Carg26367 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26367
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	signal recognition particle 43 kDa protein, chloroplastic-like
Location	Carg_Chr11: 11397919 .. 11398950 (+)
RNA-Seq Expression	Carg26367
Synteny	Carg26367

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCGTCTTCGTCAACCAGTCACTCTCCCGCCTCAAACTTCCCCCTAAACCCCCTCTCCCTAAACTCCCTCTCCCTAAACTCCCCTCTCCAATTCTCCATCTCCATCTCCGCCGCACCTTCAAATCTTTCACCGCCTACGCTGTCAACGAGCCCCTCACTCAACAAACCCAGCAACCAGATAACTTCCCGGAAGACGACGAATCCTACGGCGAGGTCGACGGAATCATCGGCAGCCGCGCCCTGGCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGACGGGCATTCTCCGTCGTGGGTCCCTTCCGATTTCATTGCTAAAGACGTCGTCGCTGAGTACGAAACCCCCTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCCCTCAAGTCACTTATCGACGCCGCTGACAGCCGCGATTTCAACGCTGTGGACGAAGACGGCAGAACCGCACTCCTCTTCGTCGCTGGACTCGGGTCGGAGCCTTGCATTAGAATTTTAGCTGAGGCCGGCGCGGATCTCGACCACCGCGACAAGAGCGGCGGGTTCACTGCTCTGCATATGGCCGCCGGCTACGTAAAACCCGGCACGGTGGAGCTATTACTGGAATTGGGAGCAGATCCGGAGGTGCAAGACGACAAGGGTCGGACGCCATTAGTCCTGGCAAGGGAGATTGTGAAAGCGACGCCGAGGGTTCAATTTGCAAGGAGGTTGGGGCTGGAGAGAGTGATCGGAGCGCTGGAGAGAGTGGTTTTCGAGTTCGCGGAGGTGGAGGAGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGACGGAGAAGATAATGAATGGGTGAAAGCGGCGCTGATTGCGGAGGATTTGGTGGCGGATTTCGAAGCCGGATTGGAATACGCGGTGGCGGAAGCGGTGGTCGGAAAGAGAGTTGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGATGCCACGTGGGAGCCTGAGGGTTAA

mRNA sequence

ATGGACGCCGTCTTCGTCAACCAGTCACTCTCCCGCCTCAAACTTCCCCCTAAACCCCCTCTCCCTAAACTCCCTCTCCCTAAACTCCCCTCTCCAATTCTCCATCTCCATCTCCGCCGCACCTTCAAATCTTTCACCGCCTACGCTGTCAACGAGCCCCTCACTCAACAAACCCAGCAACCAGATAACTTCCCGGAAGACGACGAATCCTACGGCGAGGTCGACGGAATCATCGGCAGCCGCGCCCTGGCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGACGGGCATTCTCCGTCGTGGGTCCCTTCCGATTTCATTGCTAAAGACGTCGTCGCTGAGTACGAAACCCCCTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCCCTCAAGTCACTTATCGACGCCGCTGACAGCCGCGATTTCAACGCTGTGGACGAAGACGGCAGAACCGCACTCCTCTTCGTCGCTGGACTCGGGTCGGAGCCTTGCATTAGAATTTTAGCTGAGGCCGGCGCGGATCTCGACCACCGCGACAAGAGCGGCGGGTTCACTGCTCTGCATATGGCCGCCGGCTACGTAAAACCCGGCACGGTGGAGCTATTACTGGAATTGGGAGCAGATCCGGAGGTGCAAGACGACAAGGGTCGGACGCCATTAGTCCTGGCAAGGGAGATTGTGAAAGCGACGCCGAGGGTTCAATTTGCAAGGAGGTTGGGGCTGGAGAGAGTGATCGGAGCGCTGGAGAGAGTGGTTTTCGAGTTCGCGGAGGTGGAGGAGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGACGGAGAAGATAATGAATGGGTGAAAGCGGCGCTGATTGCGGAGGATTTGGTGGCGGATTTCGAAGCCGGATTGGAATACGCGGTGGCGGAAGCGGTGGTCGGAAAGAGAGTTGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGATGCCACGTGGGAGCCTGAGGGTTAA

Coding sequence (CDS)

ATGGACGCCGTCTTCGTCAACCAGTCACTCTCCCGCCTCAAACTTCCCCCTAAACCCCCTCTCCCTAAACTCCCTCTCCCTAAACTCCCCTCTCCAATTCTCCATCTCCATCTCCGCCGCACCTTCAAATCTTTCACCGCCTACGCTGTCAACGAGCCCCTCACTCAACAAACCCAGCAACCAGATAACTTCCCGGAAGACGACGAATCCTACGGCGAGGTCGACGGAATCATCGGCAGCCGCGCCCTGGCCGACGCTACCGGAATGGAGTATCTAATTAAATGGAAAGACGGGCATTCTCCGTCGTGGGTCCCTTCCGATTTCATTGCTAAAGACGTCGTCGCTGAGTACGAAACCCCCTGGTGGACCGCCGCCAAGAAAGCCGATGAATCCGCCCTCAAGTCACTTATCGACGCCGCTGACAGCCGCGATTTCAACGCTGTGGACGAAGACGGCAGAACCGCACTCCTCTTCGTCGCTGGACTCGGGTCGGAGCCTTGCATTAGAATTTTAGCTGAGGCCGGCGCGGATCTCGACCACCGCGACAAGAGCGGCGGGTTCACTGCTCTGCATATGGCCGCCGGCTACGTAAAACCCGGCACGGTGGAGCTATTACTGGAATTGGGAGCAGATCCGGAGGTGCAAGACGACAAGGGTCGGACGCCATTAGTCCTGGCAAGGGAGATTGTGAAAGCGACGCCGAGGGTTCAATTTGCAAGGAGGTTGGGGCTGGAGAGAGTGATCGGAGCGCTGGAGAGAGTGGTTTTCGAGTTCGCGGAGGTGGAGGAGCTGCTGGAGAAGAGGGGGAAGGGGGAGAATTTGGAGTATCTGGTGAAGTGGAAGGACGGAGAAGATAATGAATGGGTGAAAGCGGCGCTGATTGCGGAGGATTTGGTGGCGGATTTCGAAGCCGGATTGGAATACGCGGTGGCGGAAGCGGTGGTCGGAAAGAGAGTTGGGGACGACGGGAAGATGGAGTATCTTGTGAAATGGACGGATATTGAGGATGCCACGTGGGAGCCTGAGGGTTAA

Protein sequence

MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG

Homology

[Close]

BLAST of Carg26367 vs. NCBI nr
Match: KAG7022747.1 (Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 686.0 bits (1769), Expect = 1.6e-193
Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH
Sbjct: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180

Query: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240
           RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR
Sbjct: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 343

[Close]

BLAST of Carg26367 vs. NCBI nr
Match: KAG6589032.1 (Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 670.6 bits (1729), Expect = 7.1e-189
Identity = 338/343 (98.54%), Postives = 338/343 (98.54%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLSRLKLPPKP     PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 1   MDAVFVNQSLSRLKLPPKP-----PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH
Sbjct: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180

Query: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240
           RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR
Sbjct: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 338

[Close]

BLAST of Carg26367 vs. NCBI nr
Match: XP_022928488.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 670.6 bits (1729), Expect = 7.1e-189
Identity = 338/343 (98.54%), Postives = 338/343 (98.54%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLSRLKLPPKP     PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 57  MDAVFVNQSLSRLKLPPKP-----PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 116

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 117 PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 176

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH
Sbjct: 177 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 236

Query: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240
           RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR
Sbjct: 237 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 296

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 297 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 356

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 357 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 394

[Close]

BLAST of Carg26367 vs. NCBI nr
Match: XP_022989400.1 (signal recognition particle 43 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 665.6 bits (1716), Expect = 2.3e-187
Identity = 334/343 (97.38%), Postives = 337/343 (98.25%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLS LKLPPKP     PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 50  MDAVFVNQSLSSLKLPPKP-----PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 109

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSR+LADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 110 PDNFPEDDESYGEVDGIIGSRSLADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 169

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPC+RILAEAGADLDH
Sbjct: 170 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCVRILAEAGADLDH 229

Query: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240
           RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR
Sbjct: 230 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 289

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 290 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 349

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKR+GDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 350 DFEAGLEYAVAEAVVGKRLGDDGKMEYLVKWTDIEDATWEPEG 387

[Close]

BLAST of Carg26367 vs. NCBI nr
Match: XP_023529738.1 (signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 659.8 bits (1701), Expect = 1.3e-185
Identity = 333/343 (97.08%), Postives = 336/343 (97.96%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLSRLKLPPKPPLPKLP P L    LHLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 1   MDAVFVNQSLSRLKLPPKPPLPKLPSPILH---LHLHLRRTFKSFTAYAVNEPLTQQTQQ 60

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PD+FPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 61  PDDFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDED RTALLFVAGLGSEPC+RILAEAGA+LDH
Sbjct: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDSRTALLFVAGLGSEPCVRILAEAGANLDH 180

Query: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240
           RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR
Sbjct: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 340

[Close]

BLAST of Carg26367 vs. ExPASy Swiss-Prot
Match: O22265 (Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CAO PE=1 SV=2)

HSP 1 Score: 401.0 bits (1029), Expect = 1.4e-110
Identity = 209/347 (60.23%), Postives = 257/347 (74.06%), Query Frame = 0


Query: 3   AVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQPD 62
           A+ ++QSLSR+KL P            P  +    +   F+     AV     + T   +
Sbjct: 12  ALVIHQSLSRIKLSPPKSSSSSSSAFSPESLPIRRIELCFRGAICAAVQRNYEETTSSVE 71

Query: 63  NFPEDDE---SYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 122
              EDDE   SYGEV+ IIGSR   +   MEYLI+WKDGHSPSWVPS +IA DVV+EYET
Sbjct: 72  EAEEDDESSSSYGEVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLD 182
           PWWTAA+KADE AL  L+   + RD +AVDE+GRTALLFVAGLGS+ C+R+LAEAGADLD
Sbjct: 132 PWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPR---V 242
           HRD  GG TALHMAAGYV+P  VE L+ELGAD EV+D++G T L LAREI+K TP+   +
Sbjct: 192 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 251

Query: 243 QFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAE 302
           QF RR+GLE+VI  LE  VFE+AEV+E++EKRGKG+++EYLV+WKDG D EWVK   +AE
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVVGKRVGDDGK-MEYLVKWTDIEDATWEPE 343
           D+  D+E GLEYAVAE+V+GKRVGDDGK +EYLVKWTD+ DATWEP+
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQ 354

[Close]

BLAST of Carg26367 vs. ExPASy Swiss-Prot
Match: Q8LSQ2 (Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0131900 PE=2 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 9.3e-91
Identity = 184/359 (51.25%), Postives = 236/359 (65.74%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           M+AV  + SLSRLK PP P   + P   +  P     LR   +  TA AV +  T     
Sbjct: 1   MEAVLRHPSLSRLK-PPNPNAQRTPALSITVP---FRLRLPNRRLTAAAVFQDQTNPRNP 60

Query: 61  PDNFPEDDESYGEVDGIIGSRALAD-----------ATGMEYLIKWKDGHSPSWVPSDFI 120
                +DDE+YGEVD I+ SR + +            T  EYL++WKDGH PSW+P++ I
Sbjct: 61  ASKGGDDDEAYGEVDRIVSSRTIKNPVFAEDGSATTVTATEYLVEWKDGHEPSWIPAEAI 120

Query: 121 AKDVVAEYETPWWTAAKKADESALKSLI-DAADSRDFNAVDEDGRTALLFVAGLGSEPCI 180
           A DVVAEYETPWWTAAKKAD + + +L+ D    RD +A D  GRTA+ F AGLGSE C+
Sbjct: 121 AADVVAEYETPWWTAAKKADAAEITALLADETLRRDPDAEDAQGRTAMHFAAGLGSEECV 180

Query: 181 RILAEAGADLDHRDKS-GGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAR 240
           R LAEAGAD+   +++ GG T LH+A GY +P  V  LLELGA+PE  D +GRTPL L +
Sbjct: 181 RALAEAGADVGRPERAGGGLTPLHIAVGYGRPAAVRALLELGAEPEAPDGQGRTPLELVQ 240

Query: 241 EIVKATPR---VQFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGE 300
           +++  TP+     F RRL LE     LE+ V+E+ EVE++++ RG+G+  EYLV+W+DG 
Sbjct: 241 DVLAKTPKGNPATFERRLALEAAAKELEKAVYEWGEVEKVVDGRGEGKWREYLVEWRDGG 300

Query: 301 DNEWVKAALIAEDLVADFEAGLEYAVAEAVVGKR--VGDDGKMEYLVKWTDIEDATWEP 342
           D EWV+AA +AEDLV DF+AGLEYAVAEAVV KR     +GK EYLVKW DIE+ATWEP
Sbjct: 301 DREWVRAAWVAEDLVKDFDAGLEYAVAEAVVNKREAAEGEGKWEYLVKWVDIEEATWEP 355

[Close]

BLAST of Carg26367 vs. ExPASy Swiss-Prot
Match: Q69ZR2 (E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 6.1e-10
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 126 KKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKSG 185
           +  D  AL   ID   + + N +D+ G+T L + +  G++  +  L E GAD++   +S 
Sbjct: 371 RSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNRGQRS- 430

Query: 186 GFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLARE 229
             ++LH AA + +P   + LL  GA+P+++D+ G+TPL  ARE
Sbjct: 431 --SSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARE 470

[Close]

BLAST of Carg26367 vs. ExPASy Swiss-Prot
Match: Q9ULT8 (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=3)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-09
Identity = 36/96 (37.50%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 135 SLIDAADSRDF--NAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKSGGFTALHM 194
           +LIDA D+  F  N +D+ G+T L + +  G++  +  L E GAD++   +S   ++LH 
Sbjct: 377 ALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNRGQRS---SSLHY 436

Query: 195 AAGYVKPGTVELLLELGADPEVQDDKGRTPLVLARE 229
           AA + +P   + LL  GA+P+++D+ G+TPL  ARE
Sbjct: 437 AACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARE 469

[Close]

BLAST of Carg26367 vs. ExPASy Swiss-Prot
Match: Q06527 (Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) OX=572477 GN=Alvin_1094 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-09
Identity = 46/111 (41.44%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 116 EYETPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAG 175
           E  T    AA K +   L  LI+     D  A D+ G TALL  A  G    +  LA  G
Sbjct: 163 EGRTALMQAASKGETGVLPLLIEG--GADLEARDKQGATALLIAADQGQAGAVETLAGLG 222

Query: 176 ADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLA 227
           A LD  D  G  TAL +A G+     VE LL +GADP  QD KG T L+ A
Sbjct: 223 AQLDAVDALGS-TALILAVGHGHVAMVERLLAMGADPNRQDRKGTTALMEA 270

[Close]

BLAST of Carg26367 vs. ExPASy TrEMBL
Match: A0A6J1EP65 (signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435281 PE=4 SV=1)

HSP 1 Score: 670.6 bits (1729), Expect = 3.4e-189
Identity = 338/343 (98.54%), Postives = 338/343 (98.54%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLSRLKLPPKP     PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 57  MDAVFVNQSLSRLKLPPKP-----PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 116

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 117 PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 176

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH
Sbjct: 177 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 236

Query: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240
           RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR
Sbjct: 237 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 296

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 297 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 356

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 357 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 394

[Close]

BLAST of Carg26367 vs. ExPASy TrEMBL
Match: A0A6J1JM92 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486468 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.1e-187
Identity = 334/343 (97.38%), Postives = 337/343 (98.25%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 60
           MDAVFVNQSLS LKLPPKP     PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ
Sbjct: 50  MDAVFVNQSLSSLKLPPKP-----PLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQ 109

Query: 61  PDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 120
           PDNFPEDDESYGEVDGIIGSR+LADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP
Sbjct: 110 PDNFPEDDESYGEVDGIIGSRSLADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYETP 169

Query: 121 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDH 180
           WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPC+RILAEAGADLDH
Sbjct: 170 WWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCVRILAEAGADLDH 229

Query: 181 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 240
           RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR
Sbjct: 230 RDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQFAR 289

Query: 241 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 300
           RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA
Sbjct: 290 RLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDLVA 349

Query: 301 DFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEPEG 344
           DFEAGLEYAVAEAVVGKR+GDDGKMEYLVKWTDIEDATWEPEG
Sbjct: 350 DFEAGLEYAVAEAVVGKRLGDDGKMEYLVKWTDIEDATWEPEG 387

[Close]

BLAST of Carg26367 vs. ExPASy TrEMBL
Match: A0A1S3BHX6 (signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490246 PE=4 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 1.2e-157
Identity = 285/343 (83.09%), Postives = 315/343 (91.84%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAV--NEPLTQQT 60
           M+AVF+NQSLSRLKLPPKPPLP LP+P  PS I HL+LRR F  FTAYAV  ++P+TQQT
Sbjct: 1   MEAVFLNQSLSRLKLPPKPPLP-LPIP-FPSTIPHLNLRRNFTHFTAYAVQSDQPITQQT 60

Query: 61  QQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
            +    PEDDESYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE
Sbjct: 61  YK----PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADL 180
           TPWWTAAKKAD+SAL+SLID+ D RDF+AVDEDGRTALLFV+GLGS  C+RILAEAG +L
Sbjct: 121 TPWWTAAKKADKSALESLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILAEAGVNL 180

Query: 181 DHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQF 240
           +HRD SGGFTALHMAAGYVKP TVELL+ELGADPE++D+KGRT L LA+EI+KATPRVQF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIEDEKGRTALELAKEILKATPRVQF 240

Query: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300
            RRLGLE+VIGA+E+VV+E+AEVEELLEKRGKGENLEYLVKWKDGEDNEWVK  LIAEDL
Sbjct: 241 MRRLGLEKVIGAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEP 342
           VAD+EAGLEYAVAEAVVGKRVGD+GKMEYLVKWTDI+DATWEP
Sbjct: 301 VADYEAGLEYAVAEAVVGKRVGDEGKMEYLVKWTDIQDATWEP 337

[Close]

BLAST of Carg26367 vs. ExPASy TrEMBL
Match: A0A0A0K634 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1)

HSP 1 Score: 562.4 bits (1448), Expect = 1.3e-156
Identity = 283/343 (82.51%), Postives = 309/343 (90.09%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAV--NEPLTQQT 60
           M+AVF+NQSLSRLKLPPK PLP       PSPI HL+LRR F  FTAYAV  ++P+TQQT
Sbjct: 1   MEAVFLNQSLSRLKLPPKTPLP------FPSPIPHLNLRRNFTHFTAYAVQSDQPITQQT 60

Query: 61  QQPDNFPEDDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120
           Q+    PEDDESYGEVDGIIGSRAL DATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE
Sbjct: 61  QK----PEDDESYGEVDGIIGSRALPDATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYE 120

Query: 121 TPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADL 180
           TPWWTAAKKADESALKSLID+ D RDF+AVDEDGRTALLFV+GLGS  C+RILA+AG +L
Sbjct: 121 TPWWTAAKKADESALKSLIDSGDERDFDAVDEDGRTALLFVSGLGSVECVRILADAGVNL 180

Query: 181 DHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPRVQF 240
           +HRD SGGFTALHMAAGYVKP TVELL+ELGADPE+ D+KGRT L LA+EI+KATPRVQF
Sbjct: 181 NHRDNSGGFTALHMAAGYVKPETVELLVELGADPEIDDEKGRTALELAKEILKATPRVQF 240

Query: 241 ARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAEDL 300
            RRLGLE+VI A+E+VV+E+AEVEELLEKRGKGENLEYLVKWKDGEDNEWVK  LIAEDL
Sbjct: 241 MRRLGLEKVIRAVEKVVYEYAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKVGLIAEDL 300

Query: 301 VADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEP 342
           V D+EAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDI+DATWEP
Sbjct: 301 VGDYEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIQDATWEP 333

[Close]

BLAST of Carg26367 vs. ExPASy TrEMBL
Match: A0A6J1C248 (signal recognition particle 43 kDa protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007575 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 7.8e-141
Identity = 264/346 (76.30%), Postives = 297/346 (85.84%), Query Frame = 0


Query: 1   MDAVFVNQSLSRLKLPPK-PPLPKLPLPKLPSPILHLHLRRTFKSFTAYAV--NEPLTQQ 60
           MDA+F+NQS+SRLK+ PK  PLP    P  PS I + +L+     F+A AV  ++ L QQ
Sbjct: 1   MDALFLNQSISRLKISPKSSPLP----PLYPSRIPNRNLK-----FSACAVQNDQRLAQQ 60

Query: 61  TQQPDNFPE--DDESYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVA 120
           +    +  +  +DE+YGEVDGIIGSRAL D +GMEYLI WKDGH+PSWVPSDFIA+DVVA
Sbjct: 61  SNAAISAGKFNEDETYGEVDGIIGSRALQDGSGMEYLIAWKDGHAPSWVPSDFIARDVVA 120

Query: 121 EYETPWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAG 180
           EYETPWWTAAKKADESALKSLIDAAD RD +AVDEDGRTALLFVAGLGSE C+R+LAE G
Sbjct: 121 EYETPWWTAAKKADESALKSLIDAADGRDLDAVDEDGRTALLFVAGLGSEACVRMLAEGG 180

Query: 181 ADLDHRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPR 240
           A++DHRD SGGFTALHMAAGYVKPG VE LL+LGA PEV+D+KGRT L LAREI+KATPR
Sbjct: 181 ANVDHRDNSGGFTALHMAAGYVKPGAVEQLLDLGAYPEVEDEKGRTALELAREILKATPR 240

Query: 241 VQFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIA 300
           +QF RR+GLERV+GALE+ VFE+AEVE LLEKRGKGENLEYLVKWKDGEDNEWVKA LIA
Sbjct: 241 IQFGRRMGLERVVGALEKAVFEYAEVEALLEKRGKGENLEYLVKWKDGEDNEWVKAGLIA 300

Query: 301 EDLVADFEAGLEYAVAEAVVGKRVGDDGKMEYLVKWTDIEDATWEP 342
            DLVADFEAGLEYAVAEAV GKR+GDDGKMEYLVKWTDIEDATWEP
Sbjct: 301 ADLVADFEAGLEYAVAEAVAGKRMGDDGKMEYLVKWTDIEDATWEP 337

[Close]

BLAST of Carg26367 vs. TAIR 10
Match: AT2G47450.1 (chloroplast signal recognition particle component (CAO) )

HSP 1 Score: 401.0 bits (1029), Expect = 9.8e-112
Identity = 209/347 (60.23%), Postives = 257/347 (74.06%), Query Frame = 0


Query: 3   AVFVNQSLSRLKLPPKPPLPKLPLPKLPSPILHLHLRRTFKSFTAYAVNEPLTQQTQQPD 62
           A+ ++QSLSR+KL P            P  +    +   F+     AV     + T   +
Sbjct: 12  ALVIHQSLSRIKLSPPKSSSSSSSAFSPESLPIRRIELCFRGAICAAVQRNYEETTSSVE 71

Query: 63  NFPEDDE---SYGEVDGIIGSRALADATGMEYLIKWKDGHSPSWVPSDFIAKDVVAEYET 122
              EDDE   SYGEV+ IIGSR   +   MEYLI+WKDGHSPSWVPS +IA DVV+EYET
Sbjct: 72  EAEEDDESSSSYGEVNKIIGSRTAGEG-AMEYLIEWKDGHSPSWVPSSYIAADVVSEYET 131

Query: 123 PWWTAAKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLD 182
           PWWTAA+KADE AL  L+   + RD +AVDE+GRTALLFVAGLGS+ C+R+LAEAGADLD
Sbjct: 132 PWWTAARKADEQALSQLL---EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 191

Query: 183 HRDKSGGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAREIVKATPR---V 242
           HRD  GG TALHMAAGYV+P  VE L+ELGAD EV+D++G T L LAREI+K TP+   +
Sbjct: 192 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 251

Query: 243 QFARRLGLERVIGALERVVFEFAEVEELLEKRGKGENLEYLVKWKDGEDNEWVKAALIAE 302
           QF RR+GLE+VI  LE  VFE+AEV+E++EKRGKG+++EYLV+WKDG D EWVK   +AE
Sbjct: 252 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 311

Query: 303 DLVADFEAGLEYAVAEAVVGKRVGDDGK-MEYLVKWTDIEDATWEPE 343
           D+  D+E GLEYAVAE+V+GKRVGDDGK +EYLVKWTD+ DATWEP+
Sbjct: 312 DVAKDYEDGLEYAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQ 354

[Close]

BLAST of Carg26367 vs. TAIR 10
Match: AT4G35450.3 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-10
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 125 AKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKS 184
           A   D   LK+ + +  ++D    D +GRTAL F  G G   C ++L +AGA ++  DK+
Sbjct: 226 ASLGDVEGLKAALASGGNKD--EEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKN 285

Query: 185 GGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAR-----EIVKATPRVQF 239
              T LH AAGY +   V LLLE GA   +Q+   +TP+ +A+     E+VK   +  F
Sbjct: 286 KN-TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLEKDAF 341

[Close]

BLAST of Carg26367 vs. TAIR 10
Match: AT4G35450.4 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-10
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 125 AKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKS 184
           A   D   LK+ + +  ++D    D +GRTAL F  G G   C ++L +AGA ++  DK+
Sbjct: 188 ASLGDVEGLKAALASGGNKD--EEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKN 247

Query: 185 GGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAR-----EIVKATPRVQF 239
              T LH AAGY +   V LLLE GA   +Q+   +TP+ +A+     E+VK   +  F
Sbjct: 248 KN-TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLEKDAF 303

[Close]

BLAST of Carg26367 vs. TAIR 10
Match: AT4G35450.2 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-10
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 125 AKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKS 184
           A   D   LK+ + +  ++D    D +GRTAL F  G G   C ++L +AGA ++  DK+
Sbjct: 226 ASLGDVEGLKAALASGGNKD--EEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKN 285

Query: 185 GGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAR-----EIVKATPRVQF 239
              T LH AAGY +   V LLLE GA   +Q+   +TP+ +A+     E+VK   +  F
Sbjct: 286 KN-TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLEKDAF 341

[Close]

BLAST of Carg26367 vs. TAIR 10
Match: AT4G35450.1 (ankyrin repeat-containing protein 2 )

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-10
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 125 AKKADESALKSLIDAADSRDFNAVDEDGRTALLFVAGLGSEPCIRILAEAGADLDHRDKS 184
           A   D   LK+ + +  ++D    D +GRTAL F  G G   C ++L +AGA ++  DK+
Sbjct: 226 ASLGDVEGLKAALASGGNKD--EEDSEGRTALHFACGYGELKCAQVLIDAGASVNAVDKN 285

Query: 185 GGFTALHMAAGYVKPGTVELLLELGADPEVQDDKGRTPLVLAR-----EIVKATPRVQF 239
              T LH AAGY +   V LLLE GA   +Q+   +TP+ +A+     E+VK   +  F
Sbjct: 286 KN-TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLEKDAF 341

The following BLAST results are available for this feature:

BLAST of Carg26367 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022747.1	1.6e-193	100.00	Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita ar...	[more]
KAG6589032.1	7.1e-189	98.54	Signal recognition particle 43 kDa protein, chloroplastic, partial [Cucurbita ar...	[more]
XP_022928488.1	7.1e-189	98.54	signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita moscha...	[more]
XP_022989400.1	2.3e-187	97.38	signal recognition particle 43 kDa protein, chloroplastic [Cucurbita maxima]	[more]
XP_023529738.1	1.3e-185	97.08	signal recognition particle 43 kDa protein, chloroplastic-like [Cucurbita pepo s...	[more]

BLAST of Carg26367 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22265	1.4e-110	60.23	Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thalian...	[more]
Q8LSQ2	9.3e-91	51.25	Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sati...	[more]
Q69ZR2	6.1e-10	33.98	E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus OX=10090 GN=Hectd1 PE=1 SV=2	[more]
Q9ULT8	1.0e-09	37.50	E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens OX=9606 GN=HECTD1 PE=1 SV=3	[more]
Q06527	2.3e-09	41.44	Ankyrin homolog OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 10...	[more]

BLAST of Carg26367 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EP65	3.4e-189	98.54	signal recognition particle 43 kDa protein, chloroplastic-like OS=Cucurbita mosc...	[more]
A0A6J1JM92	1.1e-187	97.38	signal recognition particle 43 kDa protein, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A1S3BHX6	1.2e-157	83.09	signal recognition particle 43 kDa protein, chloroplastic OS=Cucumis melo OX=365...	[more]
A0A0A0K634	1.3e-156	82.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018780 PE=4 SV=1	[more]
A0A6J1C248	7.8e-141	76.30	signal recognition particle 43 kDa protein, chloroplastic OS=Momordica charantia...	[more]

BLAST of Carg26367 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47450.1	9.8e-112	60.23	chloroplast signal recognition particle component (CAO)	[more]
AT4G35450.3	3.7e-10	36.13	ankyrin repeat-containing protein 2	[more]
AT4G35450.4	3.7e-10	36.13	ankyrin repeat-containing protein 2	[more]
AT4G35450.2	3.7e-10	36.13	ankyrin repeat-containing protein 2	[more]
AT4G35450.1	3.7e-10	36.13	ankyrin repeat-containing protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 185..214 e-value: 0.0025 score: 27.1 coord: 116..147 e-value: 340.0 score: 8.4 coord: 151..180 e-value: 8.0 score: 15.4
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 151..183 score: 10.60604
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 185..217 score: 11.727859
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 308..343 e-value: 20.0 score: 3.6 coord: 257..307 e-value: 1.3E-8 score: 44.6 coord: 70..122 e-value: 2.0E-4 score: 30.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 259..288 score: 8.865101
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 309..343 score: 11.525801
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 116..254 e-value: 4.5E-36 score: 125.4
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 117..228
None	No IPR available	GENE3D	2.40.50.40		coord: 255..304 e-value: 1.0E-18 score: 68.5 coord: 69..115 e-value: 1.3E-15 score: 58.6
None	No IPR available	GENE3D	2.40.50.40		coord: 305..343 e-value: 7.4E-20 score: 72.3
None	No IPR available	PANTHER	PTHR24128	HOMEOBOX PROTEIN WARIAI	coord: 1..342
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 185..217 score: 10.365044
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 151..183 score: 9.250726
IPR020683	Ankyrin repeat-containing domain	PFAM	PF12796	Ank_2	coord: 124..216 e-value: 4.8E-10 score: 39.9
IPR030300	Signal recognition particle 43kDa protein	PANTHER	PTHR24128:SF43	SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC	coord: 1..342
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 257..304
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 67..121
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 311..342

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26367-RA	Carg26367-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070208	protein heterotrimerization
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0080085	signal recognition particle, chloroplast targeting
molecular_function	GO:0097718	disordered domain specific binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0030674	protein-macromolecule adaptor activity
molecular_function	GO:0005515	protein binding