Carg26666 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26666
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Structural constituent of nuclear pore isoform 1
Location	Carg_Chr17: 3154106 .. 3156010 (+)
RNA-Seq Expression	Carg26666
Synteny	Carg26666

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTCTTCGATGGCTTTCAAATCGCGTCCTGTAGTTTCATCCACCTGCAACAACTGCGGTTGCGACACTTGCAAGAGCTTCTTCTGTGGAAGAGAAATCCAGAGTTTAGATACCAAAGCTGGGAAATCTCTTCACAAATTTGATTTAGGACCTGTTCCATCGCGTGCCGAAGTTGATGCTGCAGTTACTGCGCTTCAGAGGTGAGTTTCCGTAACACTTGATTTTGTATTTTTGGTTTCTGTTGTGTGAATTGTGTAGGGCTTTTTTTTCTTGTGGATTTGGTGTATATTATAGGAAGAGATGAAATCTGGACTAGAATCGTTGATTTCTTGATATATTCGCACACACATGGATGCATAAAGCTCCTTCAATTTTCCTCTGCCAATTTGTATCCCTCAGTTAATCAAAAGCAAGATGGAAGATTCCAAATTAGTTACTCCTCTTCATATTCCCTTTGACAGAGGCAGAGCCTGATGTTTTCTTGCTTTAGGGATAGCCAAAATTTTACAACTCTTATATATACACACACACACACATATGCCAACCCCACAGCCTGAACTTTGGAGACATCAAGGGTTTTTCTTATGAAGCTCATTTGAAATCAGTCTAATGGGCAAATTACACCCTTCCTTCTCCCTTTCTGGCTGTGCCATGCTTCTTGAAACCAACAAGTCAGTTGGGGTCACTGGGCCCTGAAGGGGGTGGATTGTGAGGTCCCACATTGGTTGAGGAGGAGAACGAAACATTCTTTATAAGAGTGTAGTAACCTCTCTCTAGCAGACGCGTTTTAAAAATCTTGAAGGGAAGCCTAAAAGAGAAAGTCTAAAGAGGACAATATCTCTCTGTCTTTCATGTGCTTGCAAACTCTTTTATGAAACAATTTCATTGATGGTAAAGAACCCCACTGCAAAGAGTTACAAAAAGACTCTACAATTGGGTAAAATGAGTATCTCTCAATTTGGATAAAAGAGATGAGAAACTATATAAACGAAAGGAGAGTACATTCACTCATTGTGTAACGGCCCAAGCCCACCGCTAGCAGATATTATTCTCTTTGGGCTTTTCCTTTCGGGCTTCTCCTCAAGGCTTTAAAACGTGTATGTTAGGGGAAGGTTTCCACACTCTCATAAAGGGTGTTTCGTCTCCTTCCCAACCAAAAAAACCAATCAAAAGTGAGTTACTTATATTTGAAAATTCTTTGATTCCCTTCTTGCCAAGTTACCCAAAGTAACACCCTAGTAAAGCGCACCCACAAGACTGTTTTTCCTTTTGATGTTATATGAAGCTTTCAGTTTACCATTTTTACCTCATTCTTGAATTTAGAATTTCTTGATTAAATTTGTTCATAAGAAATTATGGGCACGATAAAAAGTTGTTATGGAGTTGCAATCTTTATCAGTTTGCTGCAGGAATATTTTTCAATTGAATCGCTGTCAAAATGGCTTCAGCCGCTGGTGAACTCCTACGATTCAAGCATTTTGCATTCTCGTGGCTATCAATTACTTTGCAAAGGTTTTCAATGGCTGCTAACAGATCCTACTTTGAAGGTACAAATCAGGGATGCCTTGCCTCTTTAATAATGACTATTTGTTTATCTCAACAAGTTCTTTTATTCATCTTTTTTGGTCACAGAAACAAAACTTCCTTTGACAATGAAAGCTTACAACATAAATAGCATCTAATAAACAAAATTTTGATACATCTCAAAAACAACCCAAAAGTTCAACAAAATAGTCAAGAGTTATAGAATAACTTAGAAACAAACATCAACACAGACAATGAAACTTGGCCAAGTCCATGAACTTTCTCTAATCTCTGAACTTTTCATTATGATTCCTATTATTTCTTTCTAACCAAACTGTCA

mRNA sequence

CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTCTTCGATGGCTTTCAAATCGCGTCCTGTAGTTTCATCCACCTGCAACAACTGCGGTTGCGACACTTGCAAGAGCTTCTTCTGTGGAAGAGAAATCCAGAGTTTAGATACCAAAGCTGGGAAATCTCTTCACAAATTTGATTTAGGACCTGTTCCATCGCGTGCCGAAGTTGATGCTGCAGTTACTGCGCTTCAGAGTTTGCTGCAGGAATATTTTTCAATTGAATCGCTGTCAAAATGGCTTCAGCCGCTGGTGAACTCCTACGATTCAAGCATTTTGCATTCTCGTGGCTATCAATTACTTTGCAAAGGTTTTCAATGGCTGCTAACAGATCCTACTTTGAAGGTACAAATCAGGGATGCCTTGCCTCTTTAATAATGACTATTTGTTTATCTCAACAAGTTCTTTTATTCATCTTTTTTGGTCACAGAAACAAAACTTCCTTTGACAATGAAAGCTTACAACATAAATAGCATCTAATAAACAAAATTTTGATACATCTCAAAAACAACCCAAAAGTTCAACAAAATAGTCAAGAGTTATAGAATAACTTAGAAACAAACATCAACACAGACAATGAAACTTGGCCAAGTCCATGAACTTTCTCTAATCTCTGAACTTTTCATTATGATTCCTATTATTTCTTTCTAACCAAACTGTCA

Coding sequence (CDS)

ATGGCTTTCAAATCGCGTCCTGTAGTTTCATCCACCTGCAACAACTGCGGTTGCGACACTTGCAAGAGCTTCTTCTGTGGAAGAGAAATCCAGAGTTTAGATACCAAAGCTGGGAAATCTCTTCACAAATTTGATTTAGGACCTGTTCCATCGCGTGCCGAAGTTGATGCTGCAGTTACTGCGCTTCAGAGTTTGCTGCAGGAATATTTTTCAATTGAATCGCTGTCAAAATGGCTTCAGCCGCTGGTGAACTCCTACGATTCAAGCATTTTGCATTCTCGTGGCTATCAATTACTTTGCAAAGGTTTTCAATGGCTGCTAACAGATCCTACTTTGAAGGTACAAATCAGGGATGCCTTGCCTCTTTAA

Protein sequence

MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLKVQIRDALPL

Homology

[Close]

BLAST of Carg26666 vs. NCBI nr
Match: KAG7013797.1 (hypothetical protein SDJN02_23964 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253.8 bits (647), Expect = 7.4e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60
           MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT
Sbjct: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60

Query: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLKVQIRDAL 120
           ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLKVQIRDAL
Sbjct: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLKVQIRDAL 120

Query: 121 PL 123
           PL
Sbjct: 121 PL 122

[Close]

BLAST of Carg26666 vs. NCBI nr
Match: KAG6575228.1 (hypothetical protein SDJN03_25867, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575233.1 hypothetical protein SDJN03_25872, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60
           MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT
Sbjct: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60

Query: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
           ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK
Sbjct: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 113

[Close]

BLAST of Carg26666 vs. NCBI nr
Match: XP_022959467.1 (uncharacterized protein LOC111460433 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 4.6e-58
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60
           MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT
Sbjct: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60

Query: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
           ALQSLLQEYFS ESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK
Sbjct: 61  ALQSLLQEYFSTESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 113

[Close]

BLAST of Carg26666 vs. NCBI nr
Match: XP_023549361.1 (uncharacterized protein LOC111807735 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 8.2e-55
Identity = 108/113 (95.58%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60
           MAFKS PVVSSTCNNCGCDTCKS FCG EIQSLDTKA KSLHKFDLGPVPSRAEVDAAVT
Sbjct: 17  MAFKSPPVVSSTCNNCGCDTCKSCFCGTEIQSLDTKAPKSLHKFDLGPVPSRAEVDAAVT 76

Query: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
           ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDP+LK
Sbjct: 77  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPSLK 129

[Close]

BLAST of Carg26666 vs. NCBI nr
Match: XP_023006653.1 (uncharacterized protein LOC111499314 [Cucurbita maxima])

HSP 1 Score: 217.2 bits (552), Expect = 7.6e-53
Identity = 106/114 (92.98%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAFKSRPVV-SSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAV 60
           MAFKS PVV SSTC+NCGCDTCKS FCGREIQSLDTKAGKSLHKFDLGPVPSR+EVDAAV
Sbjct: 1   MAFKSPPVVSSSTCDNCGCDTCKSLFCGREIQSLDTKAGKSLHKFDLGPVPSRSEVDAAV 60

Query: 61  TALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
            ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGY LLCKG QWLLTDPTLK
Sbjct: 61  IALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYHLLCKGLQWLLTDPTLK 114

[Close]

BLAST of Carg26666 vs. ExPASy TrEMBL
Match: A0A6J1H4L7 (uncharacterized protein LOC111460433 OS=Cucurbita moschata OX=3662 GN=LOC111460433 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60
           MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT
Sbjct: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60

Query: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
           ALQSLLQEYFS ESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK
Sbjct: 61  ALQSLLQEYFSTESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 113

[Close]

BLAST of Carg26666 vs. ExPASy TrEMBL
Match: A0A6J1L5J5 (uncharacterized protein LOC111499314 OS=Cucurbita maxima OX=3661 GN=LOC111499314 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.7e-53
Identity = 106/114 (92.98%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAFKSRPVV-SSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAV 60
           MAFKS PVV SSTC+NCGCDTCKS FCGREIQSLDTKAGKSLHKFDLGPVPSR+EVDAAV
Sbjct: 1   MAFKSPPVVSSSTCDNCGCDTCKSLFCGREIQSLDTKAGKSLHKFDLGPVPSRSEVDAAV 60

Query: 61  TALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
            ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGY LLCKG QWLLTDPTLK
Sbjct: 61  IALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYHLLCKGLQWLLTDPTLK 114

[Close]

BLAST of Carg26666 vs. ExPASy TrEMBL
Match: A0A5D3DM87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003190 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.4e-30
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60
           MAFKS   V ST ++ G +T  S   GREI++L T        FDLGPVPS  EV+AAV 
Sbjct: 1   MAFKSSSEVLSTSHSTG-NTSNSLRHGREIEALPT----PFPNFDLGPVPSPLEVEAAVA 60

Query: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
           ALQSLLQE+FS+ES+SKWLQPL+NS  SSILHSRGYQLLCKGFQW+LTDPT K
Sbjct: 61  ALQSLLQEWFSLESMSKWLQPLMNSSSSSILHSRGYQLLCKGFQWILTDPTFK 108

[Close]

BLAST of Carg26666 vs. ExPASy TrEMBL
Match: A0A1S3CC23 (uncharacterized protein LOC103498772 OS=Cucumis melo OX=3656 GN=LOC103498772 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.4e-30
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 1   MAFKSRPVVSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVT 60
           MAFKS   V ST ++ G +T  S   GREI++L T        FDLGPVPS  EV+AAV 
Sbjct: 1   MAFKSSSEVLSTSHSTG-NTSNSLRHGREIEALPT----PFPNFDLGPVPSPLEVEAAVA 60

Query: 61  ALQSLLQEYFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
           ALQSLLQE+FS+ES+SKWLQPL+NS  SSILHSRGYQLLCKGFQW+LTDPT K
Sbjct: 61  ALQSLLQEWFSLESMSKWLQPLMNSSSSSILHSRGYQLLCKGFQWILTDPTFK 108

[Close]

BLAST of Carg26666 vs. ExPASy TrEMBL
Match: A0A6J1DU63 (uncharacterized protein LOC111023503 OS=Momordica charantia OX=3673 GN=LOC111023503 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.1e-28
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 9   VSSTCNNCGCDTCKSFFCGREIQSLDTKAGKSLHKFDLGPVPSRAEVDAAVTALQSLLQE 68
           ++S C +CG +TCKS  CG EIQ  D  A KS  KFDLGPVPS  EVDAAVTALQS LQE
Sbjct: 1   MASNC-SCGGNTCKSLRCGSEIQKKDKAAAKSPRKFDLGPVPSPVEVDAAVTALQSYLQE 60

Query: 69  YFSIESLSKWLQPLVNSYDSSILHSRGYQLLCKGFQWLLTDPTLK 114
            FS  S+SKWLQP++N  DS ILHS GYQL+ K FQWL TDP+ K
Sbjct: 61  VFSNISMSKWLQPVMNFNDSRILHSVGYQLIYKAFQWLRTDPSFK 104

The following BLAST results are available for this feature:

BLAST of Carg26666 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013797.1	7.4e-64	100.00	hypothetical protein SDJN02_23964 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6575228.1	1.2e-58	100.00	hypothetical protein SDJN03_25867, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959467.1	4.6e-58	99.12	uncharacterized protein LOC111460433 [Cucurbita moschata]	[more]
XP_023549361.1	8.2e-55	95.58	uncharacterized protein LOC111807735 [Cucurbita pepo subsp. pepo]	[more]
XP_023006653.1	7.6e-53	92.98	uncharacterized protein LOC111499314 [Cucurbita maxima]	[more]

BLAST of Carg26666 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4L7	2.2e-58	99.12	uncharacterized protein LOC111460433 OS=Cucurbita moschata OX=3662 GN=LOC1114604...	[more]
A0A6J1L5J5	3.7e-53	92.98	uncharacterized protein LOC111499314 OS=Cucurbita maxima OX=3661 GN=LOC111499314...	[more]
A0A5D3DM87	4.4e-30	66.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CC23	4.4e-30	66.37	uncharacterized protein LOC103498772 OS=Cucumis melo OX=3656 GN=LOC103498772 PE=...	[more]
A0A6J1DU63	4.1e-28	65.71	uncharacterized protein LOC111023503 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Carg26666 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33625:SF2	SUBFAMILY NOT NAMED	coord: 20..113
None	No IPR available	PANTHER	PTHR33625	OS08G0179900 PROTEIN	coord: 20..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26666-RA	Carg26666-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane