Carg26370 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26370
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Geranylgeranyl pyrophosphate synthase 4
Location	Carg_Chr11: 11381608 .. 11383843 (-)
RNA-Seq Expression	Carg26370
Synteny	Carg26370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTTTCGATCATGGCGGCATCCTCTCTCAGAATGAATTTTGGAACAAAGGCTTCAATTCGATGCTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGGTTTCTTCTCAAGCTAAATCGATTCAGTTTGATTTGAAAACGTACTGGAAAAAGCTGATTCTCGAGATCAACCAGAAGCTGGATGAAGCTGTTCCCATTCAGTACCCCGACCAGATCTACGAAGCTATGCGTTACTCGGTTTTGGCTGAAGGAGCCAAGCGAGCTCCTCCGGTTATGTGCGTCGCTGCCTGTGAGCTATTCGGCGTCGACCGCCTCGCTGCATTCCCTACCGCCTGTGCTCTCGAAATGGTTATTTCTCATTCCTAATTTTACGTTTCTGGATTGAGATTCGCTTTAATTCTCGTGTTCTGTTATTTATTGGGATATTGACGAAGTTTGACTACAAATTGCTCGAATCGAATATGCACTTGCGGTTATGATTTCATGTTTGTGTACATTATGTTTGCTAGTTTCTGTAATAGTTCTTTCAATCGTCAATAAGTGGTAAGTTACTGAAACAGGCTGTTCATATCAATCTCCAGATGTGAATTAAACTTGTATGTATGAACAGCCAAGTTGATTTGGGAATTAGGTTGGACAAACTCGAGGGATGGGGGGAGGGGGGCGCAACATTTTAGGCTATAAAATACTGTTCAGTTCGCAGTCTGTTACATTATGCATTCTGGTTTATAGGTCAATGATTCAATACGTTTCAAAACGTGAGTTGATTTGGGAATTACACTTGCTAGGCTCTAAATGAGTGAAGGGTCGGATGGATAAATGTGAGAGAACCCTTCAAAGGACTGTGGTTGATAGAGAATTTGATAGAAAACATAAGGCGTACTCTGCTTGGAAGTGATTTAGATTCGTCATATTCAACACTTCAAAATCAATTTTGATTGGATGAAAAATCTGTTTAAGAGTATGAAATCAAACGTCAAATTGTTTTTGAATAATTATAGGCATGTTTTGAGGTGATTTTGAACATGAAAAAGGTGATTCTAATCCTTTCAAAATCACTTCCAAACTTGTTAGTAGTGTTGGAACATATTCTGTTTTATATACACTTTTCGAGTTATGCTTTACTTGGTTATGTATGCTCTCTTACCTTATACTATATTTGTGCACTTCTCTTTTTCTCGGTTTGGTTAAGGCACGTGCTTTTAATTAAGACATCAGAGGTTTGAATCTCCCTTCATCTCTCCATGTTGTTGAACTATTAAAAAAAACACCCAAATCCGAATTATGTACCTCCCATCGAATGAAAAACAAGTTATGGTGAGATGCAATGTGAGATCTAACATTCAAGAGTAAAATTAATCACTTTTGAAGACTTTTGAAGACAGTTTTAGCGTTTTAAGAATTGAGAGAGCTTATTGACTCTTTGCGATATCAAAGTCGATGCGGATAACATCATTTCCTTTGTAACAATATACTGCATGTTGCTAGATTATTCTTAATAGCTCTTGTCACATTTCAAACTAGTGTATTAAATTGATCACTGATCTTTTGGCAGGTTCATGCAGCTTCATTGATCCACGATGACCTTCCTTGCATGGATGACGATCCCTCACGTCGTGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCAATTCTCGCTGGTGATGCACTTTTTCCCCTTGGCTTTCAACACATTGTCTCACACACACCATTCGACCTCGTTCCCGAGTCCCGCTTGCTCCGTGTGGTTGCCGAGATTGCCAAAGCCGTTGGTTCCAGAGGCATGGCAGCAGGACAGTTTCTTGACCTCGAGGGAGGCCCCAACTCCATCGAATTTGTCCAAGAAAAGAAATTTGGTGAAATGAGCCAATGCTCCGCCGTGTGCGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGGTACAGAGATTGAGAAGGTACGGAAGAGCGGTCGGCGTGTTGTATCAGGTAGTAGACGATATTCGGAAAGAACAAGCAAAGAAACTCGATCAAACCGATGAGAGTAAGAAGAGAAAAGGGAAGAGCTATGTTGGAGTATATGGGATTGAGAAGGCTAAGGAGGTGGCAGAGGAGCTGAGGACTAAAGCTAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGACCGAGTGATGCCTTTGTACAGCTTTGTGGATTATGCTGCAGATATGAGTTTCAGTTTAGAAAGTTCAACTTGA

mRNA sequence

ATGGCATTTTCGATCATGGCGGCATCCTCTCTCAGAATGAATTTTGGAACAAAGGCTTCAATTCGATGCTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGGTTTCTTCTCAAGCTAAATCGATTCAGTTTGATTTGAAAACGTACTGGAAAAAGCTGATTCTCGAGATCAACCAGAAGCTGGATGAAGCTGTTCCCATTCAGTACCCCGACCAGATCTACGAAGCTATGCGTTACTCGGTTTTGGCTGAAGGAGCCAAGCGAGCTCCTCCGGTTATGTGCGTCGCTGCCTGTGAGCTATTCGGCGTCGACCGCCTCGCTGCATTCCCTACCGCCTGTGCTCTCGAAATGGTTCATGCAGCTTCATTGATCCACGATGACCTTCCTTGCATGGATGACGATCCCTCACGTCGTGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCAATTCTCGCTGGTGATGCACTTTTTCCCCTTGGCTTTCAACACATTGTCTCACACACACCATTCGACCTCGTTCCCGAGTCCCGCTTGCTCCGTGTGGTTGCCGAGATTGCCAAAGCCGTTGGTTCCAGAGGCATGGCAGCAGGACAGTTTCTTGACCTCGAGGGAGGCCCCAACTCCATCGAATTTGTCCAAGAAAAGAAATTTGGTGAAATGAGCCAATGCTCCGCCGTGTGCGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGGTACAGAGATTGAGAAGGTACGGAAGAGCGGTCGGCGTGTTGTATCAGGTAGTAGACGATATTCGGAAAGAACAAGCAAAGAAACTCGATCAAACCGATGAGAGTAAGAAGAGAAAAGGGAAGAGCTATGTTGGAGTATATGGGATTGAGAAGGCTAAGGAGGTGGCAGAGGAGCTGAGGACTAAAGCTAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGACCGAGTGATGCCTTTGTACAGCTTTGTGGATTATGCTGCAGATATGAGTTTCAGTTTAGAAAGTTCAACTTGA

Coding sequence (CDS)

ATGGCATTTTCGATCATGGCGGCATCCTCTCTCAGAATGAATTTTGGAACAAAGGCTTCAATTCGATGCTCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCGGTTTCTTCTCAAGCTAAATCGATTCAGTTTGATTTGAAAACGTACTGGAAAAAGCTGATTCTCGAGATCAACCAGAAGCTGGATGAAGCTGTTCCCATTCAGTACCCCGACCAGATCTACGAAGCTATGCGTTACTCGGTTTTGGCTGAAGGAGCCAAGCGAGCTCCTCCGGTTATGTGCGTCGCTGCCTGTGAGCTATTCGGCGTCGACCGCCTCGCTGCATTCCCTACCGCCTGTGCTCTCGAAATGGTTCATGCAGCTTCATTGATCCACGATGACCTTCCTTGCATGGATGACGATCCCTCACGTCGTGGCCAACCTTCAAACCATACAGTTTATGGTGTTGACATGGCAATTCTCGCTGGTGATGCACTTTTTCCCCTTGGCTTTCAACACATTGTCTCACACACACCATTCGACCTCGTTCCCGAGTCCCGCTTGCTCCGTGTGGTTGCCGAGATTGCCAAAGCCGTTGGTTCCAGAGGCATGGCAGCAGGACAGTTTCTTGACCTCGAGGGAGGCCCCAACTCCATCGAATTTGTCCAAGAAAAGAAATTTGGTGAAATGAGCCAATGCTCCGCCGTGTGCGGAGGACTTCTAGCTGGAGCAGAAGACCATGAGGTACAGAGATTGAGAAGGTACGGAAGAGCGGTCGGCGTGTTGTATCAGGTAGTAGACGATATTCGGAAAGAACAAGCAAAGAAACTCGATCAAACCGATGAGAGTAAGAAGAGAAAAGGGAAGAGCTATGTTGGAGTATATGGGATTGAGAAGGCTAAGGAGGTGGCAGAGGAGCTGAGGACTAAAGCTAAGAAGGAATTGGAAGGATTTGAGAAGTATGGAGACCGAGTGATGCCTTTGTACAGCTTTGTGGATTATGCTGCAGATATGAGTTTCAGTTTAGAAAGTTCAACTTGA

Protein sequence

MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVAEELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST

Homology

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BLAST of Carg26370 vs. NCBI nr
Match: KAG7022744.1 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 654.8 bits (1688), Expect = 4.0e-184
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI
Sbjct: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA
Sbjct: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA
Sbjct: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST
Sbjct: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 342

[Close]

BLAST of Carg26370 vs. NCBI nr
Match: KAG6589028.1 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 646.0 bits (1665), Expect = 1.9e-181
Identity = 338/342 (98.83%), Postives = 338/342 (98.83%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASSLRMNFGTKASIRC    SSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRC----SSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 91

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 92  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 151

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 152 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 211

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA
Sbjct: 212 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 271

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA
Sbjct: 272 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 331

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST
Sbjct: 332 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 369

[Close]

BLAST of Carg26370 vs. NCBI nr
Match: XP_022928137.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucurbita moschata])

HSP 1 Score: 642.9 bits (1657), Expect = 1.6e-180
Identity = 337/342 (98.54%), Postives = 337/342 (98.54%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASSLRMNFGTKASIRC   SSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRC---SSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 91

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAVPIQYPDQIYEAMRYSVLA GAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 92  NQKLDEAVPIQYPDQIYEAMRYSVLANGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 151

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 152 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 211

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA
Sbjct: 212 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 271

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA
Sbjct: 272 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 331

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAKKELEGFEKYGDRVMPLYSFVDYAAD SFSLESST
Sbjct: 332 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 370

[Close]

BLAST of Carg26370 vs. NCBI nr
Match: XP_023529740.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 640.6 bits (1651), Expect = 7.8e-180
Identity = 335/342 (97.95%), Postives = 335/342 (97.95%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASSLRMNFGTKASIRC     SSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRC-----SSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 91

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAVPIQYPDQIYEAMRYSVLA GAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 92  NQKLDEAVPIQYPDQIYEAMRYSVLANGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 151

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 152 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 211

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA
Sbjct: 212 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 271

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA
Sbjct: 272 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 331

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAKKELEGFEKYGDRVMPLYSFVDYAAD SFSLESST
Sbjct: 332 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 368

[Close]

BLAST of Carg26370 vs. NCBI nr
Match: XP_022989428.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Cucurbita maxima])

HSP 1 Score: 636.0 bits (1639), Expect = 1.9e-178
Identity = 333/342 (97.37%), Postives = 333/342 (97.37%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASSLRMNFGTKASIRC      SSSSSSSAVSSQAKSI FDLKTYWKKLILEI
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRC------SSSSSSSAVSSQAKSIHFDLKTYWKKLILEI 91

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 92  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 151

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 152 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 211

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA
Sbjct: 212 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 271

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYV VYGIEKAKEVA
Sbjct: 272 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVRVYGIEKAKEVA 331

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAKKELEGFEKYGDRVMPLYSFVDYAAD SFSLESST
Sbjct: 332 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 367

[Close]

BLAST of Carg26370 vs. ExPASy Swiss-Prot
Match: Q39108 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2)

HSP 1 Score: 402.1 bits (1032), Expect = 6.2e-111
Identity = 215/313 (68.69%), Postives = 247/313 (78.91%), Query Frame = 0


Query: 30  SSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMRYSVLAEGA 89
           S ++  S+ SS   S+ FDL+TYW  LI EINQKLDEA+P+++P  IYEAMRYSVLA+GA
Sbjct: 28  SPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGA 87

Query: 90  KRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 149
           KRAPPVMCVAACELFG DRLAAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTV
Sbjct: 88  KRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTV 147

Query: 150 YGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMAAGQFLDLE 209
           YG  MAILAGDALFPL FQHIVSHTP DLVP + +LR++ EIA+ VGS GMAAGQ++DLE
Sbjct: 148 YGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLE 207

Query: 210 GGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGRAVGVLYQVVDDIRKEQ 269
           GGP  + FVQEKKFG M +CSAVCGGLL GA + E+Q LRRYGRAVG+LYQVVDDI ++ 
Sbjct: 208 GGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITED- 267

Query: 270 AKKLDQTDESKKRKGKSYVGVYGIEKA-KEVAEELRTKAKKELEGFE-KY--GDRVMPLY 329
                        K KSY G  G EK   E+AEEL+ KAKKEL+ F+ KY  GD ++PLY
Sbjct: 268 -------------KKKSYDG--GAEKGMMEMAEELKEKAKKELQVFDNKYGGGDTLVPLY 324

Query: 330 SFVDYAADMSFSL 339
           +FVDYAA   F L
Sbjct: 328 TFVDYAAHRHFLL 324

[Close]

BLAST of Carg26370 vs. ExPASy Swiss-Prot
Match: Q43133 (Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba OX=3728 GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.5e-64
Identity = 145/330 (43.94%), Postives = 210/330 (63.64%), Query Frame = 0


Query: 22  RCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMR 81
           R  SSSSSSS  +    + ++ S  FD  +Y  +    +N+ LD AVP++ P +I+EAMR
Sbjct: 45  RTVSSSSSSSLITKEDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMR 104

Query: 82  YSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRR 141
           YS+LA G KR  PV+C+AACEL G +   A P  CA+EM+H  SLIHDDLPCMD+D  RR
Sbjct: 105 YSLLA-GGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRR 164

Query: 142 GQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMA 201
           G+P+NH VYG D+A+LAGDAL    F+H+ S T  ++ P +R++R V E+AKA+G+ G+ 
Sbjct: 165 GKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSP-ARVVRAVGELAKAIGTEGLV 224

Query: 202 AGQFLDL--EG------GPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGR 261
           AGQ +D+  EG      G   ++F+   K   + + SAV GG++ G  D E++RLR++ R
Sbjct: 225 AGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFAR 284

Query: 262 AVGVLYQVVDDIRKEQAKKLDQTDESK---KRKGK-------SYVGVYGIEKAKEVAEEL 321
            +G+L+QVVDDI       LD T  S+   K  GK       +Y  + G+EK++E AE+L
Sbjct: 285 CIGLLFQVVDDI-------LDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKL 344

Query: 322 RTKAKKELEGFEKYGDRVMPLYSFVDYAAD 334
            T+A+ +L GF+   D+V PL +  +Y A+
Sbjct: 345 NTEARDQLLGFD--SDKVAPLLALANYIAN 363

[Close]

BLAST of Carg26370 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 246.9 bits (629), Expect = 3.3e-64
Identity = 146/338 (43.20%), Postives = 210/338 (62.13%), Query Frame = 0


Query: 13  MNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLDEAVPIQY 72
           ++F +K ++  SSS  SSS  +      Q++   FD  +Y       +N+ LD AVP++ 
Sbjct: 40  ISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLRE 99

Query: 73  PDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLP 132
           P +I+EAMRYS+LA G KR  PV+C+AACEL G +   A P ACA+EM+H  SLIHDDLP
Sbjct: 100 PLKIHEAMRYSLLA-GGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLP 159

Query: 133 CMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIA 192
           CMD+D  RRG+P+NH V+G D+A+LAGDAL    F+H+ S T  D+V   R++R V E+A
Sbjct: 160 CMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELA 219

Query: 193 KAVGSRGMAAGQFLDL--EG------GPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHE 252
           KA+G+ G+ AGQ +D+  EG      G   +EF+   K   + + SAV G ++ G  D E
Sbjct: 220 KAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDE 279

Query: 253 VQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESK---KRKGK-------SYVGVYGIE 312
           ++RLR++ R +G+L+QVVDDI       LD T  SK   K  GK       +Y  + G+E
Sbjct: 280 IERLRKFARCIGLLFQVVDDI-------LDVTKSSKELGKTAGKDLIADKLTYPKIMGLE 339

Query: 313 KAKEVAEELRTKAKKELEGFEKYGDRVMPLYSFVDYAA 333
           K++E AE+L  +A+ +L GF+   D+V PL +  +Y A
Sbjct: 340 KSREFAEKLNREARDQLLGFD--SDKVAPLLALANYIA 367

[Close]

BLAST of Carg26370 vs. ExPASy Swiss-Prot
Match: Q9ZU77 (Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18620 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.3e-60
Identity = 129/304 (42.43%), Postives = 188/304 (61.84%), Query Frame = 0


Query: 47  FDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGV 106
           FD  +Y       +N+ LD AV ++ P +I+EA+RYS+LA G KR  PV+C+AACEL G 
Sbjct: 53  FDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARG-KRVRPVLCIAACELVGG 112

Query: 107 DRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLG 166
           +   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    
Sbjct: 113 EESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFA 172

Query: 167 FQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGP--------NSIEFV 226
           F+H+ + T    V  +R++R + E+AKA+GS+G+ AGQ +DL  G           +EF+
Sbjct: 173 FEHLATST---AVSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFI 232

Query: 227 QEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDE 286
              K   + + + V G ++ G  D EV++LRR+ R +G+L+QVVDDI       LD T  
Sbjct: 233 HVHKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDI-------LDVTKS 292

Query: 287 SK---KRKGK-------SYVGVYGIEKAKEVAEELRTKAKKELEGFEKYGDRVMPLYSFV 333
           S+   K  GK       +Y  + G+EK+K+ A++L + A ++L GF+    RV PL +  
Sbjct: 293 SEELGKTAGKDLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFD--SSRVKPLLALA 343

[Close]

BLAST of Carg26370 vs. ExPASy Swiss-Prot
Match: A0A0U3BRC5 (Geranylfarnesyl diphosphate synthase, chloroplastic OS=Leucosceptrum canum OX=694369 GN=GFDPS PE=1 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-59
Identity = 139/321 (43.30%), Postives = 204/321 (63.55%), Query Frame = 0


Query: 27  SSSSSSSSSSAVSSQAK----SIQFDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMRY 86
           S+S+ S S SA S QAK    + QFD K Y  + I  +NQ LD A+P++ P +I+EAMRY
Sbjct: 45  SNSTFSVSDSAHSHQAKPHVRNAQFDFKAYMLEKITAVNQALDAALPVREPVKIHEAMRY 104

Query: 87  SVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRG 146
           S+L  G KR  P++C+AAC L G D   A P+A ALEM+HA SL+HDDLPCMD+D  RRG
Sbjct: 105 SLLL-GGKRICPIVCLAACHLVGGDESTAMPSAAALEMIHAMSLMHDDLPCMDNDDLRRG 164

Query: 147 QPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMAA 206
           +PSNH V+G    +LAG AL    F+HI + T    V   ++LRV+ E+A+ +G+ G+  
Sbjct: 165 RPSNHVVFGEGATVLAGYALIARAFEHIATAT--QGVGPGKILRVIGELAQLIGAEGVVG 224

Query: 207 GQFLDL----EG----GPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGRA 266
           GQ +DL    EG    G   +E++   K     + SAV G +L GA + E++RLR+Y R+
Sbjct: 225 GQVVDLRCGGEGQMAIGLEQLEYIHLHKTAASVEASAVAGAVLGGASEEEIERLRKYSRS 284

Query: 267 VGVLYQVVDDIR--KEQAKKLDQTDESKKRKGK-SYVGVYGIEKAKEVAEELRTKAKKEL 326
            G+L+QVVDDI    + +++L +T       GK +Y  + G+EK++E+AE+L+ +A+++L
Sbjct: 285 AGLLFQVVDDILDVTKSSEELGKTAGKDLAAGKTTYPKLLGMEKSREMAEKLKREAQEQL 344

Query: 327 EGFEKYGDRVMPLYSFVDYAA 333
            GF+    +  PL + VD+ A
Sbjct: 345 LGFDPI--KAAPLIALVDFIA 360

[Close]

BLAST of Carg26370 vs. ExPASy TrEMBL
Match: A0A6J1EJ23 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111435051 PE=3 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 7.6e-181
Identity = 337/342 (98.54%), Postives = 337/342 (98.54%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASSLRMNFGTKASIRC   SSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRC---SSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 91

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAVPIQYPDQIYEAMRYSVLA GAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 92  NQKLDEAVPIQYPDQIYEAMRYSVLANGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 151

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 152 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 211

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA
Sbjct: 212 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 271

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA
Sbjct: 272 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 331

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAKKELEGFEKYGDRVMPLYSFVDYAAD SFSLESST
Sbjct: 332 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 370

[Close]

BLAST of Carg26370 vs. ExPASy TrEMBL
Match: A0A6J1JQ91 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486485 PE=3 SV=1)

HSP 1 Score: 636.0 bits (1639), Expect = 9.3e-179
Identity = 333/342 (97.37%), Postives = 333/342 (97.37%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASSLRMNFGTKASIRC      SSSSSSSAVSSQAKSI FDLKTYWKKLILEI
Sbjct: 32  MAFSIMAASSLRMNFGTKASIRC------SSSSSSSAVSSQAKSIHFDLKTYWKKLILEI 91

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 92  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 151

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 152 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 211

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA
Sbjct: 212 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 271

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYV VYGIEKAKEVA
Sbjct: 272 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVRVYGIEKAKEVA 331

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAKKELEGFEKYGDRVMPLYSFVDYAAD SFSLESST
Sbjct: 332 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADRSFSLESST 367

[Close]

BLAST of Carg26370 vs. ExPASy TrEMBL
Match: A0A5D3DIC5 (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004430 PE=3 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 7.7e-165
Identity = 303/342 (88.60%), Postives = 321/342 (93.86%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFS+MAASSL  +FG K  IRC       SSSSSSA+SSQ KS+ FDLKTYWK+LILEI
Sbjct: 1   MAFSLMAASSLSTSFGRKTPIRC-------SSSSSSALSSQTKSLHFDLKTYWKQLILEI 60

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAV IQYP+QIYEAMRYSVLA+GAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 61  NQKLDEAVLIQYPEQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VH ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 121 VHEASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIA+AVGSRGMAAGQFLDLEGGPNS+EFVQEKKFGEM+QCSAVCGGLLAGA
Sbjct: 181 ESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMAQCSAVCGGLLAGA 240

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHE+QRLRRYGRAVGVLYQVVDDI +EQ+KKL++T ESK+RKGKSYVGVYGIEKAKEVA
Sbjct: 241 EDHEIQRLRRYGRAVGVLYQVVDDILEEQSKKLNETTESKRRKGKSYVGVYGIEKAKEVA 300

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAK ELEGFEKYGDRVMPLYSFVDYAAD SFS E+S+
Sbjct: 301 EELRTKAKNELEGFEKYGDRVMPLYSFVDYAADRSFSFETSS 335

[Close]

BLAST of Carg26370 vs. ExPASy TrEMBL
Match: A0A1S3BJF3 (LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490255 PE=3 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 8.5e-164
Identity = 302/342 (88.30%), Postives = 320/342 (93.57%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFS+MAASSL  +FG K  IRC       SSSSSSA+SSQ KS+ FDLKTYWK+LILEI
Sbjct: 1   MAFSLMAASSLSTSFGRKTPIRC-------SSSSSSALSSQTKSLHFDLKTYWKQLILEI 60

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEAV IQYP+QIYEAMRYSVLA+GAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 61  NQKLDEAVLIQYPEQIYEAMRYSVLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VH ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP
Sbjct: 121 VHEASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIA+AVGSRGMAAGQFLDLEGGPNS+EFVQ KKFGEM+QCSAVCGGLLAGA
Sbjct: 181 ESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQXKKFGEMAQCSAVCGGLLAGA 240

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           ED E+QRLRRYGRAVGVLYQVVDDI +EQ+KKLD+T+ESK+RKGKSYVGVYGIEKAKEVA
Sbjct: 241 EDPEIQRLRRYGRAVGVLYQVVDDILEEQSKKLDETNESKRRKGKSYVGVYGIEKAKEVA 300

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELRTKAK ELEGFEKYGDRVMPLYSFVDYAAD SFS E+S+
Sbjct: 301 EELRTKAKNELEGFEKYGDRVMPLYSFVDYAADRSFSFETSS 335

[Close]

BLAST of Carg26370 vs. ExPASy TrEMBL
Match: A0A6J1C3B2 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111007977 PE=3 SV=1)

HSP 1 Score: 585.5 bits (1508), Expect = 1.4e-163
Identity = 300/342 (87.72%), Postives = 319/342 (93.27%), Query Frame = 0


Query: 1   MAFSIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEI 60
           MAFSIMAASS+R++FG  A IRC       SSSS SAV ++AKS+QFDLKTYWKKLI E 
Sbjct: 1   MAFSIMAASSIRVHFGRTAPIRC-------SSSSPSAVLTRAKSLQFDLKTYWKKLIFET 60

Query: 61  NQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120
           NQKLDEA+ +QYPD+IYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM
Sbjct: 61  NQKLDEAILVQYPDEIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEM 120

Query: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVP 180
           VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTP DLVP
Sbjct: 121 VHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPSDLVP 180

Query: 181 ESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGA 240
           ESRLLRVVAEIA+AVGSRGMAAGQFLDLEGGPNS+EFVQEKKFGEM QCSAVCGGLLAGA
Sbjct: 181 ESRLLRVVAEIARAVGSRGMAAGQFLDLEGGPNSVEFVQEKKFGEMGQCSAVCGGLLAGA 240

Query: 241 EDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGKSYVGVYGIEKAKEVA 300
           EDHEVQRLRRYGRAVGVLYQVVDDI +EQ K+LD TDES++RKGKSYVGVYGIEKAKEVA
Sbjct: 241 EDHEVQRLRRYGRAVGVLYQVVDDILEEQTKQLDATDESRRRKGKSYVGVYGIEKAKEVA 300

Query: 301 EELRTKAKKELEGFEKYGDRVMPLYSFVDYAADMSFSLESST 343
           EELR KAKKEL+GFEKYGDRV+PLYSFVDYAAD  FS+ESS+
Sbjct: 301 EELRNKAKKELDGFEKYGDRVVPLYSFVDYAADRGFSIESSS 335

[Close]

BLAST of Carg26370 vs. TAIR 10
Match: AT4G38460.1 (geranylgeranyl reductase )

HSP 1 Score: 402.1 bits (1032), Expect = 4.4e-112
Identity = 215/313 (68.69%), Postives = 247/313 (78.91%), Query Frame = 0


Query: 30  SSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMRYSVLAEGA 89
           S ++  S+ SS   S+ FDL+TYW  LI EINQKLDEA+P+++P  IYEAMRYSVLA+GA
Sbjct: 28  SPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQKLDEAIPVKHPAGIYEAMRYSVLAQGA 87

Query: 90  KRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTV 149
           KRAPPVMCVAACELFG DRLAAFPTACALEMVHAASLIHDDLPCMDDDP RRG+PSNHTV
Sbjct: 88  KRAPPVMCVAACELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPVRRGKPSNHTV 147

Query: 150 YGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMAAGQFLDLE 209
           YG  MAILAGDALFPL FQHIVSHTP DLVP + +LR++ EIA+ VGS GMAAGQ++DLE
Sbjct: 148 YGSGMAILAGDALFPLAFQHIVSHTPPDLVPRATILRLITEIARTVGSTGMAAGQYVDLE 207

Query: 210 GGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGRAVGVLYQVVDDIRKEQ 269
           GGP  + FVQEKKFG M +CSAVCGGLL GA + E+Q LRRYGRAVG+LYQVVDDI ++ 
Sbjct: 208 GGPFPLSFVQEKKFGAMGECSAVCGGLLGGATEDELQSLRRYGRAVGMLYQVVDDITED- 267

Query: 270 AKKLDQTDESKKRKGKSYVGVYGIEKA-KEVAEELRTKAKKELEGFE-KY--GDRVMPLY 329
                        K KSY G  G EK   E+AEEL+ KAKKEL+ F+ KY  GD ++PLY
Sbjct: 268 -------------KKKSYDG--GAEKGMMEMAEELKEKAKKELQVFDNKYGGGDTLVPLY 324

Query: 330 SFVDYAADMSFSL 339
           +FVDYAA   F L
Sbjct: 328 TFVDYAAHRHFLL 324

[Close]

BLAST of Carg26370 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 )

HSP 1 Score: 246.9 bits (629), Expect = 2.3e-65
Identity = 146/338 (43.20%), Postives = 210/338 (62.13%), Query Frame = 0


Query: 13  MNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLDEAVPIQY 72
           ++F +K ++  SSS  SSS  +      Q++   FD  +Y       +N+ LD AVP++ 
Sbjct: 40  ISFRSKRTVSSSSSIVSSSVVTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLRE 99

Query: 73  PDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLP 132
           P +I+EAMRYS+LA G KR  PV+C+AACEL G +   A P ACA+EM+H  SLIHDDLP
Sbjct: 100 PLKIHEAMRYSLLA-GGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLP 159

Query: 133 CMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIA 192
           CMD+D  RRG+P+NH V+G D+A+LAGDAL    F+H+ S T  D+V   R++R V E+A
Sbjct: 160 CMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELA 219

Query: 193 KAVGSRGMAAGQFLDL--EG------GPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHE 252
           KA+G+ G+ AGQ +D+  EG      G   +EF+   K   + + SAV G ++ G  D E
Sbjct: 220 KAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDE 279

Query: 253 VQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESK---KRKGK-------SYVGVYGIE 312
           ++RLR++ R +G+L+QVVDDI       LD T  SK   K  GK       +Y  + G+E
Sbjct: 280 IERLRKFARCIGLLFQVVDDI-------LDVTKSSKELGKTAGKDLIADKLTYPKIMGLE 339

Query: 313 KAKEVAEELRTKAKKELEGFEKYGDRVMPLYSFVDYAA 333
           K++E AE+L  +A+ +L GF+   D+V PL +  +Y A
Sbjct: 340 KSREFAEKLNREARDQLLGFD--SDKVAPLLALANYIA 367

[Close]

BLAST of Carg26370 vs. TAIR 10
Match: AT2G18620.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 235.0 bits (598), Expect = 9.2e-62
Identity = 129/304 (42.43%), Postives = 188/304 (61.84%), Query Frame = 0


Query: 47  FDLKTYWKKLILEINQKLDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGV 106
           FD  +Y       +N+ LD AV ++ P +I+EA+RYS+LA G KR  PV+C+AACEL G 
Sbjct: 53  FDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARG-KRVRPVLCIAACELVGG 112

Query: 107 DRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLG 166
           +   A P ACA+EM+H  SLIHDDLPCMD+D  RRG+P+NH V+G D+A+LAGDAL    
Sbjct: 113 EESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFA 172

Query: 167 FQHIVSHTPFDLVPESRLLRVVAEIAKAVGSRGMAAGQFLDLEGGP--------NSIEFV 226
           F+H+ + T    V  +R++R + E+AKA+GS+G+ AGQ +DL  G           +EF+
Sbjct: 173 FEHLATST---AVSPARVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFI 232

Query: 227 QEKKFGEMSQCSAVCGGLLAGAEDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDE 286
              K   + + + V G ++ G  D EV++LRR+ R +G+L+QVVDDI       LD T  
Sbjct: 233 HVHKTAVLLEAATVLGAIVGGGSDEEVEKLRRFARCIGLLFQVVDDI-------LDVTKS 292

Query: 287 SK---KRKGK-------SYVGVYGIEKAKEVAEELRTKAKKELEGFEKYGDRVMPLYSFV 333
           S+   K  GK       +Y  + G+EK+K+ A++L + A ++L GF+    RV PL +  
Sbjct: 293 SEELGKTAGKDLIADKLTYPKLMGLEKSKDFADKLLSDAHEQLHGFD--SSRVKPLLALA 343

[Close]

BLAST of Carg26370 vs. TAIR 10
Match: AT3G29430.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 228.4 bits (581), Expect = 8.6e-60
Identity = 135/327 (41.28%), Postives = 198/327 (60.55%), Query Frame = 0


Query: 17  TKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQKLDEAVPIQYPDQI 76
           T  S+ C+ SS           S+   S  FD K+Y  +    ++  L+ +VP+Q P  I
Sbjct: 32  TVLSLSCALSSQGGDMIPPEGKSNDRNS-AFDFKSYMIRKAESVSAALNVSVPLQEPLTI 91

Query: 77  YEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHAASLIHDDLPCMDD 136
            EA+RYS+LA G KR  P++C+AACEL G D   A   ACA+EM+H +SLIHDDLPCMDD
Sbjct: 92  QEAVRYSLLA-GGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDD 151

Query: 137 DPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIAKAVG 196
              RRG+P+NH  +G DMA+LAGDAL  L F+H ++     LV   R++R V E+AKA+G
Sbjct: 152 ADLRRGKPTNHKEFGEDMAVLAGDALLALAFEH-MTFVSNGLVAPERMIRAVMELAKAIG 211

Query: 197 SRGMAAGQFLDL--------EGGPNSIEFVQEKKFGEMSQCSAVCGGLLAGAEDHEVQRL 256
           ++G+ AGQ  DL        + G   +EF+   K   + + +AV G ++ G  + E+++L
Sbjct: 212 TKGLVAGQVTDLCSQGLNPDDVGLERLEFIHLHKTAALLEAAAVLGAIMGGGTEEEIEKL 271

Query: 257 RRYGRAVGVLYQVVDDIR--KEQAKKLDQTDESKKRKGK-SYVGVYGIEKAKEVAEELRT 316
           R+Y R +G+L+QVVDDI    E  K+L +T       GK +Y  + G+E+++EVAE+LR 
Sbjct: 272 RKYARCIGLLFQVVDDILDVTESTKELGKTAGKDVMAGKLTYPRLIGLERSREVAEKLRR 331

Query: 317 KAKKELEGFEKYGDRVMPLYSFVDYAA 333
           +A ++L GF+   D+  PL +   Y A
Sbjct: 332 EAAEQLLGFD--SDKAAPLVALASYIA 353

[Close]

BLAST of Carg26370 vs. TAIR 10
Match: AT3G32040.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 226.1 bits (575), Expect = 4.3e-59
Identity = 137/344 (39.83%), Postives = 207/344 (60.17%), Query Frame = 0


Query: 4   SIMAASSLRMNFGTKASIRCSSSSSSSSSSSSSAVSSQAKSIQFDLKTYWKKLILEINQK 63
           SI++ ++L+    T  S+ C+ +S            S  ++  FD K+Y  +    ++  
Sbjct: 23  SILSFNNLQKR--TVLSLSCALTSQGGKDMIPPKGKSNDRNFAFDFKSYMIRKAESVSMA 82

Query: 64  LDEAVPIQYPDQIYEAMRYSVLAEGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHA 123
           L+ +VP Q P  I EA+RYS+LA G KR  P++C+AACEL G D   A   ACA+EM+H 
Sbjct: 83  LNVSVPPQDPLAIQEAVRYSLLA-GGKRVRPLLCIAACELVGGDEATAMSAACAVEMIHT 142

Query: 124 ASLIHDDLPCMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESR 183
           +SLIHDDLPCMDD   RRG+P+NH V+G  MA+LAGDAL  L F+H+   +   + PE R
Sbjct: 143 SSLIHDDLPCMDDADLRRGKPTNHKVFGEHMAVLAGDALLALAFEHMTVVSSGLVAPE-R 202

Query: 184 LLRVVAEIAKAVGSRGMAAGQFLDL--------EGGPNSIEFVQEKKFGEMSQCSAVCGG 243
           ++R V E+AKA+G++G+ AGQ  DL        + G   +EF+   K   + + +AV G 
Sbjct: 203 MIRSVTELAKAIGTKGLVAGQVSDLCSQGLNPYDVGLERLEFIHLHKTAALLEAAAVLGA 262

Query: 244 LLAGAEDHEVQRLRRYGRAVGVLYQVVDDIRKEQAKKLDQTDESKKRKGK-------SYV 303
           ++ G  + E+Q+LR+YGR +G+L+QVVDDI        + T+E  K  GK       +Y 
Sbjct: 263 IIGGGTEEEIQKLRKYGRCIGLLFQVVDDI----IDVTESTEELGKTAGKDVMARKLTYP 322

Query: 304 GVYGIEKAKEVAEELRTKAKKELEGFEKYGDRVMPLYSFVDYAA 333
            + G+E+++EVAE+LR +A ++L GF+   ++V PL +   Y A
Sbjct: 323 RLIGLERSREVAEKLRREAAEQLLGFD--SNKVAPLVALASYIA 356

The following BLAST results are available for this feature:

BLAST of Carg26370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022744.1	4.0e-184	100.00	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
KAG6589028.1	1.9e-181	98.83	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_022928137.1	1.6e-180	98.54	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_023529740.1	7.8e-180	97.95	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_022989428.1	1.9e-178	97.37	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

BLAST of Carg26370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39108	6.2e-111	68.69	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
Q43133	2.5e-64	43.94	Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis al...	[more]
P34802	3.3e-64	43.20	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]
Q9ZU77	1.3e-60	42.43	Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana O...	[more]
A0A0U3BRC5	1.4e-59	43.30	Geranylfarnesyl diphosphate synthase, chloroplastic OS=Leucosceptrum canum OX=69...	[more]

BLAST of Carg26370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EJ23	7.6e-181	98.54	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
A0A6J1JQ91	9.3e-179	97.37	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
A0A5D3DIC5	7.7e-165	88.60	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit OS=Cucumis mel...	[more]
A0A1S3BJF3	8.5e-164	88.30	LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small s...	[more]
A0A6J1C3B2	1.4e-163	87.72	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

BLAST of Carg26370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38460.1	4.4e-112	68.69	geranylgeranyl reductase	[more]
AT4G36810.1	2.3e-65	43.20	geranylgeranyl pyrophosphate synthase 1	[more]
AT2G18620.1	9.2e-62	42.43	Terpenoid synthases superfamily protein	[more]
AT3G29430.1	8.6e-60	41.28	Terpenoid synthases superfamily protein	[more]
AT3G32040.1	4.3e-59	39.83	Terpenoid synthases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 293..313
None	No IPR available	SFLD	SFLDS00005	Isoprenoid_Synthase_Type_I	coord: 77..319 e-value: 5.101E-43 score: 142.2
None	No IPR available	PANTHER	PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	coord: 17..337
None	No IPR available	PANTHER	PTHR43281:SF5	HETERODIMERIC GERANYLGERANYL PYROPHOSPHATE SYNTHASE SMALL SUBUNIT, CHLOROPLASTIC	coord: 17..337
IPR000092	Polyprenyl synthetase	PFAM	PF00348	polyprenyl_synt	coord: 75..266 e-value: 1.0E-31 score: 110.0
IPR000092	Polyprenyl synthetase	CDD	cd00685	Trans_IPPS_HT	coord: 73..314 e-value: 6.79964E-60 score: 191.225
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 46..342 e-value: 7.1E-83 score: 280.2
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 50..315
IPR033749	Polyprenyl synthetase, conserved site	PROSITE	PS00723	POLYPRENYL_SYNTHASE_1	coord: 126..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26370-RA	Carg26370-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
molecular_function	GO:0004659	prenyltransferase activity