Carg26480 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26480
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Encodes a protein of unknown function that is a marker for oxidative stress response.
Location	Carg_Chr20: 4287782 .. 4288600 (+)
RNA-Seq Expression	Carg26480
Synteny	Carg26480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACTTTATTTTGGGCTTCTCCAAAAGGCCTCAAGATGTATTCCTTACTTATAAAACCCATGACCATTCCCTAAATTAGCAAATGTGGAACTGAAACCACTCCCCTTTTAGCTTTACTATTTTTCTCTCTCCAGCTAATTATATACCCATTTTTTCCCTCACAGCTACAACTTTGGTTCCAGGTTAGTACCAATGGAACAACAGAAAGATAAACCATCAGCTGCAGCAAACCCACCCATTCCTTCCTGTAGAAAGAAGAAAAATGAAGACGGTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCATGCATCGATGGACGAACACAAATCGTGCTTCAAGAAAACTATCAACAAGGTTAATCTCATTTTCTTCTCTGCGCATCTAAAAGAGAAATAATCATGTTTCTGAGATATGTGGTGGATATGTTTCGTTACAAACTCAAAAATCTTTTGATTCGTTACAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAGTAAATTCTCTTTCTTCCTTTCTTCAAGGATACTTTGTCTGCATCTTCAACCAACTCCATGAAATCTTGGATTCCTGTTTATAGTCTATTTTACATGATTCCACATGAAACGTTACCGTTTTGTCTCCCTTGATGTGCTATTAATTGGTGTTATATTTTGAGCCACCAACCAATACTGTTCTTGGAATTTTTCTTGCTTGTTTGGTTACCTCTTGATGCTTAGAGTTTATCTAAAAGGACTTGATTTCTGTTTCC

mRNA sequence

TGACTTTATTTTGGGCTTCTCCAAAAGGCCTCAAGATGTATTCCTTACTTATAAAACCCATGACCATTCCCTAAATTAGCAAATGTGGAACTGAAACCACTCCCCTTTTAGCTTTACTATTTTTCTCTCTCCAGCTAATTATATACCCATTTTTTCCCTCACAGCTACAACTTTGGTTCCAGGTTAGTACCAATGGAACAACAGAAAGATAAACCATCAGCTGCAGCAAACCCACCCATTCCTTCCTGTAGAAAGAAGAAAAATGAAGACGGTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCATGCATCGATGGACGAACACAAATCGTGCTTCAAGAAAACTATCAACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAGTAAATTCTCTTTCTTCCTTTCTTCAAGGATACTTTGTCTGCATCTTCAACCAACTCCATGAAATCTTGGATTCCTGTTTATAGTCTATTTTACATGATTCCACATGAAACGTTACCGTTTTGTCTCCCTTGATGTGCTATTAATTGGTGTTATATTTTGAGCCACCAACCAATACTGTTCTTGGAATTTTTCTTGCTTGTTTGGTTACCTCTTGATGCTTAGAGTTTATCTAAAAGGACTTGATTTCTGTTTCC

Coding sequence (CDS)

ATGGAACAACAGAAAGATAAACCATCAGCTGCAGCAAACCCACCCATTCCTTCCTGTAGAAAGAAGAAAAATGAAGACGGTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCATGCATCGATGGACGAACACAAATCGTGCTTCAAGAAAACTATCAACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGGAATTCAGAGACAAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAGTAA

Protein sequence

MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADRNSETSGVESSLPLRTTVSE

Homology

[Close]

BLAST of Carg26480 vs. NCBI nr
Match: XP_023513344.1 (uncharacterized protein LOC111777852 [Cucurbita pepo subsp. pepo] >XP_023513345.1 uncharacterized protein LOC111777852 [Cucurbita pepo subsp. pepo] >KAG6571116.1 hypothetical protein SDJN03_30031, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010930.1 hypothetical protein SDJN02_27728 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. NCBI nr
Match: XP_022986651.1 (uncharacterized protein LOC111484328 [Cucurbita maxima] >XP_022986652.1 uncharacterized protein LOC111484328 [Cucurbita maxima])

HSP 1 Score: 173.7 bits (439), Expect = 7.0e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME+QKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEKQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. NCBI nr
Match: XP_022944752.1 (uncharacterized protein LOC111449113 [Cucurbita moschata] >XP_022944753.1 uncharacterized protein LOC111449113 [Cucurbita moschata])

HSP 1 Score: 173.3 bits (438), Expect = 9.1e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADR+SETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRHSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. NCBI nr
Match: XP_023006871.1 (uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023006872.1 uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023533150.1 uncharacterized protein LOC111795127 [Cucurbita pepo subsp. pepo] >XP_023533151.1 uncharacterized protein LOC111795127 [Cucurbita pepo subsp. pepo] >XP_023533869.1 uncharacterized protein LOC111795589 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQK+KPSAAANPPIPSCRKKKNE+ TFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. NCBI nr
Match: KAG6605077.1 (Epoxide hydrolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1   MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
           MEQQK+KPSAAANPPIPSCRKKKNE+ TFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 279 MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 338

Query: 61  RMSKVVADRNSETSGVESSLPLRTTVSE 89
           RMSKVVAD+NSETSGVESSLPLRTTVSE
Sbjct: 339 RMSKVVADKNSETSGVESSLPLRTTVSE 366

[Close]

BLAST of Carg26480 vs. ExPASy TrEMBL
Match: A0A6J1J859 (uncharacterized protein LOC111484328 OS=Cucurbita maxima OX=3661 GN=LOC111484328 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME+QKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEKQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. ExPASy TrEMBL
Match: A0A6J1FYY5 (uncharacterized protein LOC111449113 OS=Cucurbita moschata OX=3662 GN=LOC111449113 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.4e-40
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADR+SETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRHSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. ExPASy TrEMBL
Match: A0A6J1KX05 (uncharacterized protein LOC111499535 OS=Cucurbita maxima OX=3661 GN=LOC111499535 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQK+KPSAAANPPIPSCRKKKNE+ TFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. ExPASy TrEMBL
Match: A0A5A7TRS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00290 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1   MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
           MEQQK+KPS AANPPIPSCRKKKNE+ TFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 53  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 112

Query: 61  RMSKVVADRNSETSGVESSLPLRTTVSE 89
           RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 113 RMSKVVADRNSETNGVESSLPLRTTVSE 140

[Close]

BLAST of Carg26480 vs. ExPASy TrEMBL
Match: A0A1S3CDL9 (uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.2e-38
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQK+KPS AANPPIPSCRKKKNE+ TFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of Carg26480 vs. TAIR 10
Match: AT4G39235.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 3.7e-23
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME Q ++   +  P + SCRKK  +D TF ED+KDHID+FIHASMDEHKSCF+KTI KMF
Sbjct: 1  METQTNQ---SPKPAMTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMF 60

Query: 61 RMSKVVADRNS-ETSGVESSLPLRTTVSE 89
           +SK VA++ + E  GVES LPL+TTVSE
Sbjct: 61 GLSKAVAEKQAVEAKGVESQLPLQTTVSE 86

[Close]

BLAST of Carg26480 vs. TAIR 10
Match: AT3G05570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39235.1); Has 73 Blast hits to 73 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 9.1e-22
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MEQQKDKPSAAANPPIPSCRKKKNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME QK +      P   SCRKK  +D  FLED+KDHID+FI+ASMD+HK+CF KTI KMF
Sbjct: 1  METQKTQAENPPKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 60

Query: 61 RMSKVVADRNSETS--GVESSLPLRTTVSE 89
           +SK VAD+    +  GVES LPL+TTVS+
Sbjct: 61 GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90

[Close]

BLAST of Carg26480 vs. TAIR 10
Match: AT2G21640.1 (Encodes a protein of unknown function that is a marker for oxidative stress response. )

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 13  NPPIP-----SCRKK-KNEDGTFLEDLKDHIDEFIHASMDEHKSCFKKTINKM---FRMS 72
           NPP P     SCRK+ K+++ TF  +LKDH+DEFIHASMDEHK+CFK T++K+   F  +
Sbjct: 19  NPPKPQVPASSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKA 78

Query: 73  KVVADRNSETSG-VESSLPLRTTVSE 89
           + VA++  E    VE   PL+T V++
Sbjct: 79  EAVAEKQIEAKEVVEIHSPLQTAVTK 104

The following BLAST results are available for this feature:

BLAST of Carg26480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513344.1	2.4e-40	100.00	uncharacterized protein LOC111777852 [Cucurbita pepo subsp. pepo] >XP_023513345....	[more]
XP_022986651.1	7.0e-40	98.86	uncharacterized protein LOC111484328 [Cucurbita maxima] >XP_022986652.1 uncharac...	[more]
XP_022944752.1	9.1e-40	98.86	uncharacterized protein LOC111449113 [Cucurbita moschata] >XP_022944753.1 unchar...	[more]
XP_023006871.1	2.2e-38	95.45	uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023006872.1 uncharac...	[more]
KAG6605077.1	2.2e-38	95.45	Epoxide hydrolase 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg26480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J859	3.4e-40	98.86	uncharacterized protein LOC111484328 OS=Cucurbita maxima OX=3661 GN=LOC111484328...	[more]
A0A6J1FYY5	4.4e-40	98.86	uncharacterized protein LOC111449113 OS=Cucurbita moschata OX=3662 GN=LOC1114491...	[more]
A0A6J1KX05	1.1e-38	95.45	uncharacterized protein LOC111499535 OS=Cucurbita maxima OX=3661 GN=LOC111499535...	[more]
A0A5A7TRS7	3.2e-38	94.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CDL9	3.2e-38	94.32	uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=...	[more]

BLAST of Carg26480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39235.1	3.7e-23	61.80	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G05570.1	9.1e-22	57.78	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G21640.1	2.0e-13	48.84	Encodes a protein of unknown function that is a marker for oxidative stress resp...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..88
None	No IPR available	PANTHER	PTHR33622	FAMILY NOT NAMED	coord: 3..88
None	No IPR available	PANTHER	PTHR33622:SF10	DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF	coord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26480-RA	Carg26480-RA	mRNA