Carg26671 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26671
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein TIC 20
Location	Carg_Chr17: 3203600 .. 3206397 (-)
RNA-Seq Expression	Carg26671
Synteny	Carg26671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCCCCTCTTTTCTTCTGCCCTTAGGTTTATCTTCAGTTGCTACCCATTTTCGCAGAAATCCATCACCAGCCAGTCTCCTTCTTCGACGTTAGCAGCTGGTCCTCCGACCAGTGACCCAGCCGCCGGCGACGAACTCGAGAAGTTTTCTTCTCTGGCGCGAGCACCTATCACGAGCCGCCACGCACAGGTCAGCAGTTGGTCCTTCGACGAACGCACGTCCACTGATTTCTCTTCCCAGGTGACATTCGGAAGCAACCCACAACCCGAATGCCTCAAATCGGATTCCCCATAACCTGTAAAAGTGAGATTTAGTTCGAACCTGTTCGAACACATTCCAGCAAAGACTAAAGCCTTGGATAGTGGGTGGGCTCTTTACGAGTTTACTAAGTGTATTAATTCTGATTCTAACTATTGGAAGTTTTTTGTATATAGGTTCGGACTGCTCGATTCAAGTTTAAGGTTGACATTGGGTAAGAAATAGCTGTCGACTAAGGTTTAAAACGGAACTTTAACCTTGAAATCTTGTCTACAATTTCTTATAGTAGCGCTTTATAACGTAAAGTAGTTCTTACTTGTGAAGTCTGTTCCTTGTTATTTTTATGATCTATAAAATTTAATTTGTATGCGATTATAAACTGTTTTGGGTTCTGGTAAGTATAATTATGCTGTGTTGTTGAGTTACATCCTTGTGATGATGGATATGTTGGATGTTGAAATTTTCTGAAATTATATGATAGTATGATGCTTATGTCGGAATCTGGTTCATGTTGTTAATTTTCAGAAATATGGCTCCGAAAGCATGTTAGAATGTGCATACATGGGAATTTGTGAGACTGATTGGTGAGGGAGGGTTAGAAGACCTTAAAAGTGAGGACAGTGTCTGGGCTTTGGATATAAATGATTGACGGTTGGTATTGTGTTATGGAAAGTAAGTGAATATCAGGCCTCAAGTATGAATGGTTAAGGATTGGTGTGTCACTATCGGGTGTCAAGGCCTGTAGTATATATGGTCGGGAGTCGACATGCCAATATTGGATAAGAGAAGTATCAAGGCCTTGGGTATAAACGCTCAAGAGCCGGTGTGATGAGCTTTTATACAAGCATTGGGGCCTTGGGTGTAAATGGTCGAGGGTTAAACGTTGCGTTTTGTAGAGAAGGGTTGAGGATTTTGGTATAAATGATCAGGAGTCAATGTGTCTTGCAAGAGTAAATCTCAAAGATGTGGAAAAGATTGAATGGAGTTAGAAAGAGCTAGAAAGAGCTAGAAAGAGCTATGAGAACTCAGTGATGTTCGAGAGTTTGTTAGAACTTGAGTTCGAGGATAGGCGTGCACGACATGAATATTGTGGATGATATGATTATGATTCATGAGCTGAATATGTCACATATATTTACTTGTTTTCATATTTGTTGTGAGAGCATGATGTGATGTATGTTGTATGCTGTTGGTAAAAATTGATACAACTTGCATTATAAATAGACCAATATAAATAAACCATGGGTGAAAGTATTTAAAAGTTCTTTCTCACTGAGTCAAGTATTACTATTATCAAGTTTGTTCAAGAAAGTAGAGCCATTTGTTAGATAAGAGAGTTACTAAGATGAGAATTGGGGATAAGAACTTTTCTAATCAGAACGATCCCTAGTTCATTTTTACAATGAACGTTTTCAATATCGATGTTGATGAAAATACCAAAAAAAATTGTAAATAAAGAATTCAAAAAAGAAAATTAAATTGGACTTAAGAACATAGGCATTGTTCCCTTTGTTTTTCATGCGGCTTTGTTCCTTACACTCTGCAATGATGTTGCTTAAACAGGTAACTTCGATATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATCCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGCATACGAAGCCTTTCACAATCTTTATTCATCTTTTATTTGATCTTTTTATTGAAACAACTATAACTGTGGTGGAGACGTAAATGTAAAGAAATTACTGTCTGACTTTTGTGACAATTGCTTCTTGAAGTAATCCATTATTTTTCAAATGTAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACCGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAA

mRNA sequence

CTATCCCCTCTTTTCTTCTGCCCTTAGGTTTATCTTCAGTTGCTACCCATTTTCGCAGAAATCCATCACCAGCCAGTCTCCTTCTTCGACGTTAGCAGCTGGTCCTCCGACCAGTGACCCAGCCGCCGGCGACGAACTCGAGAAGTTTTCTTCTCTGGCGCGAGCACCTATCACGAGCCGCCACGCACAGGTCAGCAGTTGGTCCTTCGACGAACGCACGTCCACTGATTTCTCTTCCCAGGTGACATTCGGAAGCAACCCACAACCCGAATGCCTCAAATCGGATTCCCCATAACCTGTAAAAGTTCGGACTGCTCGATTCAAGTTTAAGGTTGACATTGGGTAACTTCGATATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATCCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACCGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAA

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCCACTGGCTTCTTCTTCTCAAATTCCAGGTTGTCTATCCCTAACCGTTCTGCGATCTCACGTAGTCCTGATTGCAGTATGCATGCTGCTGCTAGCATTAGAAGTTCAAGGGAACCTCATTTAGAGCATCAAACATGTCGCTATAGAGGTGTCTTTCCCTTAAAACTAGGTGCTGGATCTTCCCATTTCTTAAGCGGGGATCTAGGTGGCTTGCTACATACAATCCCAAGGTTACCAAGGAAAAGAAATGTTGGCATGACACCACGGGCAGCCAAAGATATCCCTACGAGTTATCGTTTCCCTCCGATGACCACTAAACCAAAATGGTGGTGGAGGACATTGGCATGCTTACCCTATCTAATGCCCTTTCACGAAACTTGGATGTACTCTGAAACCGCGTACCACCTACACCCGTTCCTGGAGGACTTCGAATTCTTGACATATCCATTTCTCGAAGCCCTTGGACAACTACCAACTTGGTTCTTGATTGCATATTTCTTTATTGCCTATCTAGGAATTGTAAGACGTAAGGAATGGCCACACTTCTTTAGATTTCACGTAGTCATGGGCATGTTGTTGGAGATTGCCCTGCAAGTGATTGGTACAGTGAGCCGTTGGATGCCCCTTGCAGTCTATTGGGGTAAAGTAGGGATGCACTTTTGGACAGCCGTATCGTTCGCTTACCTATTCACGGTTTTGGAAGCCGTTCGCTGTGCCCTTGCAGGCATGTATGCCGATATCCCTTTCTTCTGTGATGCAGCCTACATCCAAATTCCATACGATTAA

Protein sequence

MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD

Homology

[Close]

BLAST of Carg26671 vs. NCBI nr
Match: XP_023548580.1 (protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548581.1 protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548582.1 protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548584.1 protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7013802.1 Protein TIC 20-I, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 564.3 bits (1453), Expect = 5.6e-157
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Carg26671 vs. NCBI nr
Match: KAG6575237.1 (Protein TIC 20-I, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 564.3 bits (1453), Expect = 5.6e-157
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 413 MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 472

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 473 PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 532

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 533 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 592

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 593 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 652

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 653 LEAVRCALAGMYADIPFFCDAAYIQIPYD 681

[Close]

BLAST of Carg26671 vs. NCBI nr
Match: XP_023006630.1 (protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006631.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006632.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006633.1 protein TIC 20-I, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 562.0 bits (1447), Expect = 2.8e-156
Identity = 268/269 (99.63%), Postives = 268/269 (99.63%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSH LSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHLLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Carg26671 vs. NCBI nr
Match: XP_022959308.1 (protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959309.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959310.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959311.1 protein TIC 20-I, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 558.9 bits (1439), Expect = 2.4e-155
Identity = 267/269 (99.26%), Postives = 267/269 (99.26%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRS DCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSSDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNV MTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVSMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Carg26671 vs. NCBI nr
Match: XP_038875339.1 (protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875341.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875342.1 protein TIC 20-I, chloroplastic [Benincasa hispida])

HSP 1 Score: 480.3 bits (1235), Expect = 1.1e-131
Identity = 227/270 (84.07%), Postives = 248/270 (91.85%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG FFSNS+LSIP RSAISRSP CSM   ASIRSS EP LEHQTC YRG+ 
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPGRSAISRSPHCSMQ-TASIRSSWEPRLEHQTCYYRGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGM-TPRAAKDIPTSYRFPPMTTKPKWWW 120
           PLKL A SS  LSGDLGGLLH IPRLPR++ +GM TP+AAKD+PTS+RFPPMTTKPKWWW
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHMIPRLPRQKKIGMTTPQAAKDVPTSFRFPPMTTKPKWWW 120

Query: 121 RTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYL 180
           RTLACLPYLMP HETWMY+ETAYHLHPFLE+FE  TYPFL A+G+LP+WFL+AYFF+AYL
Sbjct: 121 RTLACLPYLMPLHETWMYAETAYHLHPFLEEFELFTYPFLGAIGRLPSWFLMAYFFVAYL 180

Query: 181 GIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFT 240
           G+VRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK+GMHFWTAV+FAYLFT
Sbjct: 181 GVVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFT 240

Query: 241 VLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           VLE++RCALAGMYAD+PF CDAAYIQIPYD
Sbjct: 241 VLESIRCALAGMYADVPFVCDAAYIQIPYD 269

[Close]

BLAST of Carg26671 vs. ExPASy Swiss-Prot
Match: Q8GZ79 (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 2.3e-100
Identity = 170/213 (79.81%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LFTVLE++RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Carg26671 vs. ExPASy Swiss-Prot
Match: Q9ZST8 (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.0e-80
Identity = 145/233 (62.23%), Postives = 172/233 (73.82%), Query Frame = 0


Query: 37  AAASIRSSREPHLEHQTCRYRGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTP 96
           A +SIRS     LE++    RG+    + A SS  LSG    L  TIP LP       TP
Sbjct: 25  AVSSIRSFWGHSLENKP---RGMTFTDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTP 84

Query: 97  RAAKDIPTSYRFPPMTTKPKWWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTY 156
           RA KD  + +RFPPMT KP+WWWRTL+C+PYL+PFH+ WMY+ TAYHLHPF+  F+ +TY
Sbjct: 85  RATKD-SSGFRFPPMTKKPRWWWRTLSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTY 144

Query: 157 PFLEALGQLPTWFLIAYFFIAYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMP 216
           PFL A+G LP W LIAYF IAYL IVRRKEWPHFFRFHV +GML+EIALQV G VSRWMP
Sbjct: 145 PFLMAIGTLPRWSLIAYFLIAYLTIVRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMP 204

Query: 217 LAVYWGKVGMHFWTAVSFAYLFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
            + YWGK+GMHFWT   F +LFT +E +RCAL GMYAD+PF CDAAYIQIP++
Sbjct: 205 RSFYWGKLGMHFWTTAFFVFLFTTIECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of Carg26671 vs. ExPASy Swiss-Prot
Match: Q9ZQZ9 (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-37
Identity = 98/260 (37.69%), Postives = 141/260 (54.23%), Query Frame = 0


Query: 8   TPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAG 67
           +P    F N R+  PN  + ++     +  +AS  S R P  E               A 
Sbjct: 23  SPISKKFVNPRVFFPNVDSSAK-----LRLSASSISRRCPR-EIAPLSATASVDFAAAAT 82

Query: 68  SSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPY 127
           SS+ L  +  GL    P L R R      R AKD     + P +  +P+WWWRTLAC+PY
Sbjct: 83  SSNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPY 142

Query: 128 LMPFHETWMYSETAYHLHPFLEDFEF---LTYPFLEALGQLPTWFLIAYFFIAYLGIVRR 187
           L+    +   S+  +++ PFLE  +    + Y    A+ + PTWF + Y ++ Y+ +V+ 
Sbjct: 143 LI----SLQISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKN 202

Query: 188 KEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAV 247
           KE PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE +
Sbjct: 203 KELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECI 262

Query: 248 RCALAGMYADIPFFCDAAYI 265
           RCALAG+YA IPF  DAA I
Sbjct: 263 RCALAGVYAQIPFMTDAASI 270

[Close]

BLAST of Carg26671 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-04
Identity = 41/156 (26.28%), Postives = 72/156 (46.15%), Query Frame = 0


Query: 120 RTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYL 179
           R  + L Y++P  + +M+        P L+       P L+   Q P    I  F + ++
Sbjct: 12  RFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFI-IFIVLFM 71

Query: 180 GIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYL-- 239
            +VR     HF RF+ +  +L+ I L + G +  ++   V+    G+   T  +FA+L  
Sbjct: 72  AVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVF--GQGLVTETLYNFAFLGA 131

Query: 240 -----FTVLEAVRCALAGMYADIPFFCDAAYIQIPY 269
                F ++++V     G YA+IP   DAAY Q+ +
Sbjct: 132 LACGFFGIVQSV----LGRYAEIPTISDAAYSQVRF 160

[Close]

BLAST of Carg26671 vs. ExPASy TrEMBL
Match: A0A6J1KYA1 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111499301 PE=3 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.3e-156
Identity = 268/269 (99.63%), Postives = 268/269 (99.63%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSH LSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHLLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Carg26671 vs. ExPASy TrEMBL
Match: A0A6J1H4H9 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111460323 PE=3 SV=1)

HSP 1 Score: 558.9 bits (1439), Expect = 1.1e-155
Identity = 267/269 (99.26%), Postives = 267/269 (99.26%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTGFFFSNSRLSIPNRSAISRS DCSMHAAASIRSSREPHLEHQTCRYRGVF
Sbjct: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSSDCSMHAAASIRSSREPHLEHQTCRYRGVF 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNV MTPRAAKDIPTSYRFPPMTTKPKWWWR
Sbjct: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVSMTPRAAKDIPTSYRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG
Sbjct: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV
Sbjct: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LEAVRCALAGMYADIPFFCDAAYIQIPYD
Sbjct: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 269

[Close]

BLAST of Carg26671 vs. ExPASy TrEMBL
Match: A0A6J1DDV0 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.1e-129
Identity = 222/269 (82.53%), Postives = 242/269 (89.96%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG+ FSNSR  IP+RS  SR+P CSM   A IRSS EP LEHQTC  +G+ 
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQ-TARIRSSWEPRLEHQTCFSKGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS  LSGDLGGLLHTIPRLPR++ +GMTP+A+KD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMP HETWMY+ETAYHLHPFLEDFEF TYPFL A+G+LP+WFL+AYFF+AYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           +VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAVSFAYLFTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 LECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Carg26671 vs. ExPASy TrEMBL
Match: A0A6J1DBI9 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.7e-128
Identity = 222/270 (82.22%), Postives = 242/270 (89.63%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYR-GV 60
           MILNGCTTPTG+ FSNSR  IP+RS  SR+P CSM   A IRSS EP LEHQTC  + G+
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQ-TARIRSSWEPRLEHQTCFSKVGL 60

Query: 61  FPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWW 120
            PLKL A SS  LSGDLGGLLHTIPRLPR++ +GMTP+A+KD+PTS+RFPPMTTKPKWWW
Sbjct: 61  LPLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWW 120

Query: 121 RTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYL 180
           RTLACLPYLMP HETWMY+ETAYHLHPFLEDFEF TYPFL A+G+LP+WFL+AYFF+AYL
Sbjct: 121 RTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYL 180

Query: 181 GIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFT 240
           G+VRRKEWPHF RFHVVMGMLLEIALQVIGTVSRWMPLAVYWGK GMHFWTAVSFAYLFT
Sbjct: 181 GVVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFT 240

Query: 241 VLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           VLE +RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 241 VLECIRCALAGMYADIPFICDAAYIQIPYD 269

[Close]

BLAST of Carg26671 vs. ExPASy TrEMBL
Match: A0A5A7TDM5 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003090 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.5e-128
Identity = 216/269 (80.30%), Postives = 244/269 (90.71%), Query Frame = 0


Query: 1   MILNGCTTPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVF 60
           MILNGCTTPTG FFSNS+LSIP+RS+I R+P CS    ASIRSS EPHL+HQTC Y G+ 
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQ-TASIRSSWEPHLKHQTCYYGGLL 60

Query: 61  PLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKL A SS  LSGDLGGLL TIPRLP K+N+ MTPRA+KD+PTSYR+PPMTTKPKWWWR
Sbjct: 61  PLKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWR 120

Query: 121 TLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFIAYLG 180
           TLACLPYLMP HETWMY ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFLIAYFF+AYLG
Sbjct: 121 TLACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTV 240
           +VRRKEWPHF RFHVVMGML+EI+LQVIGT+SRW+P++VYWGK+GMHFWTAV FAY+FTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTV 240

Query: 241 LEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LE +RCALAGMYAD+PF C+AAYIQIP+D
Sbjct: 241 LECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Carg26671 vs. TAIR 10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20 )

HSP 1 Score: 366.7 bits (940), Expect = 1.6e-101
Identity = 170/213 (79.81%), Postives = 190/213 (89.20%), Query Frame = 0


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALAGMYADIPFFCDAAYIQIPYD 270
           LFTVLE++RCALAGMYADIPF CDAAYIQIPYD
Sbjct: 242 LFTVLESIRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Carg26671 vs. TAIR 10
Match: AT1G04945.3 (HIT-type Zinc finger family protein )

HSP 1 Score: 326.2 bits (835), Expect = 2.4e-89
Identity = 151/193 (78.24%), Postives = 171/193 (88.60%), Query Frame = 0


Query: 57  RGVFPLKLGAGSSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPK 116
           RGV    L A SS  L+G+ G L  T+P LP +R   +TPRA+KD+P+S+RFPPMT KP+
Sbjct: 62  RGVPLSYLSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQ 121

Query: 117 WWWRTLACLPYLMPFHETWMYSETAYHLHPFLEDFEFLTYPFLEALGQLPTWFLIAYFFI 176
           WWWRTLACLPYLMP HETWMY+ETAYHLHPFLEDFEFLTYPFL A+G+LP+WFL+AYFF+
Sbjct: 122 WWWRTLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFV 181

Query: 177 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAY 236
           AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVS+WMPL VYWGK GMHFWTAV+FAY
Sbjct: 182 AYLGIVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAY 241

Query: 237 LFTVLEAVRCALA 250
           LFTVLE++RCALA
Sbjct: 242 LFTVLESIRCALA 254

[Close]

BLAST of Carg26671 vs. TAIR 10
Match: AT4G03320.1 (translocon at the inner envelope membrane of chloroplasts 20-IV )

HSP 1 Score: 158.3 bits (399), Expect = 8.6e-39
Identity = 98/260 (37.69%), Postives = 141/260 (54.23%), Query Frame = 0


Query: 8   TPTGFFFSNSRLSIPNRSAISRSPDCSMHAAASIRSSREPHLEHQTCRYRGVFPLKLGAG 67
           +P    F N R+  PN  + ++     +  +AS  S R P  E               A 
Sbjct: 23  SPISKKFVNPRVFFPNVDSSAK-----LRLSASSISRRCPR-EIAPLSATASVDFAAAAT 82

Query: 68  SSHFLSGDLGGLLHTIPRLPRKRNVGMTPRAAKDIPTSYRFPPMTTKPKWWWRTLACLPY 127
           SS+ L  +  GL    P L R R      R AKD     + P +  +P+WWWRTLAC+PY
Sbjct: 83  SSNQLFAN--GLPPLAPGLRRHRRPIEPARVAKDDFFKIKLPKIAERPEWWWRTLACVPY 142

Query: 128 LMPFHETWMYSETAYHLHPFLEDFEF---LTYPFLEALGQLPTWFLIAYFFIAYLGIVRR 187
           L+    +   S+  +++ PFLE  +    + Y    A+ + PTWF + Y ++ Y+ +V+ 
Sbjct: 143 LI----SLQISDVGFYVQPFLEKHDAIGDMIYFIPGAINRWPTWFFMVYCYLGYMWVVKN 202

Query: 188 KEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKVGMHFWTAVSFAYLFTVLEAV 247
           KE PH+ RFH++MGMLLE ALQVI   S + PL  + G+ GM++W A+ F Y+  +LE +
Sbjct: 203 KELPHYLRFHMMMGMLLETALQVIWCTSNFFPLIHFKGRFGMYYWMAIGFTYICLLLECI 262

Query: 248 RCALAGMYADIPFFCDAAYI 265
           RCALAG+YA IPF  DAA I
Sbjct: 263 RCALAGVYAQIPFMTDAASI 270

The following BLAST results are available for this feature:

BLAST of Carg26671 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548580.1	5.6e-157	100.00	protein TIC 20-I, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023548581....	[more]
KAG6575237.1	5.6e-157	100.00	Protein TIC 20-I, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023006630.1	2.8e-156	99.63	protein TIC 20-I, chloroplastic-like [Cucurbita maxima] >XP_023006631.1 protein ...	[more]
XP_022959308.1	2.4e-155	99.26	protein TIC 20-I, chloroplastic-like [Cucurbita moschata] >XP_022959309.1 protei...	[more]
XP_038875339.1	1.1e-131	84.07	protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC ...	[more]

BLAST of Carg26671 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GZ79	2.3e-100	79.81	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]
Q9ZST8	2.0e-80	62.23	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]
Q9ZQZ9	1.2e-37	37.69	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=...	[more]
P73387	1.8e-04	26.28	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]

BLAST of Carg26671 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYA1	1.3e-156	99.63	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111499301 PE=3 SV=1	[more]
A0A6J1H4H9	1.1e-155	99.26	Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111460323 PE=3 SV=1	[more]
A0A6J1DDV0	1.1e-129	82.53	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]
A0A6J1DBI9	2.7e-128	82.22	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]
A0A5A7TDM5	3.5e-128	80.30	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00309...	[more]

BLAST of Carg26671 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04940.1	1.6e-101	79.81	translocon at the inner envelope membrane of chloroplasts 20	[more]
AT1G04945.3	2.4e-89	78.24	HIT-type Zinc finger family protein	[more]
AT4G03320.1	8.6e-39	37.69	translocon at the inner envelope membrane of chloroplasts 20-IV	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 90..262 e-value: 1.3E-68 score: 230.4
IPR005691	Chloroplast protein import component Tic20	TIGRFAM	TIGR00994	TIGR00994	coord: 1..269 e-value: 9.0E-120 score: 397.4
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 24..269
None	No IPR available	PANTHER	PTHR33510:SF14	SUBFAMILY NOT NAMED	coord: 24..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26671-RA	Carg26671-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane