Carg26488 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26488
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 8215875 .. 8216458 (-)
RNA-Seq ExpressionCarg26488
SyntenyCarg26488
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTATTCCAAGCATATACTTTTTGAAGGTATTTTTATTATGATTATTTTTTATTCTTTTGTCGTGTAGCTAAATATTATGATGATGCCTTCAATTGATTCAAAGGAATTTTCTTTTTCTATACTATCTTTAGAAGTGGTCAGACATATTCTAGCTACTCAATCGTTCGAGAAGGTATGTATTTATGTTTAATCTTCTTAAAGTTGAAGAGGACAAAGTTCAGAATTTGGAAGGGATAATTTAAAAATCAATTGAACTTCTTCTACTTTCTTGGTTTCAATAAAAGCCCTTAGTTTAATTGCGACACCTCTAAATTAGTTAGATAATTTTCCTTTTTTTTAAAAAAAAATAATTTTAAAAATTACCATTTTAAAACTTCTTACCTTACGTGTCCTGAAAAAAGGCCTTCTAAATTTTAAAACCTTGTTAAATAAAGTGGGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTCAGAGAGCCATCGATTTTAGGAGCCAAATTGAGATTAACAATGCACATAATTTAGATGAACCCAAAAAAATTAGAGATGAATATTAG

mRNA sequence

ATGCTTATTCCAAGCATATACTTTTTGAAGCTAAATATTATGATGATGCCTTCAATTGATTCAAAGGAATTTTCTTTTTCTATACTATCTTTAGAAGTGGTCAGACATATTCTAGCTACTCAATCGTTCGAGAAGAGAGCCATCGATTTTAGGAGCCAAATTGAGATTAACAATGCACATAATTTAGATGAACCCAAAAAAATTAGAGATGAATATTAG

Coding sequence (CDS)

ATGCTTATTCCAAGCATATACTTTTTGAAGCTAAATATTATGATGATGCCTTCAATTGATTCAAAGGAATTTTCTTTTTCTATACTATCTTTAGAAGTGGTCAGACATATTCTAGCTACTCAATCGTTCGAGAAGAGAGCCATCGATTTTAGGAGCCAAATTGAGATTAACAATGCACATAATTTAGATGAACCCAAAAAAATTAGAGATGAATATTAG

Protein sequence

MLIPSIYFLKLNIMMMPSIDSKEFSFSILSLEVVRHILATQSFEKRAIDFRSQIEINNAHNLDEPKKIRDEY
Homology
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BLAST of Carg26488 vs. NCBI nr
Match: KAG7022422.1 (hypothetical protein SDJN02_16153, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.9 bits (346), Expect = 3.5e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 1  MLIPSIYFLKLNIMMMPSIDSKEFSFSILSLEVVRHILATQSFEKRAIDFRSQIEINNAH 60
          MLIPSIYFLKLNIMMMPSIDSKEFSFSILSLEVVRHILATQSFEKRAIDFRSQIEINNAH
Sbjct: 1  MLIPSIYFLKLNIMMMPSIDSKEFSFSILSLEVVRHILATQSFEKRAIDFRSQIEINNAH 60

Query: 61 NLDEPKKIRDEY 73
          NLDEPKKIRDEY
Sbjct: 61 NLDEPKKIRDEY 72

The following BLAST results are available for this feature:
BLAST of Carg26488 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022422.13.5e-29100.00hypothetical protein SDJN02_16153, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26488 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26488 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26488 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26488-RACarg26488-RAmRNA