Carg26364 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26364
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	expansin-like A2
Location	Carg_Chr11: 11408765 .. 11411063 (+)
RNA-Seq Expression	Carg26364
Synteny	Carg26364

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATCATCCACGAAGCTCATAGAGTCGGTGGGAACAAACTCCCATCTCTCCACGTGAAACACATTACCTTAAAATCATAAACAAACCTCATTGGGAACACATTATCCAATGGCTCTTCTTCTATAACAATCCATTAGCTTCTCCTCTTAAGACTTCATCCAAAAATGGGCTTATTCCTTTGCCTTCTCTTGTTCTTCCTCGCCTCATCAGCTTCTGCCTGTGATCGCTGTCTCCACCACTCCAAGACTGCCTATATCTCAAATGATTCAACACTTTCATGTACAATTCTTCTTAAAACCTTAGATTTTCTCTTCTTTTAGTACTTTTATTCAATAATTTGCTATCATTTGCAGCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCAACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGCGCATGCTATCAGGTAAAATGCAGCTTCGAACTATTCTATCTTTTAAAGGGTTTCGTATTGTCGGGTTGAGTAATCAACTTATTTGAGTTGGGTTGAGTTTAAACAACGTTAAATAGGTTGAATTAGTTTATAGGTTATTTGAAACTATATTAAAAGAACTCGTGTGATCATGTCATAGGAGATAGGAATTTTAAACCCTAGTTTGACTCGTGGACATAAAACATTACAAAAATCACTCTCACACACGGTAACAGCCCAAACCTACTATTAGCAGATATTGCCCTCTTTAGGGTTTTTTCTCAAGGTTTTTAAAACGCGTATGCTAGGGAGAAGTTTCCACACCCTTATAAAGAATGCTTTGTTCTTCTCCCCAACTGATGTGGGATCTCACAACTCATCCCTCTTCGGGCCCAACGTCATTGTTGGCACTCATTCCCTTCTCTAATCGATGTGAGACCCCCAATCCACCCCCTTTGAGGCCCAGCATCCTTGCTAGCACACCGCCGCATGTCCAACTCCTTCGCCTTCGGGGTTCAGCCTCTTGGCTGGCACATCGCCACCTAGTGTCTGGCTCTGATACCCTTTATAACATCCCAAACCCACTGTTAATAGATATTGTCCTCTTTGAGCTTTCTCTTCCAGTATTCTTCTCAAAGTTTTTAAAACGCTAGTCTATTACGAAGAGGTTTCTACACTCTTATAAAAAAAAAAAATTCTCTCTCCCAATTGACGTGGGATCTACACGGCTACAGATGAGGTGCAAAGACAAGAAACTTTGCAGCACAGCTGGGACCAAACTCATTTTGACTGATCTGAATCTACACACCAATAGAACTGATCTTGTTTTGAGTAAGAAAGCTTTTTCTTGGCTCAAAAGGGCCAACATTACAATATCTTCAAGCGCACAACTCTCGATATTGAATACAAGAGGTTAGATTTTTAATATAAGTCTACTGCTAACAGATATTATCTTATTTGGACTTTCTCTTTCGAGCTTCCCTCGAAGATTTCCACACCTTTATAAAAAATGTTTCGTTCTCCTCTTCAACCAATGTGGGATCTCATTCCCTTCTCCAGTCGATGCGGGACCCTCCAATCCACCTCCCTTTAGGACCCAACATCCTTACTGACACACTGCCTCGTGTCCATCCCTTTGGCACTTAGCCTCCTCACTGGCACATCGTCCGGTGTCTGGCTCTGATACCATTTGTGAGATCCCATGAGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCGCTCCCTAGCAGGCGTTTTTAAAACTTCGAGGAAAACTTGAAAACGTAATTTTAAAATAAGATGCACTTTTCAAAGGGTTTATATTTATGGGCTGTGCATGGTTTTGCAGGATACCATGTGAATACAAAAAACAAAATCTGTCAGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGACTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTAGTTCACCTTCGTCCGGTAAGTTCGGGATTCAAATTTCTGATCTTTTGATAAAAAAGTAAGAACAAAAATAAACTAAGTTGACGAATATTATTGGCATAAAAGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCAGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGGTGA

mRNA sequence

ATGAGAATCATCCACGAAGCTCATAGAGTCGCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCAACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGCGCATGCTATCAGGTAAAATGCAGCTTCGAACTATTCTATCTTTTAAAGGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGACTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTAGTTCACCTTCGTCCGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCAGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGGTGA

Coding sequence (CDS)

ATGAGAATCATCCACGAAGCTCATAGAGTCGCTGGGGCTTGTGGCTATGGCTCCTTAGCCCTTGGCTTCCTCAACGGACACCTCGCTGCTGGCGTGCCGTCCCTTTACAAGGAGGGCGTTCGTTGTGGCGCATGCTATCAGGTAAAATGCAGCTTCGAACTATTCTATCTTTTAAAGGTAAGAATTGAAGAGTCAAGCCAAAAGCCCCATCACATGACTGTTAAGTTCCTATATCAAGGTGGGCAGACTGATATTCTACTAGTTCACCTTCGTCCGGTGGATTCGGGAAGTACGTTCTTCATGAGCAGAAGGCATGGGACGGCGGTGTGGGAAATAGACACGGCACCAGAGGCGGCGGTGGTGTTTCAACTAAGAGTGATTTCAGGGTTCGACGGGATGTGGGTGACGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATGGATGCCATTGCCAAAGGACAAGAGAGCTGTAGAAAATGTGATGAAGGGCATTGGTGA

Protein sequence

MRIIHEAHRVAGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCSFELFYLLKVRIEESSQKPHHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERAVPADWKPGMIYDLGVQMDAIAKGQESCRKCDEGHW

Homology

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BLAST of Carg26364 vs. NCBI nr
Match: KAG7022750.1 (Expansin-like A3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373.2 bits (957), Expect = 1.2e-99
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MRIIHEAHRVAGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCSFELFYLLKV 60
           MRIIHEAHRVAGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCSFELFYLLKV
Sbjct: 1   MRIIHEAHRVAGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCSFELFYLLKV 60

Query: 61  RIEESSQKPHHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAV 120
           RIEESSQKPHHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAV
Sbjct: 61  RIEESSQKPHHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAV 120

Query: 121 VFQLRVISGFDGMWVTAERAVPADWKPGMIYDLGVQMDAIAKGQESCRKCDEGHW 176
           VFQLRVISGFDGMWVTAERAVPADWKPGMIYDLGVQMDAIAKGQESCRKCDEGHW
Sbjct: 121 VFQLRVISGFDGMWVTAERAVPADWKPGMIYDLGVQMDAIAKGQESCRKCDEGHW 175

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BLAST of Carg26364 vs. NCBI nr
Match: XP_023529769.1 (expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 9.8e-78
Identity = 153/225 (68.00%), Postives = 159/225 (70.67%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALGFL+GHLAAGVPSLYKEGVRCGACYQ++C                    
Sbjct: 40  SGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQMRCKDKKLCSTAGTKLILTDLNL 99

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         S E+ Y           L VRIEESSQKPH
Sbjct: 100 HTNRTDLVLSKKAFSALAQKGQHYNIFKRTSLEVEYKRIPCEYKKQNLSVRIEESSQKPH 159

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF
Sbjct: 160 HMAIKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 219

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BLAST of Carg26364 vs. NCBI nr
Match: XP_022928449.1 (expansin-like A2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 296.2 bits (757), Expect = 1.9e-76
Identity = 151/225 (67.11%), Postives = 157/225 (69.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GACGYGSLALGFL+GHLAAGVPSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQMRCKDKKLCSTSGTKLILTDLNL 98

Query: 71  -----------------------FELF------------------YLLKVRIEESSQKPH 130
                                  + +F                    L VRIEESSQKPH
Sbjct: 99  HTNRTDLVLSKKAFSALAQKGQHYNIFKRTTLDVEYKRIPCEYKKQNLSVRIEESSQKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM VKFLYQGGQTDILLVHLRPVD GSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF
Sbjct: 159 HMAVKFLYQGGQTDILLVHLRPVDWGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 218

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BLAST of Carg26364 vs. NCBI nr
Match: XP_038888869.1 (expansin-like A3 [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68
Identity = 131/225 (58.22%), Postives = 151/225 (67.11%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYG LALGF++GHLAAG+PSLYKEGV CGACYQ++C                    
Sbjct: 39  SGACGYGPLALGFVDGHLAAGIPSLYKEGVHCGACYQIRCKDKKICSKTGTKVILIDQNV 98

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         + ++ Y           L VRIEESSQKPH
Sbjct: 99  QSNRTDFILSKKAFSAMAQKGHQKNILRRGTLDIEYKRMPCEYKKQNLSVRIEESSQKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFL+QGGQTDI+LVHL PV++G T FM+RRHGTAVWEIDT PEAAV+FQ+RVISGF
Sbjct: 159 HMALKFLFQGGQTDIVLVHLHPVNTGRTAFMTRRHGTAVWEIDTVPEAAVMFQIRVISGF 218

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BLAST of Carg26364 vs. NCBI nr
Match: XP_011658619.1 (expansin-like A3 [Cucumis sativus] >KGN43330.2 hypothetical protein Csa_020273 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 132/225 (58.67%), Postives = 148/225 (65.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALG  NGHLAAGVPSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALGLFNGHLAAGVPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNV 98

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         + ++ Y           L VRIEESS+KPH
Sbjct: 99  QTNRTDFVLSKKAFSAMAQKGHDKTILRHGTLDIEYKRMPCEYKKQNLSVRIEESSKKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFL+QGGQTDI+LVHL PV+ G T FMSRRHGTAVWEID  PE AV+FQ+RVISGF
Sbjct: 159 HMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTAVWEIDMMPEKAVMFQIRVISGF 218

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BLAST of Carg26364 vs. ExPASy Swiss-Prot
Match: Q9LZT5 (Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.1e-34
Identity = 83/225 (36.89%), Postives = 112/225 (49.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GAC YG +A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNT 100

Query: 71  --------SFELF------------YLLK---------------------VRIEESSQKP 130
                   S   F            YLLK                     VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 175
           +++ +K LYQGGQT+++ + + PV S    +MSR HG AVW  D  P  A+ F+  V  G
Sbjct: 161 NYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG-AVWATDKVPTGALQFKFTVTGG 220

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BLAST of Carg26364 vs. ExPASy Swiss-Prot
Match: Q9SVE5 (Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-33
Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A GF  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 42  SGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNK 101

Query: 71  --------------------------------FELFY----------LLKVRIEESSQKP 130
                                            ++ Y           + VR+EESS+ P
Sbjct: 102 TNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNP 161

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 176
           +++ +K LYQGGQT+++ +++  V S    +M+R HG AVW  D  P  A+ F+  V +G
Sbjct: 162 NYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG-AVWVTDKVPNGALQFRFVVTAG 221

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BLAST of Carg26364 vs. ExPASy Swiss-Prot
Match: Q9LZT4 (Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.9e-31
Identity = 74/227 (32.60%), Postives = 111/227 (48.90%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNK 100

Query: 71  --------------------------------FELFYL----------LKVRIEESSQKP 130
                                            ++ Y           + VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTF-FMSRRHGTAVWEIDTAPEAAVVFQLRVIS 176
           +++ +K LYQGGQT+++ + +  V S   + +M+R HG AVW  D  P  A+ F+  V  
Sbjct: 161 NYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHG-AVWVTDKVPTGAIQFRFVVTG 220

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BLAST of Carg26364 vs. ExPASy Swiss-Prot
Match: Q7XCL0 (Expansin-like A2 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.1e-30
Identity = 77/227 (33.92%), Postives = 107/227 (47.14%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           AG+CGYGSLA  F  GHLAA  P+L++ GV CGAC+QV+C                    
Sbjct: 51  AGSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEAR 110

Query: 71  ------------------------------SFELFYL-----------LKVRIEESSQKP 130
                                         + ++ Y            L +R+EE S+ P
Sbjct: 111 STNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPP 170

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 176
             ++++FLYQGGQTDI+ V +  V S +  FM+R +G A W    AP   + F++ V  G
Sbjct: 171 RELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYGPA-WSTAQAPAGPLQFRVVVTGG 230

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BLAST of Carg26364 vs. ExPASy Swiss-Prot
Match: Q10S70 (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.3e-29
Identity = 81/226 (35.84%), Postives = 107/226 (47.35%), Query Frame = 0


Query: 11  AGACGYGSLALGFL-NGHLAAGVPSLYKEGVRCGACYQVKC------------------- 70
           AG+CGYG+ A  F   G LAA  P+LY+ GV CGACYQV+C                   
Sbjct: 56  AGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRA 115

Query: 71  ------------------------------SFELFY----------LLKVRIEESSQKPH 130
                                         + ++ Y           L VR++E S+ P+
Sbjct: 116 RTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPN 175

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
            +T+ FLYQGGQTDI+ V +  V S S  FM+R HG + W +  AP   +  +L V  G+
Sbjct: 176 ELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPS-WSMANAPPGPLQMRLVVTGGY 235

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BLAST of Carg26364 vs. ExPASy TrEMBL
Match: A0A6J1EKV9 (expansin-like A2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435259 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.0e-77
Identity = 151/225 (67.11%), Postives = 157/225 (69.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GACGYGSLALGFL+GHLAAGVPSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQMRCKDKKLCSTSGTKLILTDLNL 98

Query: 71  -----------------------FELF------------------YLLKVRIEESSQKPH 130
                                  + +F                    L VRIEESSQKPH
Sbjct: 99  HTNRTDLVLSKKAFSALAQKGQHYNIFKRTTLDVEYKRIPCEYKKQNLSVRIEESSQKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM VKFLYQGGQTDILLVHLRPVD GSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF
Sbjct: 159 HMAVKFLYQGGQTDILLVHLRPVDWGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 218

[Close]

BLAST of Carg26364 vs. ExPASy TrEMBL
Match: A0A515EIV5 (Expansin A10-like protein OS=Cucumis melo OX=3656 GN=EXPLA10 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.2e-66
Identity = 129/225 (57.33%), Postives = 147/225 (65.33%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLAL   NGHLA+G+PSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALPLFNGHLASGIPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNV 98

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         +  + Y           L VRIEE S+KPH
Sbjct: 99  QSNRTDFILSKKAFSAMAQKGHAKTILRHETLNIEYKRMPCEYKKQNLSVRIEEWSKKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFL+QGGQTDI+LVHL PV+ G T FMSRRHGT VWEIDT PE AV+FQ+RVISGF
Sbjct: 159 HMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTGVWEIDTMPEEAVMFQMRVISGF 218

[Close]

BLAST of Carg26364 vs. ExPASy TrEMBL
Match: A0A6J1C3F9 (expansin-like A2 OS=Momordica charantia OX=3673 GN=LOC111007589 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.5e-65
Identity = 131/225 (58.22%), Postives = 146/225 (64.89%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALGFL+GHLAAGVPSLYKEGVRCGACYQV+C                    
Sbjct: 39  SGACGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQVRCKDKKVCSRGGTKVILTDLNL 98

Query: 71  ------------SFELFYL----------------------------LKVRIEESSQKPH 130
                       +F    L                            + VR EESSQKPH
Sbjct: 99  HSNTTDFVLSKKAFSAMALKPRDKNILKTGTVDVEYKRIPCEYKKQNVSVRXEESSQKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           H+ VKFL+QGGQTDI+LVHL PV+SG T FM+RRHGTAVWE D A E AVVFQLRVISGF
Sbjct: 159 HLAVKFLFQGGQTDIVLVHLHPVNSGRTRFMNRRHGTAVWETDAAVEGAVVFQLRVISGF 218

[Close]

BLAST of Carg26364 vs. ExPASy TrEMBL
Match: A0A1S3BIH4 (expansin-like A3 OS=Cucumis melo OX=3656 GN=LOC103490243 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.5e-65
Identity = 127/225 (56.44%), Postives = 145/225 (64.44%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLAL   NGHLA+G+PSLYKEGVRCGACYQ++C                    
Sbjct: 39  SGACGYGSLALPLFNGHLASGIPSLYKEGVRCGACYQIRCKDKKVCSRRGTKVILTDQNV 98

Query: 71  ------------------------------SFELFYL----------LKVRIEESSQKPH 130
                                         +  + Y           L VRIEE S+KPH
Sbjct: 99  QSNRTDFILSKKAFSAMAQKGHAKTILRHETLNIEYKRMPCEYKKQNLSVRIEEWSKKPH 158

Query: 131 HMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGF 176
           HM +KFL+QGGQTDI+LVHL PV+ G T FMSRRHGT VWEIDT PE AV+FQ+RVISGF
Sbjct: 159 HMALKFLFQGGQTDIVLVHLHPVNGGRTAFMSRRHGTGVWEIDTMPEEAVMFQMRVISGF 218

[Close]

BLAST of Carg26364 vs. ExPASy TrEMBL
Match: A0A7J6EIT0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_007156 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 93/206 (45.15%), Postives = 120/206 (58.25%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GACGYGSLALGF NG++AA VPS+YK+G  CGAC+Q++C                    
Sbjct: 39  SGACGYGSLALGFSNGNVAAAVPSIYKDGAGCGACFQMRCKNPALCTKEGTIVTVTDLNP 98

Query: 71  --------SFELFYL-------------LKVRIEESSQKPHHMTVKFLYQGGQTDILLVH 130
                   S   F               L VR+EESSQKPH++ +KFLYQGGQT+I+ V 
Sbjct: 99  NNRTDFVVSSRAFSAMARKVPCVYKNKNLAVRVEESSQKPHYLAIKFLYQGGQTEIVGVD 158

Query: 131 LRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERAVPADWKPGM 176
           +  V S +  FMSR HG AVW+    P  A+  +L V SG+DG WV A+  +P+DWK G 
Sbjct: 159 IAQVGSANWGFMSRNHG-AVWDTSKVPAGAIQLRLVVTSGYDGRWVWAKSVLPSDWKTGG 218

[Close]

BLAST of Carg26364 vs. TAIR 10
Match: AT3G45960.2 (expansin-like A3 )

HSP 1 Score: 144.8 bits (364), Expect = 6.4e-35
Identity = 83/225 (36.89%), Postives = 112/225 (49.78%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKC-------------------- 70
           +GAC YG +A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNT 100

Query: 71  --------SFELF------------YLLK---------------------VRIEESSQKP 130
                   S   F            YLLK                     VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 175
           +++ +K LYQGGQT+++ + + PV S    +MSR HG AVW  D  P  A+ F+  V  G
Sbjct: 161 NYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG-AVWATDKVPTGALQFKFTVTGG 220

[Close]

BLAST of Carg26364 vs. TAIR 10
Match: AT4G38400.1 (expansin-like A2 )

HSP 1 Score: 144.4 bits (363), Expect = 8.4e-35
Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A GF  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 42  SGACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNK 101

Query: 71  --------------------------------FELFY----------LLKVRIEESSQKP 130
                                            ++ Y           + VR+EESS+ P
Sbjct: 102 TNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNP 161

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISG 176
           +++ +K LYQGGQT+++ +++  V S    +M+R HG AVW  D  P  A+ F+  V +G
Sbjct: 162 NYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG-AVWVTDKVPNGALQFRFVVTAG 221

[Close]

BLAST of Carg26364 vs. TAIR 10
Match: AT3G45970.1 (expansin-like A1 )

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-32
Identity = 74/227 (32.60%), Postives = 111/227 (48.90%), Query Frame = 0


Query: 11  AGACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCS------------------- 70
           +GAC YGS+A  F  GH+AA +PS+YK+G  CGAC+QV+C                    
Sbjct: 41  SGACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNK 100

Query: 71  --------------------------------FELFYL----------LKVRIEESSQKP 130
                                            ++ Y           + VR+EE+S+KP
Sbjct: 101 SNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKP 160

Query: 131 HHMTVKFLYQGGQTDILLVHLRPVDSGSTF-FMSRRHGTAVWEIDTAPEAAVVFQLRVIS 176
           +++ +K LYQGGQT+++ + +  V S   + +M+R HG AVW  D  P  A+ F+  V  
Sbjct: 161 NYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHG-AVWVTDKVPTGAIQFRFVVTG 220

[Close]

BLAST of Carg26364 vs. TAIR 10
Match: AT3G45960.1 (expansin-like A3 )

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 78/217 (35.94%), Postives = 106/217 (48.85%), Query Frame = 0


Query: 19  LALGFLNGHLAAGVPSLYKEGVRCGACYQVKC---------------------------- 78
           +A  F  GH+AA +PS+YK+G  CGAC+QV+C                            
Sbjct: 1   MATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVL 60

Query: 79  SFELF------------YLLK---------------------VRIEESSQKPHHMTVKFL 138
           S   F            YLLK                     VR+EE+S+KP+++ +K L
Sbjct: 61  SSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLL 120

Query: 139 YQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTA 175
           YQGGQT+++ + + PV S    +MSR HG AVW  D  P  A+ F+  V  G+DG  V +
Sbjct: 121 YQGGQTEVVGIDIAPVGSSQWSYMSRSHG-AVWATDKVPTGALQFKFTVTGGYDGKTVWS 180

[Close]

BLAST of Carg26364 vs. TAIR 10
Match: AT4G17030.1 (expansin-like B1 )

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-12
Identity = 50/203 (24.63%), Postives = 69/203 (33.99%), Query Frame = 0


Query: 12  GACGYGSLALGFLNGHLAAGVPSLYKEGVRCGACYQVKCSF------------------- 71
           G CGYG       NG ++     L+  G  CGACYQV+C                     
Sbjct: 46  GHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEG 105

Query: 72  ----------------------ELF------------------YLLKVRIEESSQKPHHM 131
                                 +L+                  Y L  +I E S  PH++
Sbjct: 106 DGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYL 165

Query: 132 TVKFLYQGGQTDILLVHLRPVDSGSTFFMSRRHGTAVWEIDTAPEAAVVFQLRVISGFDG 156
            +  LY GG  DIL V +   D      M R  G AV ++   P   +  +  V      
Sbjct: 166 AILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFG-AVHDLQNPPRGTLTLRFLVYGSAGI 225

The following BLAST results are available for this feature:

BLAST of Carg26364 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022750.1	1.2e-99	100.00	Expansin-like A3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023529769.1	9.8e-78	68.00	expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022928449.1	1.9e-76	67.11	expansin-like A2 isoform X1 [Cucurbita moschata]	[more]
XP_038888869.1	4.1e-68	58.22	expansin-like A3 [Benincasa hispida]	[more]
XP_011658619.1	2.1e-67	58.67	expansin-like A3 [Cucumis sativus] >KGN43330.2 hypothetical protein Csa_020273 [...	[more]

BLAST of Carg26364 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZT5	9.1e-34	36.89	Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1	[more]
Q9SVE5	1.2e-33	34.07	Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1	[more]
Q9LZT4	1.9e-31	32.60	Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1	[more]
Q7XCL0	6.1e-30	33.92	Expansin-like A2 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA2 PE=2 SV=1	[more]
Q10S70	2.3e-29	35.84	Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1	[more]

BLAST of Carg26364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKV9	9.0e-77	67.11	expansin-like A2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435259 PE=3 S...	[more]
A0A515EIV5	3.2e-66	57.33	Expansin A10-like protein OS=Cucumis melo OX=3656 GN=EXPLA10 PE=2 SV=1	[more]
A0A6J1C3F9	3.5e-65	58.22	expansin-like A2 OS=Momordica charantia OX=3673 GN=LOC111007589 PE=3 SV=1	[more]
A0A1S3BIH4	3.5e-65	56.44	expansin-like A3 OS=Cucumis melo OX=3656 GN=LOC103490243 PE=3 SV=1	[more]
A0A7J6EIT0	1.2e-41	45.15	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_007156 PE=3 SV=1	[more]

BLAST of Carg26364 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45960.2	6.4e-35	36.89	expansin-like A3	[more]
AT4G38400.1	8.4e-35	34.07	expansin-like A2	[more]
AT3G45970.1	1.3e-32	32.60	expansin-like A1	[more]
AT3G45960.1	1.9e-31	35.94	expansin-like A3	[more]
AT4G17030.1	2.0e-12	24.63	expansin-like B1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007118	Expansin/Lol pI	PRINTS	PR01225	EXPANSNFAMLY	coord: 32..50 score: 39.34 coord: 10..28 score: 35.39
IPR036749	Expansin, cellulose-binding-like domain superfamily	GENE3D	2.60.40.760		coord: 56..157 e-value: 3.2E-25 score: 89.9
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	49590	PHL pollen allergen	coord: 59..152
IPR007117	Expansin, cellulose-binding-like domain	PFAM	PF01357	Expansin_C	coord: 59..142 e-value: 2.0E-10 score: 40.5
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 70..153 score: 14.719673
None	No IPR available	PANTHER	PTHR31692:SF4	EXPANSIN-LIKE A1-RELATED	coord: 58..172 coord: 8..51
None	No IPR available	PANTHER	PTHR31692	EXPANSIN-B3	coord: 58..172 coord: 8..51
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 11..53 score: 13.903736
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 11..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26364-RA	Carg26364-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region