Coding sequence (CDS)

ATGAAGACGGAAGGTGGCGTTTCGAGGAATCTCTTGGAGTGTAATTTCTCGGCATGGGACGACGGGCTCATGATGACACCAGACTCTGTTCTCGAACTCGGTGGTTCGAACCAAACCTCCTCCGGTTCCGACGGCGGTGGTGTAGAAGGAGGGAGGAGTGTAGTAGTGTCGACGGCAACGACGGAGTTCGTGAAGAAAAAGAGAAGTAGCTTGACGGCGGCGTATAGGGCAGCGTGCCGGCCGGCTTGCTGGCCAGGGACGATTTCCGAGACGTCTGGGAGTTTATTGAGCCGGAGAAAAGGTACCCCACAGCGGGCCCCACTCTATTGA

Protein sequence

MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTATTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY

Homology

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: KAG7013782.1 (hypothetical protein SDJN02_23949 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.8 bits (556), Expect = 2.3e-53
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTAT 60
           MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTAT
Sbjct: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTAT 60

Query: 61  TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 61  TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 109

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_022959264.1 (uncharacterized protein LOC111460295 [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 6.8e-53
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTAT 60
           MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVV STAT
Sbjct: 135 MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVASTAT 194

Query: 61  TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 243

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_023548824.1 (uncharacterized protein LOC111807359 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGV-EGGRSVVVSTA 60
           MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGV EGGRSVV STA
Sbjct: 135 MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEEGGRSVVASTA 194

Query: 61  TTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           TTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 TTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 244

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_023006650.1 (uncharacterized protein LOC111499311 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGV-EGGRSVVVSTA 60
           MKTEGGVSRN+LECNFSAWDDGLMMTPDSVLE GGSNQTSSGSDG GV EGGRSVV STA
Sbjct: 135 MKTEGGVSRNVLECNFSAWDDGLMMTPDSVLEFGGSNQTSSGSDGSGVEEGGRSVVASTA 194

Query: 61  TTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           TT+FVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 TTDFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 244

[Close]

BLAST of Carg26703 vs. NCBI nr
Match: XP_011656872.1 (uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hypothetical protein Csa_005519 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-39
Identity = 90/117 (76.92%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVV 60
           +KT+GG+S++LLECNF       WDDGLMMTPDSVLE  GSN++SSGSDGGG EG    +
Sbjct: 135 VKTQGGISKHLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSNRSSSGSDGGGTEG--KTL 194

Query: 61  VSTATTEFVKKKRSSLT---AAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           VSTATTEFVKKKRSSLT   AAYRAACRP CWPGTISETSGSL+SRRKGTPQRAPLY
Sbjct: 195 VSTATTEFVKKKRSSLTAAAAAYRAACRPVCWPGTISETSGSLMSRRKGTPQRAPLY 249

[Close]

BLAST of Carg26703 vs. ExPASy TrEMBL
Match: A0A6J1H7K0 (uncharacterized protein LOC111460295 OS=Cucurbita moschata OX=3662 GN=LOC111460295 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVVSTAT 60
           MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVV STAT
Sbjct: 135 MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVVASTAT 194

Query: 61  TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 TEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 243

[Close]

BLAST of Carg26703 vs. ExPASy TrEMBL
Match: A0A6J1L0Q7 (uncharacterized protein LOC111499311 OS=Cucurbita maxima OX=3661 GN=LOC111499311 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.8e-50
Identity = 104/110 (94.55%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNFSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGV-EGGRSVVVSTA 60
           MKTEGGVSRN+LECNFSAWDDGLMMTPDSVLE GGSNQTSSGSDG GV EGGRSVV STA
Sbjct: 135 MKTEGGVSRNVLECNFSAWDDGLMMTPDSVLEFGGSNQTSSGSDGSGVEEGGRSVVASTA 194

Query: 61  TTEFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           TT+FVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY
Sbjct: 195 TTDFVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 244

[Close]

BLAST of Carg26703 vs. ExPASy TrEMBL
Match: A0A0A0KCM1 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 90/117 (76.92%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVV 60
           +KT+GG+S++LLECNF       WDDGLMMTPDSVLE  GSN++SSGSDGGG EG    +
Sbjct: 135 VKTQGGISKHLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSNRSSSGSDGGGTEG--KTL 194

Query: 61  VSTATTEFVKKKRSSLT---AAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           VSTATTEFVKKKRSSLT   AAYRAACRP CWPGTISETSGSL+SRRKGTPQRAPLY
Sbjct: 195 VSTATTEFVKKKRSSLTAAAAAYRAACRPVCWPGTISETSGSLMSRRKGTPQRAPLY 249

[Close]

BLAST of Carg26703 vs. ExPASy TrEMBL
Match: A0A1S3C8E3 (uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-39
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVV 60
           +KT+GG+S+ LLECNF       WDDGLMMTPDSVLE  GS +TSSGSDGGG EG    +
Sbjct: 135 VKTQGGISKYLLECNFLPLPEPGWDDGLMMTPDSVLEPVGSTRTSSGSDGGGTEG--KTL 194

Query: 61  VSTATTEFVKKKRSSLT-AAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
           VSTATTEFVKKKRSSLT AAYRAACRP CWPGTISETSGSL+SRRKGTPQRAPLY
Sbjct: 195 VSTATTEFVKKKRSSLTAAAYRAACRPVCWPGTISETSGSLMSRRKGTPQRAPLY 247

[Close]

BLAST of Carg26703 vs. ExPASy TrEMBL
Match: A0A6J1HHL3 (uncharacterized protein LOC111464390 OS=Cucurbita moschata OX=3662 GN=LOC111464390 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.2e-32
Identity = 79/117 (67.52%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 1   MKTEGGVSRNLLECNF-----SAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEGGRSVV 60
           +K +GGVSR+LLECNF       WDDG++MTPDSVLE  GS +TSS SDGG V   R+ +
Sbjct: 135 VKAQGGVSRHLLECNFLPLPEPVWDDGMIMTPDSVLEPAGSTRTSSSSDGGRVLEMRTTI 194

Query: 61  VSTATTEFVKKKRSSLT---AAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
            STATT+FVKKKRSSLT   AAYR  CRPAC   T+SETSGSL+SRRK TPQRAPLY
Sbjct: 195 ASTATTDFVKKKRSSLTAAAAAYRTTCRPACCSVTVSETSGSLMSRRKSTPQRAPLY 251

[Close]

BLAST of Carg26703 vs. TAIR 10
Match: AT3G60670.1 (PLATZ transcription factor family protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-09
Identity = 46/107 (42.99%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 6   GVSRNLLECN-FSAWDDGLMMTPDSVLELGGSNQTSSGSDGGGVEG--GRSVVVSTATTE 65
           G+S  L  CN     D+    TP S LE  GSN+TSS S G   E       +  TATTE
Sbjct: 141 GLSGFLRVCNVLDLTDEVTTTTPSSTLEPTGSNRTSSESSGNEGEDMFWCQALACTATTE 200

Query: 66  FVKKKRSSLTAAYRAACRPACWPGTISETSGSLLSRRKGTPQRAPLY 110
            V+KKRSSL+   R          T  E   + L+RRK  PQRAPLY
Sbjct: 201 IVRKKRSSLSTTCRRVTEVVSTTNT--EAPVNFLNRRKNPPQRAPLY 245

The following BLAST results are available for this feature:

BLAST of Carg26703 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013782.1	2.3e-53	100.00	hypothetical protein SDJN02_23949 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022959264.1	6.8e-53	99.08	uncharacterized protein LOC111460295 [Cucurbita moschata]	[more]
XP_023548824.1	1.7e-51	98.18	uncharacterized protein LOC111807359 [Cucurbita pepo subsp. pepo]	[more]
XP_023006650.1	1.2e-49	94.55	uncharacterized protein LOC111499311 [Cucurbita maxima]	[more]
XP_011656872.1	4.3e-39	76.92	uncharacterized protein LOC101214475 [Cucumis sativus] >KGN46574.1 hypothetical ...	[more]

BLAST of Carg26703 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H7K0	3.3e-53	99.08	uncharacterized protein LOC111460295 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]
A0A6J1L0Q7	5.8e-50	94.55	uncharacterized protein LOC111499311 OS=Cucurbita maxima OX=3661 GN=LOC111499311...	[more]
A0A0A0KCM1	2.1e-39	76.92	B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G109690 ...	[more]
A0A1S3C8E3	4.6e-39	78.26	uncharacterized protein LOC103497663 OS=Cucumis melo OX=3656 GN=LOC103497663 PE=...	[more]
A0A6J1HHL3	4.2e-32	67.52	uncharacterized protein LOC111464390 OS=Cucurbita moschata OX=3662 GN=LOC1114643...	[more]

BLAST of Carg26703 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60670.1	2.9e-09	42.99	PLATZ transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26703-RA	Carg26703-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding