Carg26302 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26302
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr09: 1068370 .. 1069268 (-)
RNA-Seq ExpressionCarg26302
SyntenyCarg26302
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGTAGCGCAGTTCTTCTCAAATTTAATCATAAATCTGCAACTCCTGAAAGTTTGATCCGCCATATGAGGTAGTTTGAATAATTTGATTGCCAATCTATTTTCAAAAGTGATTGCTAAAGTTGTTATTTGTTAGTTTAAATAAGGTTGCAGTCTATGTTATTATAGTTATGAAAAGAACTCCCTGTTGTGATTGAGAGATTACTACATTTACATATCGGATTGGGCCACGTTTCTAGGTGAAAGATGTGATAAAGGGCATTGGAGTTGTCATTTGTGGCTGGGCTTGAGCAACATGCACGGAAGGTGTTTGTTATAATGCCAAATCCAAAGAGGTGGAGAATGGTGGTAGAGGGCCAAGCCACGGGTCTAGATTATTATCATTGGAGAAGTACACACTAAGGTCTATCCCCCTAATTTCTGTAGCTGTCGACGTATATTTAGCTGCTTCAGTAATGGGGGCATCTTCCCAACATTGTGTTTCTTTCGCCAGAACCAGTTGCCCCATCTAATGTCCTATTATCCACGCTTTGAAAGTGATAAAGGTGCAATAAGACATTATCCTTTATTATATAGGGTACTGTTAGCTTGGCATTTATGTGGCTGCTTTCAGGTTCAAAGATTGCAAATGCGATACATCTCAAGGATGCCAATAGAATTGATTGCAGCTCTCCGTATTGCGTGGGTGTGGTTGTCTTTGGTCACTCGTAGTGAATGGACAAAAGATATTTTTTTTCACCTCCCACTTAGCTGGTTCGTGTTCTTTACACTGTTGTAGCATCTTTGAAACGCATTAGATTGAGATTTGTTATATATTAGTACTTTTTACAGCTATCTTCCTTTCTACAGTGCAGGATAGGGTGTCTGCAAATGGGTGGAGGGGACACACTTTGAAG

mRNA sequence

ATGAAACGTAGCGCAGTTCTTCTCAAATTTAATCATAAATCTGCAACTCCTGAAAGTTTGATCCGCCATATGAGGGCATTGGAGTTGTCATTTGTGGCTGGGCTTGAGCAACATGCACGGAAGGGTACTGTTAGCTTGGCATTTATGTGGCTGCTTTCAGGTTCAAAGATTGCAAATGCGATACATCTCAAGGATGCCAATAGAATTGATTGCAGCTCTCCGTATTGCGTGGTGCAGGATAGGGTGTCTGCAAATGGGTGGAGGGGACACACTTTGAAG

Coding sequence (CDS)

ATGAAACGTAGCGCAGTTCTTCTCAAATTTAATCATAAATCTGCAACTCCTGAAAGTTTGATCCGCCATATGAGGGCATTGGAGTTGTCATTTGTGGCTGGGCTTGAGCAACATGCACGGAAGGGTACTGTTAGCTTGGCATTTATGTGGCTGCTTTCAGGTTCAAAGATTGCAAATGCGATACATCTCAAGGATGCCAATAGAATTGATTGCAGCTCTCCGTATTGCGTGGTGCAGGATAGGGTGTCTGCAAATGGGTGGAGGGGACACACTTTGAAG

Protein sequence

MKRSAVLLKFNHKSATPESLIRHMRALELSFVAGLEQHARKGTVSLAFMWLLSGSKIANAIHLKDANRIDCSSPYCVVQDRVSANGWRGHTLK
Homology
[Close]
BLAST of Carg26302 vs. NCBI nr
Match: KAG7024275.1 (hypothetical protein SDJN02_13089, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 5.8e-45
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 

Query: 1  MKRSAVLLKFNHKSATPESLIRHMRALELSFVAGLEQHARKGTVSLAFMWLLSGSKIANA 60
          MKRSAVLLKFNHKSATPESLIRHMRALELSFVAGLEQHARKGTVSLAFMWLLSGSKIANA
Sbjct: 1  MKRSAVLLKFNHKSATPESLIRHMRALELSFVAGLEQHARKGTVSLAFMWLLSGSKIANA 60

Query: 61 IHLKDANRIDCSSPYCVVQDRVSANGWRGHTLK 94
          IHLKDANRIDCSSPYCVVQDRVSANGWRGHTLK
Sbjct: 61 IHLKDANRIDCSSPYCVVQDRVSANGWRGHTLK 93

[Close]
BLAST of Carg26302 vs. NCBI nr
Match: KAG6591398.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 54  GSKIANAIHLKDANRIDCSSPYCV 78
           GSKIANAIHLKDANRIDCSSPYCV
Sbjct: 622 GSKIANAIHLKDANRIDCSSPYCV 645

The following BLAST results are available for this feature:
BLAST of Carg26302 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7024275.15.8e-45100.00hypothetical protein SDJN02_13089, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591398.15.0e-04100.00F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg26302 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26302 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26302 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26302-RACarg26302-RAmRNA