Carg26611 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26611
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	importin subunit beta-1-like
Location	Carg_Chr15: 6970702 .. 6971664 (+)
RNA-Seq Expression	Carg26611
Synteny	Carg26611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTCCAATCCCTTCAATTTTCCCAATCCAGGTATTGATTTCTCTCCCATCTTCGAAAATCCCCTTCTGTTTATGTTCATTGGGTTTCATTTTGCTTGCTGATTTCTTTTCCCTTTTGATCTGTGCATTTTCTATTTGATTTTCCCCGATTCATCCATTTTCTGTTTTGTATCTTCATTAGGATCCAGTTCTTGATGTTTTTTTGTATTGCCTTTTTAGTATCAGTGTTTTTTTTTTTTTTTTTATTTGTTTCATTTTTTTGAAGTGGAACGAGTATGTTTATAGTGGTCTGTGTAGCATCGCATTTAAAGCTTATTTCGATCCTGTGAAAATTTGTTCTCATTTTTATTTCTTATGGTTTGAACCGGAAGATATCGATATCGACATAGACGGTTGGTCCATATGACTTTAAGGGGCTGGGTTCTCGATAGATCACCTGCAGTTTAATTAGTTTTATTAGTTTCTTTTGGTTATGCTGTTGAGATCTGGGTTTTTGCTCTTTGTTCCTGGGTTTTGCGATTGCTATAGCTAGGTTTCGTTTTTCCATTATTATTTCTGATTGAGCTTTTTGGGATGGGATGAATATTTTCTTAGTAAATGAATTTAGTTTCCTCAATTAAGAATCTGTTGACCGTTAATTTGGAGTTTCAGGTGAAACATGGCATTGGAGGTTACGCAGGTTCTTCTGAATGCACAGTCAATAGATGCAAATGTGAGGAAGCAGGCAGAGGATAGTTTAAGGCAATTTCAGGAGCAAAACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGCAATGAGGAAAAGCCAGTTGATAGTCGTAAATTAGCCCGGTGTACTGAGGTGTAG

mRNA sequence

CCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTCCAATCCCTTCAATTTTCCCAATCCAGGTTCTTCTGAATGCACAGTCAATAGATGCAAATGTGAGGAAGCAGGCAGAGGATAGTTTAAGGCAATTTCAGGAGCAAAACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGCAATGAGGAAAAGCCAGTTGATAGTCGTAAATTAGCCCGGTGTACTGAGGTGTAG

Coding sequence (CDS)

CCTTTGCGCCCTTCCATTTTCTTCTCCCTCCTCTCTTCCTTTTGCCCCTTCCCTTCCTCTAGGGTTCCTCCAACTGCCGTCTTTTCGCTCCTCCACACTCTCTTCTTCTTTCTTCCAATCCCTTCAATTTTCCCAATCCAGGTTCTTCTGAATGCACAGTCAATAGATGCAAATGTGAGGAAGCAGGCAGAGGATAGTTTAAGGCAATTTCAGGAGCAAAACCTTCCCAGTTTCTTGCTGTCTCTCTCTGGTGAATTAGGCAATGAGGAAAAGCCAGTTGATAGTCGTAAATTAGCCCGGTGTACTGAGGTGTAG

Protein sequence

PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLARCTEV

Homology

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BLAST of Carg26611 vs. NCBI nr
Match: KAG7016818.1 (Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 9.7e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVR 60
           PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVR
Sbjct: 1   PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVR 60

Query: 61  KQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLARCTEV 105
           KQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLARCTEV
Sbjct: 61  KQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLARCTEV 104

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BLAST of Carg26611 vs. NCBI nr
Match: KAG6579316.1 (Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 9.5e-20
Identity = 62/99 (62.63%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1   PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQVLLNAQSIDANVR 60
           PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQV            
Sbjct: 354 PLRPSIFFSLLSSFCPFPSSRVPPTAVFSLLHTLFFFLPIPSIFPIQV------------ 413

Query: 61  KQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
                                + G  GNEEKPVDSRKLA
Sbjct: 414 ------------------KHGIGGYAGNEEKPVDSRKLA 422

[Close]

BLAST of Carg26611 vs. NCBI nr
Match: XP_023550103.1 (importin subunit beta-1-like [Cucurbita pepo subsp. pepo] >XP_023550104.1 importin subunit beta-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. NCBI nr
Match: XP_022922215.1 (importin subunit beta-1-like [Cucurbita moschata] >XP_022972953.1 importin subunit beta-1-like [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. NCBI nr
Match: XP_022137873.1 (importin subunit beta-1-like [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-18
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDATVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. ExPASy Swiss-Prot
Match: Q9FJD4 (Importin subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KPNB1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-15
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q+L+NAQSID  VRK AE+SL+QFQEQNL  FLLSL+GEL N+EKPVDSRKLA
Sbjct: 7   QLLINAQSIDGTVRKHAEESLKQFQEQNLAGFLLSLAGELANDEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. ExPASy TrEMBL
Match: A0A6J1IBM1 (importin subunit beta-1-like OS=Cucurbita maxima OX=3661 GN=LOC111471472 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. ExPASy TrEMBL
Match: A0A6J1E840 (importin subunit beta-1-like OS=Cucurbita moschata OX=3662 GN=LOC111430269 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-19
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. ExPASy TrEMBL
Match: A0A6J1CBJ5 (importin subunit beta-1-like OS=Momordica charantia OX=3673 GN=LOC111009195 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDATVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. ExPASy TrEMBL
Match: A0A6J1K098 (importin subunit beta-1-like OS=Cucurbita maxima OX=3661 GN=LOC111491288 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLP FLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDATVRKQAEDSLRQFQEQNLPIFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. ExPASy TrEMBL
Match: A0A6J1H2D7 (importin subunit beta-1-like OS=Cucurbita moschata OX=3662 GN=LOC111459472 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-17
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           QVLLNAQSIDA VRKQAEDSLRQFQEQNLP FLLSLSGELGNEEKPVDSRKLA
Sbjct: 7   QVLLNAQSIDAAVRKQAEDSLRQFQEQNLPIFLLSLSGELGNEEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. TAIR 10
Match: AT5G53480.1 (ARM repeat superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-16
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q+L+NAQSID  VRK AE+SL+QFQEQNL  FLLSL+GEL N+EKPVDSRKLA
Sbjct: 7   QLLINAQSIDGTVRKHAEESLKQFQEQNLAGFLLSLAGELANDEKPVDSRKLA 59

[Close]

BLAST of Carg26611 vs. TAIR 10
Match: AT3G08943.1 (ARM repeat superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 5.4e-13
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q LL AQS DA VR +AE SLRQFQEQNLP FLLSLS EL N +KP +SR+LA
Sbjct: 7   QFLLAAQSADARVRTEAEASLRQFQEQNLPLFLLSLSFELENNDKPAESRRLA 59

[Close]

BLAST of Carg26611 vs. TAIR 10
Match: AT3G08947.1 (ARM repeat superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 47  QVLLNAQSIDANVRKQAEDSLRQFQEQNLPSFLLSLSGELGNEEKPVDSRKLA 100
           Q LL AQS DA VR +AE +LRQFQEQNLP FL+SLS EL N +KP +SR+LA
Sbjct: 7   QFLLAAQSADARVRTEAEGNLRQFQEQNLPLFLVSLSFELANNDKPAESRRLA 59

The following BLAST results are available for this feature:

BLAST of Carg26611 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016818.1	9.7e-49	100.00	Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6579316.1	9.5e-20	62.63	Importin subunit beta-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023550103.1	1.4e-18	100.00	importin subunit beta-1-like [Cucurbita pepo subsp. pepo] >XP_023550104.1 import...	[more]
XP_022922215.1	1.4e-18	100.00	importin subunit beta-1-like [Cucurbita moschata] >XP_022972953.1 importin subun...	[more]
XP_022137873.1	6.8e-18	98.11	importin subunit beta-1-like [Momordica charantia]	[more]

BLAST of Carg26611 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJD4	1.5e-15	77.36	Importin subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KPNB1 PE=1 SV=1	[more]

BLAST of Carg26611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBM1	6.6e-19	100.00	importin subunit beta-1-like OS=Cucurbita maxima OX=3661 GN=LOC111471472 PE=4 SV...	[more]
A0A6J1E840	6.6e-19	100.00	importin subunit beta-1-like OS=Cucurbita moschata OX=3662 GN=LOC111430269 PE=4 ...	[more]
A0A6J1CBJ5	3.3e-18	98.11	importin subunit beta-1-like OS=Momordica charantia OX=3673 GN=LOC111009195 PE=4...	[more]
A0A6J1K098	1.6e-17	96.23	importin subunit beta-1-like OS=Cucurbita maxima OX=3661 GN=LOC111491288 PE=4 SV...	[more]
A0A6J1H2D7	2.8e-17	96.23	importin subunit beta-1-like OS=Cucurbita moschata OX=3662 GN=LOC111459472 PE=4 ...	[more]

BLAST of Carg26611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53480.1	1.0e-16	77.36	ARM repeat superfamily protein	[more]
AT3G08943.1	5.4e-13	71.70	ARM repeat superfamily protein	[more]
AT3G08947.1	1.2e-12	67.92	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 46..102 e-value: 6.0E-13 score: 49.8
IPR027140	Importin subunit beta-1, plants	PANTHER	PTHR10527:SF63	IMPORTIN SUBUNIT BETA-LIKE PROTEIN	coord: 46..99
IPR040122	Importin beta family	PANTHER	PTHR10527	IMPORTIN BETA	coord: 46..99
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 47..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26611-RA	Carg26611-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0061608	nuclear import signal receptor activity
molecular_function	GO:0008139	nuclear localization sequence binding
molecular_function	GO:0031267	small GTPase binding