Carg26388 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26388
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein XRI1-like
Location	Carg_Chr19: 1162101 .. 1164569 (-)
RNA-Seq Expression	Carg26388
Synteny	Carg26388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTACTCGGTTAGTGGGCGCTTTTCTCCTTCTTCTCCGCCCCTAAGCCCCCATTATCTAGCACACCACAACTCAAACATCGGGGGACCGAACTGGATTTCTCTTCAAATGCTTCTTTTTTGATCGCAGTCAATAGCAGTTCACGAGTGTTGGTCTTGTTTTACTGTTCTAGCCATGGATGATTGCGCCAAAAACAAGTAAGATCGCTGTTCTTCTGCTCTATCTGTTTGTTTATGTGATTGGTTTGGTTTCTCCGTGTTTTTTTTTTGTGTTTTGGAAGATCTAGCTGTTCCTGTTGATTCCTTGTTTTGGGGGAAGCTGTTTTTTGGGGTTTTATTGTAATGGTTCTTCGATTTGTTCTGATTTTCTTGCGCTGTAATCGGTAATTTGAAGTCGAAATGGAGTGGAGGATGAGGCTGTTGGATTTAATTTAAGTAGCGGATCATTGACAGCTAATGACTTGTTATTATTGTTTATAGCGTTCTTGCAGTCTTCCGAGTTGTTTAATTATTGTGTTAATTTGTTGAGAAAATCCTCAAGAAGTATGGTTTAATTTGCTTCTTTCAGTAGTTTGACTTGCTTGGTTGAGATTGAATCAATTGTTTTCCATTTCTATTATGGTAATAAGCGTTGCATGTGCTTAATCTTTCACTTTTGTTGCTTTTATGTGTGATTTTATCAGTGATTCTTGGAATTGGGAAGGAGATGGGTATACCATTCAGAAGGATGCGGATTTAGGTGAGTAATTTTCTTGTTTACTTTGTTTGTTATGTGTTATATGTGAGATCCCACGTTAGTGGAAGAGAGGAACGAAACATTCCTTATAAGGGTGTGGAAACTTCTATCTAGTAGACGTGTTTTAAAACCTTGAGGGGAAGTCTGGAAGGGTAAGGTCAATGAGGACAATATCTGCTAGTGGTGAGCTTGAGTTGTTACATTATTGGTGAGATTCCACGTTAGTTGGAGAGAGGAACGAAGCATTCCTTATAAAGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCTGGAGGGGAAGTTCGGAAGGGAATGCTCAAAGAGGATAATATCTGCTAATAATGCGCTTGAGTTGTTATATTCTCTGATCACATTGTGTTAAAATTCATCCTTGGGACCTTTTTTGTTTTCATTGTCATGAGTAGAGATATCAGAATTCCTGTGGGACGGGGTATCCGAAAATGGAAATCTTTCGTACGTGTTTGATGAAACAACTCCTGTTAAAGCTTGTGGGGACTTGGCATTCAATGTTTCATATAGTGGTAAGAACATTACACTTGATTTTAATCTAAGGGGTCGTTGGTTCTTTGTCATTTCTAATGTGGAGAAGTGGGTTTCAGATGACAGGAACAAGAAATCAGAAGAGTCCAGGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAACTTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACATGTAAGTGATATGCACTTCCTGGTGTATGGTTGTAAGAATTCGGATCGACTTCAGTCAAACATGTCAATTCTATAAGTTGTTCTATCTTATTGCTTGTAGTTGCAATAAGTTTGCTTTGCTTTTGATTGAGTTTGCTTGAAAGAATATATAACGTATTACATAGTTTAAGAGAGAGAATCAATCTTCAGTTGAGTAGTATGCTCGTTTCACGAGGTTCTACCATAGTAGGGTGCAATCATACTCAAAATCTGAGTTTGATCCTGGCTTAGAAGGGATGCTAGCTATATGCTTAACACATGAAAGTCGAATGTAGTTTAATAAAAACCTGTGCCAGCACCTCGGATGCAAAACGCTTCTTTATAGGAGAGTCAAGGGCGCTTCCGCGGGCGATTCTAAGTTGCTCCAAGGAGCTTATTGTCGATCTTTAGTGTTTGGGAGATATACTTTTAACAAGGAGTTCCGTTGATAGGAGCTCCTTTTCGAGCTTACGGTCCACTTTTTAAAAAATCAGGCTTCTCCTTTGTCTTTTATTTCAGCACTTGTTTGCTGTCGATCCTCTTAGATGCAAAAACTTAAGTTCTCTGCTATGATGTTAGACTTGTCGATAGATACAAGTATACTGTAGAACTTGTATGAAATTTGTTGTGGCCTTTTGTTCTATATCCAGAAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTCAACTCTCAGGTTTGTCTCAAACACGATACTTTATACGGGATTCCCGAGTGCTCTTGGATTTGTCTAATCATATAATGTATTTGCCTTAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCACTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGATTTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATTAA

mRNA sequence

AGTTACTCGGTTAGTGGGCGCTTTTCTCCTTCTTCTCCGCCCCTAAGCCCCCATTATCTAGCACACCACAACTCAAACATCGGGGGACCGAACTGGATTTCTCTTCAAATGCTTCTTTTTTGATCGCAGTCAATAGCAGTTCACGAGTGTTGGTCTTGTTTTACTGTTCTAGCCATGGATGATTGCGCCAAAAACAAGAACAAGAAATCAGAAGAGTCCAGGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAACTTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACATAAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTCAACTCTCAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCACTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGATTTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATTAA

Coding sequence (CDS)

ATGGATGATTGCGCCAAAAACAAGAACAAGAAATCAGAAGAGTCCAGGGAGACTCAATCACAGGCAAAGAGACGTCGGATGTTACAGTTTACTGCACAAGATATGGAAACTTCCCTATGCAATGAAGATTTATCTTCTAGATTCCTAAAAGCACATAAGAAGGATGTTTCCGGTCCAGCTGCTCTCCCGGAAGCTTCATACGGGATTCCCGAGTGTTCTCAACTCTCAGATAATGTGTCCACTTTCTGTCATGAGAATTTGGATCACTCACCTGAAGGTTGGATTGCTGAATGCTTTACTGATGCTGATATGCTTTGCAGCCCTGAGGATTTGTATGTGTCTTGTTTGCATCCGAATTGTTTTGCTTACAATTATTAA

Protein sequence

MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDLYVSCLHPNCFAYNY

Homology

[Close]

BLAST of Carg26388 vs. NCBI nr
Match: KAG7011331.1 (Protein XRI1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.4 bits (664), Expect = 8.1e-66
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPA 60
           MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPA
Sbjct: 1   MDDCAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPA 60

Query: 61  ALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDLYVSCLHPNC 120
           ALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDLYVSCLHPNC
Sbjct: 61  ALPEASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDLYVSCLHPNC 120

Query: 121 FAYNY 126
           FAYNY
Sbjct: 121 FAYNY 125

[Close]

BLAST of Carg26388 vs. NCBI nr
Match: KAG6571588.1 (Protein XRI1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS
Sbjct: 117 DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 176

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL
Sbjct: 177 YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 221

[Close]

BLAST of Carg26388 vs. NCBI nr
Match: XP_022963649.1 (protein XRI1-like [Cucurbita moschata])

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-50
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL
Sbjct: 127 YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 171

[Close]

BLAST of Carg26388 vs. NCBI nr
Match: XP_023511506.1 (protein XRI1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-49
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECSQLSDNVSTFCHENLDHSPEGWIAEC TDADMLCSPEDL
Sbjct: 127 YGIPECSQLSDNVSTFCHENLDHSPEGWIAECLTDADMLCSPEDL 171

[Close]

BLAST of Carg26388 vs. NCBI nr
Match: XP_022967302.1 (protein XRI1-like [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECS LSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL
Sbjct: 127 YGIPECSLLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 171

[Close]

BLAST of Carg26388 vs. ExPASy TrEMBL
Match: A0A6J1HKT8 (protein XRI1-like OS=Cucurbita moschata OX=3662 GN=LOC111463916 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL
Sbjct: 127 YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 171

[Close]

BLAST of Carg26388 vs. ExPASy TrEMBL
Match: A0A6J1HQF7 (protein XRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111466864 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.7e-50
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 7   NKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALPEAS 66
           ++NKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVS PAALPEAS
Sbjct: 67  DRNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSSPAALPEAS 126

Query: 67  YGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           YGIPECS LSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL
Sbjct: 127 YGIPECSLLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 171

[Close]

BLAST of Carg26388 vs. ExPASy TrEMBL
Match: A0A5A7SGS7 (Protein XRI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00300 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.7e-41
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL 
Sbjct: 71  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSLCREDLSSRFLKSHNKDVSSLAALA 130

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 131 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 178

[Close]

BLAST of Carg26388 vs. ExPASy TrEMBL
Match: A0A1S3CH27 (protein XRI1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.7e-41
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL 
Sbjct: 65  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSLCREDLSSRFLKSHNKDVSSLAALA 124

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 125 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 172

[Close]

BLAST of Carg26388 vs. ExPASy TrEMBL
Match: A0A1S3CFL6 (protein XRI1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.7e-41
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = 0


Query: 4   CAKNKNKKSEESRETQSQAKRRRMLQFTAQDMETSLCNEDLSSRFLKAHKKDVSGPAALP 63
           C+ ++NKKSEESRET SQAKRRRMLQFTAQD+ETSLC EDLSSRFLK+H KDVS  AAL 
Sbjct: 64  CSDDRNKKSEESRETHSQAKRRRMLQFTAQDLETSLCREDLSSRFLKSHNKDVSSLAALA 123

Query: 64  EASYGIPECSQLSDNVSTFCHENLDHSPEGWIAECFTDADMLCSPEDL 112
           E SYGIPECS L+DNV   CHENLDHSPEGWIAEC  DADM CSPEDL
Sbjct: 124 EVSYGIPECSGLADNVLISCHENLDHSPEGWIAECLNDADMHCSPEDL 171

The following BLAST results are available for this feature:

BLAST of Carg26388 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011331.1	8.1e-66	100.00	Protein XRI1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6571588.1	4.3e-51	98.10	Protein XRI1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022963649.1	2.1e-50	97.14	protein XRI1-like [Cucurbita moschata]	[more]
XP_023511506.1	1.1e-49	96.19	protein XRI1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022967302.1	1.4e-49	96.19	protein XRI1-like [Cucurbita maxima]	[more]

BLAST of Carg26388 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg26388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKT8	1.0e-50	97.14	protein XRI1-like OS=Cucurbita moschata OX=3662 GN=LOC111463916 PE=4 SV=1	[more]
A0A6J1HQF7	6.7e-50	96.19	protein XRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111466864 PE=4 SV=1	[more]
A0A5A7SGS7	5.7e-41	80.56	Protein XRI1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CH27	5.7e-41	80.56	protein XRI1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1	[more]
A0A1S3CFL6	5.7e-41	80.56	protein XRI1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500376 PE=4 SV=1	[more]

BLAST of Carg26388 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR33385:SF15	INDUCED TRANSCRIPT PROTEIN, PUTATIVE-RELATED	coord: 6..114
IPR039933	Protein XRI1	PANTHER	PTHR33385	PROTEIN XRI1	coord: 6..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26388-RA	Carg26388-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0007143	female meiotic nuclear division
biological_process	GO:0007140	male meiotic nuclear division
biological_process	GO:0009555	pollen development
biological_process	GO:0010165	response to X-ray
cellular_component	GO:0005634	nucleus