Carg26308 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26308
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 1047010 .. 1048626 (+)
RNA-Seq ExpressionCarg26308
SyntenyCarg26308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTGAAGTCAGAGTTATATGATCTCTGCATTTTCTTCAATGGAAAACCATTTTGGTAGATTTGTGATTTTGGATTCTTTTTCGTTGTGGTTCACATTTGAAGCATCTTGTAAAGCTTGTGTGGATGCTACAAAATGGGTCACCCGACTAGCTAAGAAGGCCGCAAGTGCGGGAACGAGGCGAGCATAGATACAACGGATAGATAACTCGCTGAAGATAGTTTTCTAATGTTCTTTTCCACCCTCCTTTGTATATCTTGTCAATAGCAAGAAAAGGAATGCAGGAATACGCGTATGGAAGGTTTTTTAGTCATTTGGTTTTTCTTTGTTTTGGGGACATTATTGATTTGTTGAAAGGAACTATTAGGTTGGAGGAGAGAGAGAGAAAAAAAAAAAACAGAATTCTTTTCTAATATGTTGACTTTCTTGTGTGACACTAATCTTATTACTTGATATGACTGAATCTTTGTAAATGTATTTGTATTGAAGCAAAAGAAGCATCTTTGAATCAAAAACTTTTAAGGTCTACACAAGTCTTGAATCTGTTCCCCGTTCTTCTAGATGAATAGGAGACTGATATAACTGATCCCTGTTCTTTCAGATGAATAGGAGATTGATATGACTGAAACCTAGCCATTAGTGAATAGAGTCCATTTAAAGAGAGAAGGTAAAATTTCACATCAGTTGAAGAGTGAAATGAAAAATTTCTTATAAGAGTGAAAATTTCTCTCTTTATAAGAGTGAAAATTTCTCTCGAATTTTAAAACGGTGAGCCGAATATTTGCATCCCTCTATCAGATCTCTAATACAGTCAACAGATCACGAAATACACTGACTCTGCTGTGTAGCAATATTGAATATAAACACATAATATTTATGTTAAAACACGATTTGAAAGGGAACAAGGGAGTTATGAGCGTGGACGTTGCCCCTTCCAAAATGAAAACTTATGAATCCAAATGATCTTTGCAAATCATATTGATCATGTTTATACTTTTCTTCTCACTTGTACGGAGGAAGATGTTGAAAGCTACTCAAGGGAGAACCCACTTACAACAAACGGCTACATCGTTTAAAACCTTAGCTTGACTAGCATTGACAACAACTAGGGGCGTGCCAACATAAAAGCAGCTGCGCCATGTACAAATCAAAAGACACAAATACAAGTTTTGGAGGATTCTTTTTCGCCAGGTAAGACAAGAATGAAGATTGGTTCCCGAATACAAGTTAGATCCGGGCACACCAATATGCATAATGCTCATCTTTGCGATGGTTACTAACAAGACCCCCACATTGCAAACAAATAAAACTGCTCCCGTCTGAGAATGCATCCATAACAATTTGCATCCTACCAGTTTCTGCCAGAATAGAATTACCGTGAGCATCCACAACCAAAGAGCCAGATATGTCATTGTTACTATCTGTAGGTTCAGGGTTCAGAGGCTGGGCTTCAGCTATGGCACACTCTGCAAATAAAGAAGCTAGTTGATCAACATCAGCAGTCTCCTGAAATCGGGTTCTGTACAGCTCACGGGCACGGTGCAAGGATTGAAAGACTGCTGCGTCCCCACCTTGGGTTCTCATTGCCATTACAACCTGTTCAAACATGA

mRNA sequence

ATGGCAGCAGCTGAAGTCAGAGTTCAGGGTTCAGAGGCTGGGCTTCAGCTATGGCACACTCTGCAAATAAAGAAGCTAGTTGATCAACATCAGCAGTCTCCTGAAATCGGGTTCTGTACAGCTCACGGGCACGGTGCAAGGATTGAAAGACTGCTGCGTCCCCACCTTGGGTTCTCATTGCCATTACAACCTGTTCAAACATGA

Coding sequence (CDS)

ATGGCAGCAGCTGAAGTCAGAGTTCAGGGTTCAGAGGCTGGGCTTCAGCTATGGCACACTCTGCAAATAAAGAAGCTAGTTGATCAACATCAGCAGTCTCCTGAAATCGGGTTCTGTACAGCTCACGGGCACGGTGCAAGGATTGAAAGACTGCTGCGTCCCCACCTTGGGTTCTCATTGCCATTACAACCTGTTCAAACATGA

Protein sequence

MAAAEVRVQGSEAGLQLWHTLQIKKLVDQHQQSPEIGFCTAHGHGARIERLLRPHLGFSLPLQPVQT
Homology
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BLAST of Carg26308 vs. NCBI nr
Match: KAG7024269.1 (hypothetical protein SDJN02_13083, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 2.2e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MAAAEVRVQGSEAGLQLWHTLQIKKLVDQHQQSPEIGFCTAHGHGARIERLLRPHLGFSL 60
          MAAAEVRVQGSEAGLQLWHTLQIKKLVDQHQQSPEIGFCTAHGHGARIERLLRPHLGFSL
Sbjct: 1  MAAAEVRVQGSEAGLQLWHTLQIKKLVDQHQQSPEIGFCTAHGHGARIERLLRPHLGFSL 60

Query: 61 PLQPVQT 68
          PLQPVQT
Sbjct: 61 PLQPVQT 67

The following BLAST results are available for this feature:
BLAST of Carg26308 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024269.12.2e-30100.00hypothetical protein SDJN02_13083, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26308 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26308 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26308 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26308-RACarg26308-RAmRNA