Carg26536 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26536
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr18: 1793993 .. 1794708 (-)
RNA-Seq Expression	Carg26536
Synteny	Carg26536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATCTATCTCGAAAAGTGTCTCAGCGTGGCGGCGATATGATGATTGCTACCAGTTCCGCTCCTATGGCGGAAAAATCAGCGGCGGAAACGGCGGCGGAGGTGGCATTGGTAGTTGGGTCTGCAAAAGACCATCTGGGTGTTCAACAATTTCATCATCAAATCACTATAACCACCAGCAACACGGCGGCGGCGGATGAACATGCTCTGTTTCGAAGAAACAGTTTCAGGAGGTCTTCTTCGTCCTGGTTTTTGGATCCCAAGAAAGTTCTTCTCTTCTTTGCCACTGTGTAAGTTAAAATCTCCTCTTAAATTACAAACCCATGTCGTCCAAATTCAGGCTGTTAATGGTGTTCGTTCTGTTGCAGGTCATGTATTGGAAGTATGGTGCTGATATGCTTCACTCTGGCCATCGGAAAACCCACCGCCGGCGAACTGGGGTTCCATTAACGGCGAGGAAACCAAGAACTGCCATGGCAACACGATGAAAAATGTTTGGACAAAGCGATAGAAATAACGAGAAAGACAAAAGGGCAGCTTCAAAGTAAGAAAGTGACTAACAAAGGGAATCTTTCTCGAGCACTCGTATCCTTGAACCGATAACTATCTTTCAGCCCAATCCAGCTTTTTCGTCCCTCCAAAAGGGTATTAAAAAAAAATAATAATAATCATATGAACCAAAATATCAACATCGAACAAAGTGTGAATAAAAATGT

mRNA sequence

AGTAATCTATCTCGAAAAGTGTCTCAGCGTGGCGGCGATATGATGATTGCTACCAGTTCCGCTCCTATGGCGGAAAAATCAGCGGCGGAAACGGCGGCGGAGGTGGCATTGGTAGTTGGGTCTGCAAAAGACCATCTGGGTGTTCAACAATTTCATCATCAAATCACTATAACCACCAGCAACACGGCGGCGGCGGATGAACATGCTCTGTTTCGAAGAAACAGTTTCAGGAGGTCTTCTTCGTCCTGGTTTTTGGATCCCAAGAAAGTTCTTCTCTTCTTTGCCACTGTGTCATGTATTGGAAGTATGGTGCTGATATGCTTCACTCTGGCCATCGGAAAACCCACCGCCGGCGAACTGGGGTTCCATTAACGGCGAGGAAACCAAGAACTGCCATGGCAACACGATGAAAAATGTTTGGACAAAGCGATAGAAATAACGAGAAAGACAAAAGGGCAGCTTCAAAGTAAGAAAGTGACTAACAAAGGGAATCTTTCTCGAGCACTCGTATCCTTGAACCGATAACTATCTTTCAGCCCAATCCAGCTTTTTCGTCCCTCCAAAAGGGTATTAAAAAAAAATAATAATAATCATATGAACCAAAATATCAACATCGAACAAAGTGTGAATAAAAATGT

Coding sequence (CDS)

AGTAATCTATCTCGAAAAGTGTCTCAGCGTGGCGGCGATATGATGATTGCTACCAGTTCCGCTCCTATGGCGGAAAAATCAGCGGCGGAAACGGCGGCGGAGGTGGCATTGGTAGTTGGGTCTGCAAAAGACCATCTGGGTGTTCAACAATTTCATCATCAAATCACTATAACCACCAGCAACACGGCGGCGGCGGATGAACATGCTCTGTTTCGAAGAAACAGTTTCAGGAGGTCTTCTTCGTCCTGGTTTTTGGATCCCAAGAAAGTTCTTCTCTTCTTTGCCACTGTGTCATGTATTGGAAGTATGGTGCTGATATGCTTCACTCTGGCCATCGGAAAACCCACCGCCGGCGAACTGGGGTTCCATTAA

Protein sequence

SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTSNTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGELGFH

Homology

[Close]

BLAST of Carg26536 vs. NCBI nr
Match: XP_022955080.1 (uncharacterized protein LOC111457151 isoform X2 [Cucurbita moschata])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS
Sbjct: 7   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 66

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
           NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL
Sbjct: 67  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 126

Query: 121 GFH 124
           GFH
Sbjct: 127 GFH 129

[Close]

BLAST of Carg26536 vs. NCBI nr
Match: KAG7012383.1 (hypothetical protein SDJN02_25135, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS
Sbjct: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
           NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL
Sbjct: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120

Query: 121 GFH 124
           GFH
Sbjct: 121 GFH 123

[Close]

BLAST of Carg26536 vs. NCBI nr
Match: XP_022955079.1 (uncharacterized protein LOC111457151 isoform X1 [Cucurbita moschata])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS
Sbjct: 9   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 68

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
           NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL
Sbjct: 69  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 128

Query: 121 GFH 124
           GFH
Sbjct: 129 GFH 131

[Close]

BLAST of Carg26536 vs. NCBI nr
Match: XP_023542793.1 (uncharacterized protein LOC111802598 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRK SQRGGDMMIATSSAPMAEKSA   AAEVALVVGSAKDHLGVQQFHHQITITT 
Sbjct: 9   SNLSRKGSQRGGDMMIATSSAPMAEKSATAAAAEVALVVGSAKDHLGVQQFHHQITITTG 68

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
            TAA DEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL
Sbjct: 69  TTAAPDEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 128

Query: 121 GFH 124
            FH
Sbjct: 129 EFH 131

[Close]

BLAST of Carg26536 vs. NCBI nr
Match: XP_023542794.1 (uncharacterized protein LOC111802598 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 115/123 (93.50%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRK SQRGGDMMIATSSAPMAEKSA   AAEVALVVGSAKDHLGVQQFHHQITITT 
Sbjct: 7   SNLSRKGSQRGGDMMIATSSAPMAEKSATAAAAEVALVVGSAKDHLGVQQFHHQITITTG 66

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
            TAA DEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL
Sbjct: 67  TTAAPDEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 126

Query: 121 GFH 124
            FH
Sbjct: 127 EFH 129

[Close]

BLAST of Carg26536 vs. ExPASy TrEMBL
Match: A0A6J1GUX4 (uncharacterized protein LOC111457151 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457151 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS
Sbjct: 9   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 68

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
           NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL
Sbjct: 69  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 128

Query: 121 GFH 124
           GFH
Sbjct: 129 GFH 131

[Close]

BLAST of Carg26536 vs. ExPASy TrEMBL
Match: A0A6J1GU64 (uncharacterized protein LOC111457151 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457151 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS
Sbjct: 7   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 66

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
           NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL
Sbjct: 67  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 126

Query: 121 GFH 124
           GFH
Sbjct: 127 GFH 129

[Close]

BLAST of Carg26536 vs. ExPASy TrEMBL
Match: A0A6J1K229 (uncharacterized protein LOC111489966 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489966 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 111/123 (90.24%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRK SQRGGDMMIATSSAPMAEK A  T AEVAL VGSAKDHLG+QQFHHQITITT 
Sbjct: 9   SNLSRKGSQRGGDMMIATSSAPMAEKLA--TVAEVALAVGSAKDHLGIQQFHHQITITTG 68

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
           +TAA DE ALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKP AGEL
Sbjct: 69  STAAPDEQALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPNAGEL 128

Query: 121 GFH 124
           GFH
Sbjct: 129 GFH 129

[Close]

BLAST of Carg26536 vs. ExPASy TrEMBL
Match: A0A6J1K0E9 (uncharacterized protein LOC111489966 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489966 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 111/123 (90.24%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   SNLSRKVSQRGGDMMIATSSAPMAEKSAAETAAEVALVVGSAKDHLGVQQFHHQITITTS 60
           SNLSRK SQRGGDMMIATSSAPMAEK A  T AEVAL VGSAKDHLG+QQFHHQITITT 
Sbjct: 7   SNLSRKGSQRGGDMMIATSSAPMAEKLA--TVAEVALAVGSAKDHLGIQQFHHQITITTG 66

Query: 61  NTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPTAGEL 120
           +TAA DE ALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKP AGEL
Sbjct: 67  STAAPDEQALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICFTLAIGKPNAGEL 126

Query: 121 GFH 124
           GFH
Sbjct: 127 GFH 127

[Close]

BLAST of Carg26536 vs. ExPASy TrEMBL
Match: A0A6J1KI90 (uncharacterized protein LOC111495477 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495477 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.6e-34
Identity = 87/134 (64.93%), Postives = 96/134 (71.64%), Query Frame = 0


Query: 2   NLSRKVSQRGGDMMIATSSAPMAEKSAAETAA-------------EVALVVGSAKDHLGV 61
           NLSRK SQRGGD MIA+++APM   S++ T A              VA+ VGS +DHLGV
Sbjct: 70  NLSRKGSQRGGDKMIASNTAPMDRDSSSPTVAVGATMAEKAGAKVAVAVAVGSQQDHLGV 129

Query: 62  QQFHHQITITTSNTAAADEHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMVLICF 121
            Q HHQITITT+NTAA  E    RRNSFRR SSSWFLDPKKVLL FATVSCIGSM+LI F
Sbjct: 130 AQVHHQITITTANTAAPVERGFLRRNSFRRPSSSWFLDPKKVLLLFATVSCIGSMILIYF 189

Query: 122 TLAIGKPTAGELGF 123
           TLAIGKP   E GF
Sbjct: 190 TLAIGKPDTEERGF 203

[Close]

BLAST of Carg26536 vs. TAIR 10
Match: AT4G21215.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 1   SNLSRKV--SQRGGDMMIATSSAPMAEKSAAETAAEV-----ALVVGSAKDHLGVQQFHH 60
           SN  RK+     G D  I+   +P+   S  E A+ V     A    +A   +      H
Sbjct: 60  SNNERKLHFDANGNDKEISFPQSPLRGSSTPEKASTVGPTEHAGTATTAATAVSASPL-H 119

Query: 61  QITITTSNTAAAD---------EHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMV 120
           QIT+TT+ TAA +              R++SF+RS +SW LDPKK++LFFAT+S +GS++
Sbjct: 120 QITVTTAATAAGNMITDQNRERRFGFSRKSSFKRSHTSWMLDPKKIVLFFATLSSMGSIL 179

[Close]

BLAST of Carg26536 vs. TAIR 10
Match: AT4G21215.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 51/136 (37.50%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 1   SNLSRKV--SQRGGDMMIATSSAPMAEKSAAETAAEV-----ALVVGSAKDHLGVQQFHH 60
           SN  RK+     G D  I+   +P+   S  E A+ V     A    +A   +      H
Sbjct: 62  SNNERKLHFDANGNDKEISFPQSPLRGSSTPEKASTVGPTEHAGTATTAATAVSASPL-H 121

Query: 61  QITITTSNTAAAD---------EHALFRRNSFRRSSSSWFLDPKKVLLFFATVSCIGSMV 120
           QIT+TT+ TAA +              R++SF+RS +SW LDPKK++LFFAT+S +GS++
Sbjct: 122 QITVTTAATAAGNMITDQNRERRFGFSRKSSFKRSHTSWMLDPKKIVLFFATLSSMGSIL 181

The following BLAST results are available for this feature:

BLAST of Carg26536 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955080.1	2.7e-58	100.00	uncharacterized protein LOC111457151 isoform X2 [Cucurbita moschata]	[more]
KAG7012383.1	2.7e-58	100.00	hypothetical protein SDJN02_25135, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022955079.1	2.7e-58	100.00	uncharacterized protein LOC111457151 isoform X1 [Cucurbita moschata]	[more]
XP_023542793.1	4.5e-53	93.50	uncharacterized protein LOC111802598 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023542794.1	4.5e-53	93.50	uncharacterized protein LOC111802598 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg26536 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUX4	1.3e-58	100.00	uncharacterized protein LOC111457151 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GU64	1.3e-58	100.00	uncharacterized protein LOC111457151 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K229	1.7e-50	90.24	uncharacterized protein LOC111489966 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K0E9	1.7e-50	90.24	uncharacterized protein LOC111489966 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1KI90	6.6e-34	64.93	uncharacterized protein LOC111495477 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Carg26536 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21215.1	1.1e-12	37.50	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]
AT4G21215.2	1.1e-12	37.50	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34064:SF4	PROTEIN, PUTATIVE-RELATED	coord: 2..120
None	No IPR available	PANTHER	PTHR34064	OS04G0672300 PROTEIN	coord: 2..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26536-RA	Carg26536-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane