Carg26455 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26455
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich splicing factor SC35-like
Location	Carg_Chr11: 9636290 .. 9641901 (+)
RNA-Seq Expression	Carg26455
Synteny	Carg26455

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCTCTTCCGGATAGTTCACTCGACGGATCTCTCTTCTTCTGTCCTCTGGAACCCTAACCCTAACCCTAATCTTCATCGTCCTACAAAAATGTCTCATTTTGGAAGGTCAGGTCCTCCAGATATTACAGACACCTACTCGCTTCTCGTGCTCAACATCACCTTCCGTATGCTTCAATCTCCCTCTCTTTCTTAATTCTTTTTGTTTCTTTTTTTGTTTTGGTTTTGTTTCTCGATTCTTAGCTGTGACTGAGATTTTATGTGTTTTTAGGCACCACTGCTGATGACCTCTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGTATAGTTCCCTGCTTTGTTGCGATTGATTACCCTTTTTTATTTTATTTTATTTTATTTTTTTTATTTTTTATGATTTTATCCTCTGGAATTTGTTTGATTTCTGTTAGAAATGATAGAATTTTTAATAGCTGGCATGAGTTTTGTGTTTGTTAGATTAAACATTTAGAGGTTTAGGATTGAGTTGATTTCCTTTCATTGATATTCTTCTAGTTTTTGTGACATCAGTTTGCACGTGAATGGAATTGTACTCTTCATTCAGCTTAAATGCTGCATGGGGTTTTTTATTTTTATATTTCATTTTTTTTTTGTTTGTTTATTTATTTTAAAATTTTAGAATTGGGAATTGATTACTTTCATTTTGACTGTTTCGTGATTGTCTCTTATGTTGTTTTGTGGGCTAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTACGCAGATGAAGCTCAGAAAGCAGTGGACAGGCTAGATGGTACCCCCGCCACTTTGTCTCATGTTGTTTGATTTTGTCCTTGTCCTCTCCAAGTGGAAGTGATTTGTACATACTCACAAGCTACAAGGATGATGTTTGAGGATAGAAGGCAGATAACCTTTTGGGCGTTATTAACATCATTTTGGGTCTATAATTTCAAGAAGTTCTGAAATTGATTCCCTCACTTCTTTGTTAGTTCTGGTTGACTTATAGTCATGCCTCTACTCTCCTCCATTCGACAAGTTCAATGTGTTTGGTTTAGGGAGTTAACCTGCTGAATATGAATTGGAAACTGAAATACGTATATATTCTATGTTGTGTTCCAGGCACTGTGGTTGATGGACGAGAGATAACTGTCCAGTTTGCTAAATATGGTCCAAATGCTGAAAAGATGTGAGTCATGAAGTAGTGCTTTTACTCTTTTCCCTCATGCTTGGGCTCTTTTCACTTCAGATATATTTGTTTTGCTACTAATGGGTGTTGTTTCTATGTCAAAATATGTTTTTAGTCAGAAAGGAAAAATCAGCGAACCATTTCCAAAGTCAAGACACAGGTCTAGAAGTCGTAGTCCACGGAGACGGTAATTTTTTCTTCCACATCCATTAGTAATGTCTTTGGAGATGCTGAAATTTTATATACTACGATTGAATATTTGTTATCCTTGAGGAATCTAGCCCAGTCATTAGATTTCTGTTGTGGAATAATTATTTCCCCAGATTGAGATGTTCAAGGGTGAAAGCTTTTGTGGGATAGGATATCGGAGGAATATGTGCAGTCACACTTTTTGAAACCTCAGATTATTGTGATTACTGTCCGTGCAGAGGACTATTTATTGACTCCTGTTTCTTCTATCTCAGATATGATATTCAAAATGCAGCAGTGATTCTATCATGAGATGTCATAATTATGGAAATGTAAAATGTTGGTAGATCTAAAAGGAAATTGTCTTAGTGTAATTTATATATGGCTTGGGTTAGGTAGCGGTGTTCAATTCTTTTCTTTCATGAAGTCCAGGTTTTGTCCATTTGCTTGAAAGTTACTAACTAAAACTCCGTACTTTCTTGGATTATCTTGTTAAGGTCCATTTTTATCTGGTTTTTATCTGTTTTTATCTGTTTTTTTTTTTTTTTTTTTTTGTAGTTTTATTATTCTTTTATTCAAGTTACTAATTAAAATTTCTCACTTTCAGATATCGGGATGATTACAGAGATAGGGACTATAGGAGGAGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGGGGGAGAGAAAGAGAGAGGGAAAGAGACTATCGCAGGCGGAGCAGGAGCATCAGTCCCAGGCGGCCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGTAGATGAACGTAGAAATCGCAGTCGCAGCCATAGCCGAAGTCGTGGCCGTAGTCGTTCTGTTAATAGGTTCTAAAGATATTACAATTTTTATCCAGTTGGTTAAAAGTGTGGAATTTTACTTCTAATCAGCCCTTTTTCTACATATTACAGTGCTTCTCCTGGTAGACGAAGCCCTAGTCCTCAAAGGAGTCTGTCTCCTCGAAGGAGTCTTTCACCACGAAGGAGTCTTTCACCTCAAAGGAGTCTTTCACCTCGAAGGAGTCCATCTCCAAGGGGTGAAAGTCCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTCCTAGGAGTGTTTCACCACGAGGTCAACCTGCTGATTCACGAAGCCCATCTCCACAAAACTCGGATGTCGATGTAAGTTGCTTTATGAGCTATTTTGGATGATTAGTCTGGACTTGATTAAAGTAGTTAAGTTTTTACCTGCTTTAATTTTGACAGAAGTGAATACTGATGGATGCAAGGAGAACTGTGGACATAACCGAGCAGTGCAGGAGTGAATGCTCTGAGGACACTCGATTAAAAATGTTGACTATAAGTTCTAGTTTTGGTAGGACTTTTCTATGATGTTCATTATCATATATCGAGCTTAATGTGCCTTATCTACTATCTTGTATCTGTTTGATCCTTTTCAGCTCTGCAGTTTGTATCCTTATTTCCAGTCATAGGATATAGCTTGGGACATGTTCTTCCTCTTTATTTCTGTTCTCTACCATGTAGTAATACTTTATTTTGAGTATTTTTGGTGTCCTTTTCTTTTCCCAGTGTTTTTCTTTTCCTTTTCATATGTTTGAGCTATCCTGATTCATCATGAATCCTCTATTGGATTTTATAGTTATGTTCGGGATAAGATTGAATGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTCATAGATGGGTGATCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGATTTATCAGTATGATTGTCTATGCAGTATGATGTTGCTGTGGACAGTGTCTTTACTAATATTCACTGGATGATAATATATCGGTAAGGTTTATGGTCACGTTTAAATGTTTTTAGAAACTCAATTATGCTTTAGGGTTTGATATTTGACCTGATTAATCCATCTGGCCTATCCAAATTTTGTAATGTTTCGCCTCACCTGCAAGGAGATCTAGAGGGCCTTGATATATAGGTTTGACCCCACCTATGTTGATCAATTTTTATACTCGGCTGATGATGTATTTGAGAGGTACTGATATTAATGGCGAAGGCTGGTTTAAGAAAACTTAGCTGCAGGTTTGAACTTCGCATCAGAACATGAGTAGCCATGGTAAACATAAGTTTATAGTTTTGTGTATTGTTTGAAGGGGTGGATTTAAACTTACAGGTTATTATCCCAAACTTTTAGATCTATCTCTTGCTGCTTGATGTGCTGACTGACTTATTGTAGTTTTTGGGATACACATTGTTGCTGTGGTGCTTGATAGCAGATACCTCGATTGATGTACGATAGACATTGGCTTGACTGATTGATTCTGTAGCGGCCTGTTGCTGCCCTTGAGGGGTGAGGCTGGCAATGATGTTTGCAGTTGCTTTGACATTGCTTGCATTGATGTTTGCTTATAAAGTTCTGCATGTAAAATTGTATACCTCACGTCTAAAAGAAAATTTATTTAATAAAAATTCTACCATTAGTTTGCAACATTCAACGCCAGTGCACGTGTACAGTTTTGTGAGGGTTGGTCAGATTGCTATTTGTTTGGTTTATGCTGCTTTTTTCTGCAACTACTTGCTTTTGGGTCGAAAAATATTGCCCGTCTGATTTTGTCTATTGCTTTTTGTGTGTTCTCTAAAGTGATATTTTGAATGCCTCACTTGGCAGTAAGGCTTATATAACCAAAATTGTCAGTATTTTGTTGAGTATTCGTCCAAGTTTTGTTTTTTCTCCTAACAAAATGAGAAATACTAGCAAATATCGTGCATTTATTCCCAAATGCCTGTACACATGCACATATGTATATATTCCCTTCAGTTTGTCCTACGTAGGACATTTTCTTGCTAGTGAAGTGGTACGTCTTTTCTTTTCTTTTTTTTTGCTTTTTCCTTTTTCTCCTAGAAATGAACTTTTAAGACATGTGGTTCAGGGGCTTGGTGACAAACAGGTAAGCACTGAGGTCCTGATGGATATGCCATGTAGCAAAGCGAGCTGGATATGTAAATAACAATGATAAGTTTGATTGTGCTCGCCTTCTTGGTAAATATTTGGTAGTAACATACATAGAGTGGTAGATTTTCCGATTTGTGTTTGAGTTTGATTCTAAAATTAAGAATATTTTGTCGTAGGGTAGGTTTAGTCCAATTAATGGTTTATGCATCGTTTGTTTCCCATGAAGTTCTTACCATCATTAGATTTTAATGAATTCATATGTATTAATCTTAACTAGTAATGTCTATATGTTTAATAGGTTAATCTTCTGTTACAATGAACAACTTTGTGTTAATAAGTTACTATGATTAAGTTGTATAACGAGTAAAAATTATGATTTTATGAGTGGGTGTTATGTCTACTTCATCTAATTAAAACGTAGATTTGATATTACATCATATTTGGTAATTCAATTTTTTGATCTTTTAATATATGTAGAGACTAAATTACATGTCTAACTTCATCATCATCATTATTATTCTGTTTTAAAGTGCTCTTTGAAATGTTTGGTGGCATTATTTGGAAGTGCCAATGTTTGTACACACTTGGAGGCCTGTAGAAGATGAACTTACAAAGGAGAGTTGATTATTCAATGAATCAAATGGTGTCTCAATCTTTGATTCTTATACCTTTACTGAGTTCAATGAATCAAATGGCGAATCTGGTCGTTCAAATTTGTAGAAAGTTAAACAGGTTGACTTTTGTTCATTGTAAGCTTTGAACCATTCACTTTAGTTAATGGGTTTGATTCAAGCTTATGTGTTGGAGATCTGTTAAGTATCATTTTTCTCCATCAATTTGTGTGTTGTGTGTTGTATGTGTGTTTTAATGAGTTGATTTAGGTGTCCAGGATGAACATGATGGTGGTGATTGACCAAAACAACATATGAGAGAGGATCAAAAGTTTGAGCAAAGGAAAGGAGTTTGATTCTTTTTCGTTGTCTCGTTATCCTCTTCGAATGATTTGCTAGCCTAATGCTACAACTCTCGAGTCGATTAAGCGTCGGAGAGAATTAAATGAGGTATGAGAGCATGTGAGTTGATTGTTGATTTTGTTATGTAATTACATACTCTCATGAATCAAGTTATGTTCAATAAGTTGTTAGTGTTATATTATGAGGTCAAACTCGATGATGTCATGTGATAAATAAGATATTTATT

mRNA sequence

CGGCTCTTCCGGATAGTTCACTCGACGGATCTCTCTTCTTCTGTCCTCTGGAACCCTAACCCTAACCCTAATCTTCATCGTCCTACAAAAATGTCTCATTTTGGAAGGTCAGGTCCTCCAGATATTACAGACACCTACTCGCTTCTCGTGCTCAACATCACCTTCCGCACCACTGCTGATGACCTCTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTACGCAGATGAAGCTCAGAAAGCAGTGGACAGGCTAGATGGCACTGTGGTTGATGGACGAGAGATAACTGTCCAGTTTGCTAAATATGGTCCAAATGCTGAAAAGATTCAGAAAGGAAAAATCAGCGAACCATTTCCAAAGTCAAGACACAGGTCTAGAAGTCGTAGTCCACGGAGACGATATCGGGATGATTACAGAGATAGGGACTATAGGAGGAGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGGGGGAGAGAAAGAGAGAGGGAAAGAGACTATCGCAGGCGGAGCAGGAGCATCAGTCCCAGGCGGCCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGTAGATGAACGTAGAAATCGCAGTCGCAGCCATAGCCGAAGTCGTGGCCGTAGTCGTTCTGTTAATAGTGCTTCTCCTGGTAGACGAAGCCCTAGTCCTCAAAGGAGTCTGTCTCCTCGAAGGAGTCTTTCACCACGAAGGAGTCTTTCACCTCAAAGGAGTCTTTCACCTCGAAGGAGTCCATCTCCAAGGGGTGAAAGTCCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTCCTAGGAGTGTTTCACCACGAGGTCAACCTGCTGATTCACGAAGCCCATCTCCACAAAACTCGGATGTCGATAAGTGAATACTGATGGATGCAAGGAGAACTGTGGACATAACCGAGCAGTGCAGGAGTGAATGCTCTGAGGACACTCGATTAAAAATGTTGACTATAAGTTCTAGTTTTGGTAGGACTTTTCTATGATGTTCATTATCATATATCGAGCTTAATGTGCCTTATCTACTATCTTGTATCTGTTTGATCCTTTTCAGCTCTGCAGTTTGTATCCTTATTTCCAGTCATAGGATATAGCTTGGGACATGTTCTTCCTCTTTATTTCTGTTCTCTACCATGTAGTAATACTTTATTTTGAGTATTTTTGGTGTCCTTTTCTTTTCCCAGTGTTTTTCTTTTCCTTTTCATATGTTTGAGCTATCCTGATTCATCATGAATCCTCTATTGGATTTTATAGTTATGTTCGGGATAAGATTGAATGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTGTTTCTATGTCATAGATGGGTGATCGTGACTTTGATGCTGGTTGCAGCAGTTTGCTGATTTATCAGTATGATTGTCTATGCAGTATGATGTTGCTGTGGACAGTGTCTTTACTAATATTCACTGGATGATAATATATCGTTTTGTAATGTTTCGCCTCACCTGCAAGGAGATCTAGAGGGCCTTGATATATAGGTTTGACCCCACCTATGTTGATCAATTTTTATACTCGGCTGATGATGTATTTGAGAGGTACTGATATTAATGGCGAAGGCTGGTTTAAGAAAACTTAGCTGCAGGTTTGAACTTCGCATCAGAACATGAGTAGCCATGGTAAACATAAGTTTATAGTTTTGTGTATTGTTTGAAGGGGTGGATTTAAACTTACAGGTTATTATCCCAAACTTTTAGATCTATCTCTTGCTGCTTGATGTGCTGACTGACTTATTGTAGTTTTTGGGATACACATTGTTGCTGTGGTGCTTGATAGCAGATACCTCGATTGATGTACGATAGACATTGGCTTGACTGATTGATTCTGTAGCGGCCTGTTGCTGCCCTTGAGGGGTGAGGCTGGCAATGATGTTTGCAGTTGCTTTGACATTGCTTGCATTGATGTTTGCTTATAAAGTTCTGCATGTAAAATTGTATACCTCACGTCTAAAAGAAAATTTATTTAATAAAAATTCTACCATTAGTTTGCAACATTCAACGCCAGTGCACGTGTACAGTTTTGTGAGGGTTGGTCAGATTGCTATTTGTTTGGTTTATGCTGCTTTTTTCTGCAACTACTTGCTTTTGGGTCGAAAAATATTGCCCGTCTGATTTTGTCTATTGCTTTTTGTGTGTTCTCTAAAGTGATATTTTGAATGCCTCACTTGGCAGTAAGGCTTATATAACCAAAATTGTCAGTATTTTGTTGAGTATTCGTCCAAGTTTTGTTTTTTCTCCTAACAAAATGAGAAATACTAGCAAATATCGTGCATTTATTCCCAAATGCCTGTACACATGCACATATGTATATATTCCCTTCAGTTTGTCCTACGTAGGACATTTTCTTGCTAGTGAAGTGGTACGTCTTTTCTTTTCTTTTTTTTTGCTTTTTCCTTTTTCTCCTAGAAATGAACTTTTAAGACATGTGGTTCAGGGGCTTGGTGACAAACAGGTAAGCACTGAGGTCCTGATGGATATGCCATGTAGCAAAGCGAGCTGGATATGTAAATAACAATGATAAGTTTGATTGTGCTCGCCTTCTTGGTAAATATTTGGTAGTAACATACATAGAGTGGTAGATTTTCCGATTTGTGTTTGAGTTTGATTCTAAAATTAAGAATATTTTGTCGTAGGGTAGGTTTAGTCCAATTAATGGTTTATGCATCGTTTGTTTCCCATGAAGTTCTTACCATCATTAGATTTTAATGAATTCATATGTATTAATCTTAACTAGTAATGTCTATATGTTTAATAGGTTAATCTTCTGTTACAATGAACAACTTTGTGTTAATAAGTTACTATGATTAAGTTGTATAACGAGTAAAAATTATGATTTTATGAGTGGGTGTTATGTCTACTTCATCTAATTAAAACGTAGATTTGATATTACATCATATTTGGTAATTCAATTTTTTGATCTTTTAATATATGTAGAGACTAAATTACATGTCTAACTTCATCATCATCATTATTATTCTGTTTTAAAGTGCTCTTTGAAATGTTTGGTGGCATTATTTGGAAGTGCCAATGTTTGTACACACTTGGAGGCCTGTAGAAGATGAACTTACAAAGGAGAGTTGATTATTCAATGAATCAAATGGTGTCTCAATCTTTGATTCTTATACCTTTACTGAGTTCAATGAATCAAATGGCGAATCTGGTCGTTCAAATTTGTAGAAAGTTAAACAGGTTGACTTTTGTTCATTGTAAGCTTTGAACCATTCACTTTAGTTAATGGGTTTGATTCAAGCTTATGTGTTGGAGATCTGTTAAGTATCATTTTTCTCCATCAATTTGTGTGTTGTGTGTTGTATGTGTGTTTTAATGAGTTGATTTAGGTGTCCAGGATGAACATGATGGTGGTGATTGACCAAAACAACATATGAGAGAGGATCAAAAGTTTGAGCAAAGGAAAGGAGTTTGATTCTTTTTCGTTGTCTCGTTATCCTCTTCGAATGATTTGCTAGCCTAATGCTACAACTCTCGAGTCGATTAAGCGTCGGAGAGAATTAAATGAGGTATGAGAGCATGTGAGTTGATTGTTGATTTTGTTATGTAATTACATACTCTCATGAATCAAGTTATGTTCAATAAGTTGTTAGTGTTATATTATGAGGTCAAACTCGATGATGTCATGTGATAAATAAGATATTTATT

Coding sequence (CDS)

ATGTCTCATTTTGGAAGGTCAGGTCCTCCAGATATTACAGACACCTACTCGCTTCTCGTGCTCAACATCACCTTCCGCACCACTGCTGATGACCTCTACCCGCTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTACGCAGATGAAGCTCAGAAAGCAGTGGACAGGCTAGATGGCACTGTGGTTGATGGACGAGAGATAACTGTCCAGTTTGCTAAATATGGTCCAAATGCTGAAAAGATTCAGAAAGGAAAAATCAGCGAACCATTTCCAAAGTCAAGACACAGGTCTAGAAGTCGTAGTCCACGGAGACGATATCGGGATGATTACAGAGATAGGGACTATAGGAGGAGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGGGGGAGAGAAAGAGAGAGGGAAAGAGACTATCGCAGGCGGAGCAGGAGCATCAGTCCCAGGCGGCCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGTAGATGAACGTAGAAATCGCAGTCGCAGCCATAGCCGAAGTCGTGGCCGTAGTCGTTCTGTTAATAGTGCTTCTCCTGGTAGACGAAGCCCTAGTCCTCAAAGGAGTCTGTCTCCTCGAAGGAGTCTTTCACCACGAAGGAGTCTTTCACCTCAAAGGAGTCTTTCACCTCGAAGGAGTCCATCTCCAAGGGGTGAAAGTCCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTCCTAGGAGTGTTTCACCACGAGGTCAACCTGCTGATTCACGAAGCCCATCTCCACAAAACTCGGATGTCGATAAGTGA

Protein sequence

MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK

Homology

[Close]

BLAST of Carg26455 vs. NCBI nr
Match: KAG7022543.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 535.8 bits (1379), Expect = 2.3e-148
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSP 240
           SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSP
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSP 240

Query: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 294
           QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

[Close]

BLAST of Carg26455 vs. NCBI nr
Match: XP_022927926.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 534.3 bits (1375), Expect = 6.8e-148
Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSP 240
           SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSP+RSLSPRRSLSPRRSLSP
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 294
           QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

[Close]

BLAST of Carg26455 vs. NCBI nr
Match: XP_023529917.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 523.9 bits (1348), Expect = 9.2e-145
Identity = 291/305 (95.41%), Postives = 292/305 (95.74%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSP------------SPQRSLSP 240
           SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSP            SP+RSLSP
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 RRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQN 294
           RRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQP DSRSPSPQN
Sbjct: 241 RRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPVDSRSPSPQN 300

[Close]

BLAST of Carg26455 vs. NCBI nr
Match: XP_022988862.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita maxima])

HSP 1 Score: 520.8 bits (1340), Expect = 7.8e-144
Identity = 289/299 (96.66%), Postives = 292/299 (97.66%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRD+YRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDNYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPR----- 240
           SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSP+RSLSPRRSLSPR     
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 -RSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 294
            RSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQ ADSRSPSPQNSDV+K
Sbjct: 241 QRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQSADSRSPSPQNSDVNK 299

[Close]

BLAST of Carg26455 vs. NCBI nr
Match: XP_008455209.1 (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo])

HSP 1 Score: 451.8 bits (1161), Expect = 4.4e-123
Identity = 259/293 (88.40%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSL 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSP            SPRRS 
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSP------------SPRRSP 240

Query: 241 SPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRGQPADSRSPSPQNSD 291
           SP+RSLSPRRSPSPR ESPERNG+ GGRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Carg26455 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 9.1e-71
Identity = 194/315 (61.59%), Postives = 218/315 (69.21%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAEKI KG++ EP PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRE 180
                               RSRSPRRR RDDYR++DYR+RSRSRS        DRR R 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS-------YDRRERH 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGR 240
            E++RD+RRR+RS   R  SPD  K R RGRY +E R+ SRS S S  R RS  S+SP +
Sbjct: 181 EEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSPQK 240

Query: 241 RSPSPQRSLSP-----RRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSV 287
            SP+  R +SP      RS SPRRSLSP+     + SPS +  SPER  +  RSP+P S 
Sbjct: 241 TSPA--REVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSP 299

[Close]

BLAST of Carg26455 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-26
Identity = 110/253 (43.48%), Postives = 138/253 (54.55%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAEKIQKGKISEPFPKSRHRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G     +  S +  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYS 183
           PRR           RRRSRSRSRS        R R R R R  R +SRS   R  S   S
Sbjct: 123 PRR-----------RRRSRSRSRS--------RSRSRSRSRYSRSKSRS-RTRSRSRSTS 182

Query: 184 KGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSPQ 243
           K R   R   +  + SRS SRSR RSRS        RSP P          S R S S  
Sbjct: 183 KSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPP---------TSKRESNSRS 217

Query: 244 RSLSPRRSPSPRG 255
           RS SP +SP   G
Sbjct: 243 RSKSPPKSPEEEG 217

[Close]

BLAST of Carg26455 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-26
Identity = 109/253 (43.08%), Postives = 138/253 (54.55%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAEKIQKGKISEPFPKSRHRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G     +    +  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYS 183
           PRR           RRRSRSRSRS        R R R R R  R +SRS   R  S   S
Sbjct: 123 PRR-----------RRRSRSRSRS--------RSRSRSRSRYSRSKSRS-RTRSRSRSTS 182

Query: 184 KGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSPQ 243
           K R   R   +  + SRS SRSR RSRS        RSP P         +S R S S  
Sbjct: 183 KSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPP---------VSKRESKSRS 217

Query: 244 RSLSPRRSPSPRG 255
           RS SP +SP   G
Sbjct: 243 RSKSPPKSPEEEG 217

[Close]

BLAST of Carg26455 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-26
Identity = 109/253 (43.08%), Postives = 138/253 (54.55%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAEKIQKGKISEPFPKSRHRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G     +    +  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYS 183
           PRR           RRRSRSRSRS        R R R R R  R +SRS   R  S   S
Sbjct: 123 PRR-----------RRRSRSRSRS--------RSRSRSRSRYSRSKSRS-RTRSRSRSTS 182

Query: 184 KGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSPQ 243
           K R   R   +  + SRS SRSR RSRS        RSP P         +S R S S  
Sbjct: 183 KSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPP---------VSKRESKSRS 217

Query: 244 RSLSPRRSPSPRG 255
           RS SP +SP   G
Sbjct: 243 RSKSPPKSPEEEG 217

[Close]

BLAST of Carg26455 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-26
Identity = 109/253 (43.08%), Postives = 138/253 (54.55%), Query Frame = 0


Query: 4   FGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAEKIQKGKISEPFPKSRHRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++   ++G     +    +  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYS 183
           PRR           RRRSRSRSRS        R R R R R  R +SRS   R  S   S
Sbjct: 123 PRR-----------RRRSRSRSRS--------RSRSRSRSRYSRSKSRS-RTRSRSRSTS 182

Query: 184 KGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSPQ 243
           K R   R   +  + SRS SRSR RSRS        RSP P         +S R S S  
Sbjct: 183 KSRSARRSKSKSSSVSRSRSRSRSRSRS--------RSPPP---------VSKRESKSRS 217

Query: 244 RSLSPRRSPSPRG 255
           RS SP +SP   G
Sbjct: 243 RSKSPPKSPEEEG 217

[Close]

BLAST of Carg26455 vs. ExPASy TrEMBL
Match: A0A6J1EIV3 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=LOC111434683 PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.3e-148
Identity = 292/293 (99.66%), Postives = 293/293 (100.00%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSP 240
           SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSP+RSLSPRRSLSPRRSLSP
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 294
           QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

[Close]

BLAST of Carg26455 vs. ExPASy TrEMBL
Match: A0A6J1JE82 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LOC111486086 PE=4 SV=1)

HSP 1 Score: 520.8 bits (1340), Expect = 3.8e-144
Identity = 289/299 (96.66%), Postives = 292/299 (97.66%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRD+YRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDNYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPR----- 240
           SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSP+RSLSPRRSLSPR     
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 -RSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 294
            RSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQ ADSRSPSPQNSDV+K
Sbjct: 241 QRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQSADSRSPSPQNSDVNK 299

[Close]

BLAST of Carg26455 vs. ExPASy TrEMBL
Match: A0A1S3C0I4 (serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC103495427 PE=4 SV=1)

HSP 1 Score: 451.8 bits (1161), Expect = 2.1e-123
Identity = 259/293 (88.40%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSL 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSP            SPRRS 
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSP------------SPRRSP 240

Query: 241 SPQRSLSPRRSPSPRGESPERNGD-GGRSPTPRSVSPRGQPADSRSPSPQNSD 291
           SP+RSLSPRRSPSPR ESPERNG+ GGRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Carg26455 vs. ExPASy TrEMBL
Match: A0A0A0K7C0 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 9.0e-122
Identity = 255/293 (87.03%), Postives = 269/293 (91.81%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRR  RSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSL 240
           DYSKGRGRGRY DERR+RS S SRSRGRSRSV+S SPGRRSP            SPRRS 
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSP------------SPRRSP 240

Query: 241 SPQRSLSPRRSPSPRGESPERNGDG-GRSPTPRSVSPRGQPADSRSPSPQNSD 291
           SP+RSLSPRRSPSPR ESPERNG+G GRSPT RSVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPRRSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Carg26455 vs. ExPASy TrEMBL
Match: A0A6J1CKN2 (serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC111012175 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 9.0e-122
Identity = 257/297 (86.53%), Postives = 266/297 (89.56%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120
           FVRYKYADEAQKAV+RLDGTVVDGREITVQFAKYGPNAE+I KGKISE F K R+RSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFTKPRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRYRDD RDRDYRR  RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDNRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYVDERRNRSRSHSR--SRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRR 240
           DYSKGRGRGRY DERR+RSRS SR  SRG+SRSV+SASPG                  RR
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSCSRSQSRGQSRSVDSASPG------------------RR 240

Query: 241 SLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 294
           S SP+RSLSP+RSPSPRGESP RNGDGGR+PTPRSVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 SASPRRSLSPQRSPSPRGESPVRNGDGGRTPTPRSVSPRGQPADSRSPSPQNSDVDK 279

[Close]

BLAST of Carg26455 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 268.5 bits (685), Expect = 6.5e-72
Identity = 194/315 (61.59%), Postives = 218/315 (69.21%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAEKI KG++ EP PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRE 180
                               RSRSPRRR RDDYR++DYR+RSRSRS        DRR R 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS-------YDRRERH 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGR 240
            E++RD+RRR+RS   R  SPD  K R RGRY +E R+ SRS S S  R RS  S+SP +
Sbjct: 181 EEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSPQK 240

Query: 241 RSPSPQRSLSP-----RRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSV 287
            SP+  R +SP      RS SPRRSLSP+     + SPS +  SPER  +  RSP+P S 
Sbjct: 241 TSPA--REVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSP 299

[Close]

BLAST of Carg26455 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 268.5 bits (685), Expect = 6.5e-72
Identity = 194/315 (61.59%), Postives = 218/315 (69.21%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAEKI KG++ EP PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRE 180
                               RSRSPRRR RDDYR++DYR+RSRSRS        DRR R 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS-------YDRRERH 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGR 240
            E++RD+RRR+RS   R  SPD  K R RGRY +E R+ SRS S S  R RS  S+SP +
Sbjct: 181 EEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPAR-RSPRSSSPQK 240

Query: 241 RSPSPQRSLSP-----RRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSV 287
            SP+  R +SP      RS SPRRSLSP+     + SPS +  SPER  +  RSP+P S 
Sbjct: 241 TSPA--REVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSP 299

[Close]

BLAST of Carg26455 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 85.9 bits (211), Expect = 5.9e-17
Identity = 113/284 (39.79%), Postives = 142/284 (50.00%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
           SLLV N+      +DL   F ++G V DI++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSRSPRRRYRDDYRDRDYR 136
           +DG ++ GRE+TV FA+                     +R +    R R R   R RD R
Sbjct: 97  MDGYLLLGRELTVVFAE--------------------ENRKKPTEMRARERGGGRFRD-R 156

Query: 137 RRSRSRSRSLDRSDRDRRGRERERERDY------RRRSRSISPRRPSPDYSKGRGRGRYV 196
           RR+  R  S  RS   RRGR R R  DY      R   RSISPR    D  +   R    
Sbjct: 157 RRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPAS 216

Query: 197 DERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSL--SPRRSLSP----RRSLSPQRSL 256
           D   +R RS +  RG+SRS+        SPSP+RS+  SPRRS SP     RS+SP+RS+
Sbjct: 217 D--GSRGRSLTPVRGKSRSL--------SPSPRRSISRSPRRSRSPSPKRNRSVSPRRSI 276

Query: 257 --SPRRSPSPRGESPERNGDGGRSPTPRSVSPR-GQPADSRSPS 286
             SPRRS SPR        +  RS   RS SP  GQ  + RSPS
Sbjct: 277 SRSPRRSRSPRRSRRSYTPEPARS---RSQSPHGGQYDEDRSPS 286

[Close]

BLAST of Carg26455 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-15
Identity = 114/296 (38.51%), Postives = 145/296 (48.99%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F ++G V DI++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSRSPRR 136
               +A  A   +DG ++ GRE+TV FA+   N +K            +  R+R R    
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAE--ENRKK-----------PTEMRARERGGGS 156

Query: 137 RYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDY------RRRSRSISPRRPSP 196
           R+RD       RRR+  R  S  RS   RRGR R R  DY      R   RSISPR    
Sbjct: 157 RFRD-------RRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERY 216

Query: 197 DYSKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSL--SPRRSLSP-- 256
           D  +   R    D   +R RS +  RG+SRS+        SPSP+RS+  SPRRS SP  
Sbjct: 217 DGRRSYSRSPASD--GSRGRSLTPVRGKSRSL--------SPSPRRSISRSPRRSRSPSP 276

Query: 257 --RRSLSPQRSL--SPRRSPSPRGESPERNGDGGRSPTPRSVSPR-GQPADSRSPS 286
              RS+SP+RS+  SPRRS SPR        +  RS   RS SP  GQ  + RSPS
Sbjct: 277 KRNRSVSPRRSISRSPRRSRSPRRSRRSYTPEPARS---RSQSPHGGQYDEDRSPS 299

[Close]

BLAST of Carg26455 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-10
Identity = 109/295 (36.95%), Postives = 132/295 (44.75%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
           SL V  ++ R T  DL   F K GKV D+ +  D  T +SRGF F+  K   +A + +  
Sbjct: 76  SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135

Query: 77  LDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSRSPRRRYRDDYRDRDYR 136
           LD +V+ GR ITV+ A+            +     + RH+S S SPRR            
Sbjct: 136 LDHSVLQGRVITVEKARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCS------- 195

Query: 137 RRSRSRSRSLDRS-----DRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYVD 196
            RSRSRS S DR         RRGR       YRRR      R PSPD    R R R   
Sbjct: 196 -RSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFYSPSRSPSPDDRYNRRRDRSYS 255

Query: 197 ---ERRNRSRSHSRS-RGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSP-----QR 256
               RR+RSRS+SR+ R R RS       RR  S  RS SPR   +  RS SP      R
Sbjct: 256 PYYRRRDRSRSYSRNCRARDRSPYYM---RRYRSRSRSYSPRYR-ARDRSCSPYYRGRDR 315

Query: 257 SLSPRRSPSPRGESPERN------------GDGGRSPTPRSVSPRGQPADSRSPS 286
           S SP      R  SPE                GGRS + RS+SPR    +SRS S
Sbjct: 316 SYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRSMS-RSISPRKGRKESRSKS 357

The following BLAST results are available for this feature:

BLAST of Carg26455 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022543.1	2.3e-148	100.00	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022927926.1	6.8e-148	99.66	serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771....	[more]
XP_023529917.1	9.2e-145	95.41	serine/arginine-rich splicing factor SC35-like [Cucurbita pepo subsp. pepo]	[more]
XP_022988862.1	7.8e-144	96.66	serine/arginine-rich splicing factor SC35-like [Cucurbita maxima]	[more]
XP_008455209.1	4.4e-123	88.40	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo]	[more]

BLAST of Carg26455 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	9.1e-71	61.59	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	1.8e-26	43.48	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	4.0e-26	43.08	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	4.0e-26	43.08	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	4.0e-26	43.08	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of Carg26455 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIV3	3.3e-148	99.66	serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JE82	3.8e-144	96.66	serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3C0I4	2.1e-123	88.40	serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC10349542...	[more]
A0A0A0K7C0	9.0e-122	87.03	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV...	[more]
A0A6J1CKN2	9.0e-122	86.53	serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of Carg26455 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	6.5e-72	61.59	ortholog of human splicing factor SC35	[more]
AT5G64200.2	6.5e-72	61.59	ortholog of human splicing factor SC35	[more]
AT1G55310.1	5.9e-17	39.79	SC35-like splicing factor 33	[more]
AT1G55310.3	3.3e-15	38.51	SC35-like splicing factor 33	[more]
AT1G07350.1	1.1e-10	36.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..88 e-value: 2.3E-20 score: 72.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.058443
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 17..90 e-value: 0.0066 score: 25.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..105 e-value: 3.2E-27 score: 97.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..198
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..292
None	No IPR available	PANTHER	PTHR23147:SF156	SERINE/ARGININE-RICH SPLICING FACTOR SC35	coord: 1..292
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26455-RA	Carg26455-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding