Carg26511 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26511
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCASP-like protein
LocationCarg_Chr13: 4890357 .. 4891008 (-)
RNA-Seq ExpressionCarg26511
SyntenyCarg26511
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAAACCCTAAAATAATTTCCCTCTTTTCAATTCATTCCTTTCTTTTTGCTCTCCACTCCTTTTTTTTTTCTTCTTCTCCACTTCCTTCCCTCCTTCCTTCCTTCCTTCTCAGATCCAACATTCCGCCCTTTCTTCTTCTCCAGGTGAGCATCTTACTCCCCCTCACTCAAATTTCCCCCTTATTTCTTCCTTTTCCTTTCCGATTTCGTCTTGATTCTGTTGATCCGATCTTTCTTGCTCTTTTCTTCTTCTTTTCCTTTGTTTTGGTGGATAATTCTTTGATCAAGATTTTGAAACGTTACCGGTGGATAATTCTTGCCCTTTGTGTTTGATTTTGTTTTTCCTGCTCTTAATTCTCTCTCTTTATCCATTTTCTTTGTCATTCATGGTTGTTGATTGCAGCTTGGACTTGTGGAACCGCCTCTCTGATCATTTCCGGGTAAATTCGACTACTTAAAAGAGGGTTTTCTTGTTTAAAGTTCGAGCTCTGGGTCTCATGAGAATTTTTAGGGGAATGCAGAAATCGTTTTGCAAGGAGCAGAAGGAGCTGGGCTGGAAGAATATATTCTGCCGAGGGTTGGGTGTCACTGCTCCCAAGGCAAGAACTCGTGATAAACCCATGCTTATTACTGCCTTCTTGACTCTCTGA

mRNA sequence

GCAAAAACCCTAAAATAATTTCCCTCTTTTCAATTCATTCCTTTCTTTTTGCTCTCCACTCCTTTTTTTTTTCTTCTTCTCCACTTCCTTCCCTCCTTCCTTCCTTCCTTCTCAGATCCAACATTCCGCCCTTTCTTCTTCTCCAGGTGAGCATCTTACTCCCCCTCACTCAAATTTCCCCCTTATTTCTTCCTTTTCCTTTCCGATTTCGTCTTGATTCTGTTGATCCGATCTTTCTTGCTCTTTTCTTCTTCTTTTCCTTTGTTTTGGTGGATAATTCTTTGATCAAGATTTTGAAACGTTACCGGTGGATAATTCTTGCCCTTTGTGTTTGATTTTGTTTTTCCTGCTCTTAATTCTCTCTCTTTATCCATTTTCTTTGTCATTCATGGTTGTTGATTGCAGCTTGGACTTGTGGAACCGCCTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGAAGGAGCTGGGCTGGAAGAATATATTCTGCCGAGGGTTGGGTGTCACTGCTCCCAAGGCAAGAACTCGTGATAAACCCATGCTTATTACTGCCTTCTTGACTCTCTGA

Coding sequence (CDS)

ATGGTTGTTGATTGCAGCTTGGACTTGTGGAACCGCCTCTCTGATCATTTCCGGAAATCGTTTTGCAAGGAGCAGAAGGAGCTGGGCTGGAAGAATATATTCTGCCGAGGGTTGGGTGTCACTGCTCCCAAGGCAAGAACTCGTGATAAACCCATGCTTATTACTGCCTTCTTGACTCTCTGA

Protein sequence

MVVDCSLDLWNRLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL
Homology
BLAST of Carg26511 vs. NCBI nr
Match: KAG7019361.1 (hypothetical protein SDJN02_18321 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MVVDCSLDLWNRLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 60
          MVVDCSLDLWNRLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL
Sbjct: 1  MVVDCSLDLWNRLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 60

BLAST of Carg26511 vs. NCBI nr
Match: KAG6583714.1 (hypothetical protein SDJN03_19646, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 4.8e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 6  SLDLWNRLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 61
          SLDLWNRLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL
Sbjct: 20 SLDLWNRLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 74

BLAST of Carg26511 vs. NCBI nr
Match: KAE8652815.1 (hypothetical protein Csa_023994, partial [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 9.7e-17
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 6  SLDLWNRLSDHFRKSFCKE-QKELGWKNIFCRGLGVTAPKARTRDKPMLITAFLTL 61
          SLDLW R SDHFRKSFCKE Q+ELGW NIF RGLGVTAPKARTRDKPM  TAFLTL
Sbjct: 10 SLDLWKRFSDHFRKSFCKEQQRELGWNNIFSRGLGVTAPKARTRDKPM-PTAFLTL 64

BLAST of Carg26511 vs. NCBI nr
Match: TKR98526.1 (Casparian strip membrane protein [Populus alba])

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 31/54 (57.41%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 6   SLDLW----NRLSDHFRKSFCKEQKE---LGWKNIFCRGLGVTAPKARTRDKPM 53
           SL  W      L   FRKSF  + KE   LGWKN F  G+G+TAPKARTRDKPM
Sbjct: 192 SLSAWAFEGKSLDFFFRKSFRCDNKELNALGWKNSFSHGIGITAPKARTRDKPM 245

BLAST of Carg26511 vs. NCBI nr
Match: KAF5470938.1 (hypothetical protein F2P56_011422, partial [Juglans regia])

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0

Query: 17  FRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPM 53
           FR+SF +E K LGWK  F +G+GVT PKARTRDKP+
Sbjct: 77  FRRSFREEHKALGWKKAFSQGIGVTVPKARTRDKPI 112

BLAST of Carg26511 vs. ExPASy TrEMBL
Match: A0A4U5PQ38 (CASP-like protein OS=Populus alba OX=43335 GN=D5086_0000202630 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.3e-06
Identity = 31/54 (57.41%), Postives = 34/54 (62.96%), Query Frame = 0

Query: 6   SLDLW----NRLSDHFRKSFCKEQKE---LGWKNIFCRGLGVTAPKARTRDKPM 53
           SL  W      L   FRKSF  + KE   LGWKN F  G+G+TAPKARTRDKPM
Sbjct: 192 SLSAWAFEGKSLDFFFRKSFRCDNKELNALGWKNSFSHGIGITAPKARTRDKPM 245

BLAST of Carg26511 vs. ExPASy TrEMBL
Match: A0A6J5V571 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS37768 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.5e-04
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0

Query: 18 RKSFCKEQKELGWKNIFCRGLGVTAPKARTRDK 51
          ++SF KEQ  LGWK  F +G+GVTAPKARTRDK
Sbjct: 2  QRSFPKEQNVLGWKKTFSQGIGVTAPKARTRDK 34

BLAST of Carg26511 vs. ExPASy TrEMBL
Match: A0A7J8QTS9 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_017523 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0

Query: 12 RLSDHFRKSFCKEQKELGWKNIFCRGLGVTAPKARTRDKPMLITAFL 59
          RL    ++ F  E   LGWK  F +G+GVT PKARTRDKPM +T  L
Sbjct: 2  RLVRAMQRLFRDEVNVLGWKKSFSQGIGVTVPKARTRDKPMTMTRIL 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7019361.12.1e-27100.00hypothetical protein SDJN02_18321 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6583714.14.8e-24100.00hypothetical protein SDJN03_19646, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652815.19.7e-1785.71hypothetical protein Csa_023994, partial [Cucumis sativus][more]
TKR98526.11.7e-0557.41Casparian strip membrane protein [Populus alba][more]
KAF5470938.13.8e-0566.67hypothetical protein F2P56_011422, partial [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4U5PQ388.3e-0657.41CASP-like protein OS=Populus alba OX=43335 GN=D5086_0000202630 PE=3 SV=1[more]
A0A6J5V5713.5e-0469.70Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS37768 PE=4 S... [more]
A0A7J8QTS94.5e-0453.19Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_017523 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26511-RACarg26511-RAmRNA