Carg26293 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCAAGCGGTGCCGAGAATATCGAGAGAAGCAACTACCTAGTAGAAGCTCAATGGGGGTTTCATCGGCGCCGAAGCTCTCAGGGATGCAAAAGCAAGTGCTCAGTTTATACTGAGCATTTCTCCGAGCGGCTCGTTCCAAATCCGCCGAAGATCGAAAAAGGATTGAATCGGTTGTCTCCGCCGAGTTCCGCCGGAACGCCAAGCTAATCGATCGCAAGGATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAACAAACAATTGGATCAACTTAGAAGCCCTGCAACTGTTGGATTGTCAACGCTCACTCTCAATTCGTCTCCAACGCAAGATTCTGAGCATTGA ATGTTCAAGCGGTGCCGAGAATATCGAGAGAAGCAACTACCTAGTAGAAGCTCAATGGGGGTTTCATCGGCGCCGAAGCTCTCAGGGATGCAAAAGCAATTCCGCCGGAACGCCAAGCTAATCGATCGCAAGGATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAACAAACAATTGGATCAACTTAGAAGCCCTGCAACTGTTGGATTGTCAACGCTCACTCTCAATTCGTCTCCAACGCAAGATTCTGAGCATTGA ATGTTCAAGCGGTGCCGAGAATATCGAGAGAAGCAACTACCTAGTAGAAGCTCAATGGGGGTTTCATCGGCGCCGAAGCTCTCAGGGATGCAAAAGCAATTCCGCCGGAACGCCAAGCTAATCGATCGCAAGGATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAACAAACAATTGGATCAACTTAGAAGCCCTGCAACTGTTGGATTGTCAACGCTCACTCTCAATTCGTCTCCAACGCAAGATTCTGAGCATTGA MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQFRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH Homology
BLAST of Carg26293 vs. NCBI nr
Match: KAG7037165.1 (hypothetical protein SDJN02_00787, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
BLAST of Carg26293 vs. NCBI nr
Match: XP_022932494.1 (LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita moschata]) HSP 1 Score: 153.7 bits (387), Expect = 7.3e-34 Identity = 86/116 (74.14%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of Carg26293 vs. NCBI nr
Match: KAG6607523.1 (Succinate dehydrogenase assembly factor 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 151.4 bits (381), Expect = 3.6e-33 Identity = 85/116 (73.28%), Postives = 85/116 (73.28%), Query Frame = 0
BLAST of Carg26293 vs. NCBI nr
Match: XP_023525064.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023525065.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]) HSP 1 Score: 144.1 bits (362), Expect = 5.8e-31 Identity = 81/115 (70.43%), Postives = 84/115 (73.04%), Query Frame = 0
BLAST of Carg26293 vs. NCBI nr
Match: XP_022973401.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita maxima] >XP_022973402.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita maxima]) HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27 Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0
BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A6J1EX50 (LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111438897 PE=4 SV=1) HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34 Identity = 86/116 (74.14%), Postives = 86/116 (74.14%), Query Frame = 0
BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A6J1I7F5 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471950 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 6.5e-28 Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0
BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A7C8YJB1 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13 Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = 0
BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A7J7CXN8 (LYR family of Fe/S cluster biogenesis protein isoform 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00036 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13 Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 0
BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A7C8YJU0 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 4.5e-13 Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0
BLAST of Carg26293 vs. TAIR 10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein ) HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10 Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0
BLAST of Carg26293 vs. TAIR 10
Match: AT2G39725.2 (LYR family of Fe/S cluster biogenesis protein ) HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10 Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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