Carg26481 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26481
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr20: 4294901 .. 4295713 (+)
RNA-Seq ExpressionCarg26481
SyntenyCarg26481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGTCTTTAACACCATTTTGACATGGTGAAAGCAGCTAGCAAATGGAAGTTAACGTTGCCCCCATTGTCAAGTTGGACAAGTCTTAGTCAATGCCATACTGGCTCCAAGCTACTAGTGGGCATAAATGATCAAACTTGGGACTGATCATGGCTTGATTGTTACCTCCTCCATCACAAGGAGTGGAATCTGTTTGAGAATAATATGTGCACTCCGAATCCTTATCAAGTATCGCCCTACTCCGACCCTTCTTCACATGAAAGTAATATCAATAACGATTCCTCGGGATTGTTCTGCTACATAGAAAGATTCAATCCTCTTTGACTGTCCCCATGAGTGAATGTGAACATGCATTTTTTTCATTTAGTTCCCAAAGGCTGATAAGAAAGGATGCGTGTTCAATCGTTAAGATGCTATACATGGCTTTCGTGTTCATTGCAGCCTTGCAGGTTGGAAGAAACGGACGAGAATCTTCAACTTTATGGAGAAGAGAAGAATCACACCGCCCCAGTCGAGAAGAATCGCGCTCGTGGGCATGGCCCAGGGATTCTACTCTTCTTTCACTGGTATGATCATTGACTTGGTGTAATGTGAAAACATTTCAGTCATTTCCTGAATTATATTAGTGAGAAGTTAAGCATTCTATATCACTTTTCCATGGCAAAGTTGTCATCTGTGAAGTTTTTTGCATCATAAAGTTCTGAGTTATATTTATGCTCTTCATCTGGCTTGGATTAACAATCACTAAAACTGACACAGGACAAAATTGATTGCTTATTGTTCGTCCAGGTTTGTCCCTATGAATGATCGTTGA

mRNA sequence

TTTGTCTTTAACACCATTTTGACATGGTGAAAGCAGCTAGCAAATGGAAGTTAACGTTGCCCCCATTGTCAAGTTGGACAAGTCTTAGTCAATGCCATACTGGCTCCAAGCTACTAGTGGGCATAAATGATCAAACTTGGGACTGATCATGGCTTGATTGTTACCTCCTCCATCACAAGGAGTGGAATCTGTTTGAGAATAATATGTGCACTCCGAATCCTTATCAAGTATCGCCCTACTCCGACCCTTCTTCACATGAAAGTAATATCAATAACGATTCCTCGGGATTGTTCTGCTACATAGAAAGATTCAATCCTCTTTGACTGTCCCCATGAGTGAATGTGAACATGCATTTTTTTCATTTAGTTCCCAAAGGCTGATAAGAAAGGATGCGTGTTCAATCGTTAAGATGCTATACATGGCTTTCGTGTTCATTGCAGCCTTGCAGGTTGGAAGAAACGGACGAGAATCTTCAACTTTATGGAGAAGAGAAGAATCACACCGCCCCAGTCGAGAAGAATCGCGCTCGTGGGCATGGCCCAGGGATTCTACTCTTCTTTCACTGGACAAAATTGATTGCTTATTGTTCGTCCAGGTTTGTCCCTATGAATGATCGTTGA

Coding sequence (CDS)

ATGCGTGTTCAATCGTTAAGATGCTATACATGGCTTTCGTGTTCATTGCAGCCTTGCAGGTTGGAAGAAACGGACGAGAATCTTCAACTTTATGGAGAAGAGAAGAATCACACCGCCCCAGTCGAGAAGAATCGCGCTCGTGGGCATGGCCCAGGGATTCTACTCTTCTTTCACTGGACAAAATTGATTGCTTATTGTTCGTCCAGGTTTGTCCCTATGAATGATCGTTGA

Protein sequence

MRVQSLRCYTWLSCSLQPCRLEETDENLQLYGEEKNHTAPVEKNRARGHGPGILLFFHWTKLIAYCSSRFVPMNDR
Homology
[Close]
BLAST of Carg26481 vs. NCBI nr
Match: KAG7010931.1 (hypothetical protein SDJN02_27729 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.9 bits (429), Expect = 8.7e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MRVQSLRCYTWLSCSLQPCRLEETDENLQLYGEEKNHTAPVEKNRARGHGPGILLFFHWT 60
          MRVQSLRCYTWLSCSLQPCRLEETDENLQLYGEEKNHTAPVEKNRARGHGPGILLFFHWT
Sbjct: 1  MRVQSLRCYTWLSCSLQPCRLEETDENLQLYGEEKNHTAPVEKNRARGHGPGILLFFHWT 60

Query: 61 KLIAYCSSRFVPMNDR 77
          KLIAYCSSRFVPMNDR
Sbjct: 61 KLIAYCSSRFVPMNDR 76

[Close]
BLAST of Carg26481 vs. NCBI nr
Match: KAG6571118.1 (hypothetical protein SDJN03_30033, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 28/39 (71.79%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 38 TAPVEKNRARGHGPGILLFFHWTKLIAYCSSRFVPMNDR 77
          TAPVEKNRARG GPGILLFFHW          FVPMNDR
Sbjct: 65 TAPVEKNRARGRGPGILLFFHW----------FVPMNDR 93

[Close]
BLAST of Carg26481 vs. NCBI nr
Match: XP_008460937.1 (PREDICTED: uncharacterized protein LOC103499672 isoform X2 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 47 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 78

[Close]
BLAST of Carg26481 vs. NCBI nr
Match: KAA0045537.1 (uncharacterized protein E6C27_scaffold243G00270 [Cucumis melo var. makuwa] >TYK28854.1 uncharacterized protein E5676_scaffold303G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 59 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 90

[Close]
BLAST of Carg26481 vs. NCBI nr
Match: XP_008460936.1 (PREDICTED: uncharacterized protein LOC103499672 isoform X1 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 59 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 90

[Close]
BLAST of Carg26481 vs. ExPASy TrEMBL
Match: A0A5A7TUN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00640 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 59 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 90

[Close]
BLAST of Carg26481 vs. ExPASy TrEMBL
Match: A0A1S3CD32 (uncharacterized protein LOC103499672 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499672 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 47 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 78

[Close]
BLAST of Carg26481 vs. ExPASy TrEMBL
Match: A0A1S3CES9 (uncharacterized protein LOC103499672 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499672 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.4e-04
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 9  YTWLSCSLQPCRLEETDENLQLYGEEKNHTAP 41
          + WLS SLQPCRLEET++NL+ YG+EKN T P
Sbjct: 59 HLWLSYSLQPCRLEETNKNLEFYGDEKNRTIP 90

The following BLAST results are available for this feature:
BLAST of Carg26481 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010931.18.7e-39100.00hypothetical protein SDJN02_27729 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6571118.12.2e-0571.79hypothetical protein SDJN03_30033, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008460937.19.1e-0468.75PREDICTED: uncharacterized protein LOC103499672 isoform X2 [Cucumis melo][more]
KAA0045537.19.1e-0468.75uncharacterized protein E6C27_scaffold243G00270 [Cucumis melo var. makuwa] >TYK2... [more]
XP_008460936.19.1e-0468.75PREDICTED: uncharacterized protein LOC103499672 isoform X1 [Cucumis melo][more]
BLAST of Carg26481 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TUN84.4e-0468.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CD324.4e-0468.75uncharacterized protein LOC103499672 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CES94.4e-0468.75uncharacterized protein LOC103499672 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Carg26481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26481-RACarg26481-RAmRNA