Carg26293 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26293
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
LocationCarg_Chr01: 5140584 .. 5140934 (+)
RNA-Seq ExpressionCarg26293
SyntenyCarg26293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAGCGGTGCCGAGAATATCGAGAGAAGCAACTACCTAGTAGAAGCTCAATGGGGGTTTCATCGGCGCCGAAGCTCTCAGGGATGCAAAAGCAAGTGCTCAGTTTATACTGAGCATTTCTCCGAGCGGCTCGTTCCAAATCCGCCGAAGATCGAAAAAGGATTGAATCGGTTGTCTCCGCCGAGTTCCGCCGGAACGCCAAGCTAATCGATCGCAAGGATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAACAAACAATTGGATCAACTTAGAAGCCCTGCAACTGTTGGATTGTCAACGCTCACTCTCAATTCGTCTCCAACGCAAGATTCTGAGCATTGA

mRNA sequence

ATGTTCAAGCGGTGCCGAGAATATCGAGAGAAGCAACTACCTAGTAGAAGCTCAATGGGGGTTTCATCGGCGCCGAAGCTCTCAGGGATGCAAAAGCAATTCCGCCGGAACGCCAAGCTAATCGATCGCAAGGATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAACAAACAATTGGATCAACTTAGAAGCCCTGCAACTGTTGGATTGTCAACGCTCACTCTCAATTCGTCTCCAACGCAAGATTCTGAGCATTGA

Coding sequence (CDS)

ATGTTCAAGCGGTGCCGAGAATATCGAGAGAAGCAACTACCTAGTAGAAGCTCAATGGGGGTTTCATCGGCGCCGAAGCTCTCAGGGATGCAAAAGCAATTCCGCCGGAACGCCAAGCTAATCGATCGCAAGGATTTCATCTACATCGAGTACCTTCTTCGTCGAGGTAACAAACAATTGGATCAACTTAGAAGCCCTGCAACTGTTGGATTGTCAACGCTCACTCTCAATTCGTCTCCAACGCAAGATTCTGAGCATTGA

Protein sequence

MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQFRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH
Homology
BLAST of Carg26293 vs. NCBI nr
Match: KAG7037165.1 (hypothetical protein SDJN02_00787, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQFRRNAKLIDRKDFIYIEYLLRRGNKQL 60
          MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQFRRNAKLIDRKDFIYIEYLLRRGNKQL
Sbjct: 1  MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQFRRNAKLIDRKDFIYIEYLLRRGNKQL 60

Query: 61 DQLRSPATVGLSTLTLNSSPTQDSEH 87
          DQLRSPATVGLSTLTLNSSPTQDSEH
Sbjct: 61 DQLRSPATVGLSTLTLNSSPTQDSEH 86

BLAST of Carg26293 vs. NCBI nr
Match: XP_022932494.1 (LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita moschata])

HSP 1 Score: 153.7 bits (387), Expect = 7.3e-34
Identity = 86/116 (74.14%), Postives = 86/116 (74.14%), Query Frame = 0

Query: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ--------------------------- 60
           MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ                           
Sbjct: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQVLSLYXAFLRAARSKSAEDRKRIESVV 60

Query: 61  ---FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH 87
              FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH
Sbjct: 61  SAEFRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH 116

BLAST of Carg26293 vs. NCBI nr
Match: KAG6607523.1 (Succinate dehydrogenase assembly factor 1, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 3.6e-33
Identity = 85/116 (73.28%), Postives = 85/116 (73.28%), Query Frame = 0

Query: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ--------------------------- 60
           MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ                           
Sbjct: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQVLSLYRAFLRAARSKSAEDRKRIESVV 60

Query: 61  ---FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH 87
              FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNS PTQDSEH
Sbjct: 61  SAEFRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSYPTQDSEH 116

BLAST of Carg26293 vs. NCBI nr
Match: XP_023525064.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023525065.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.1 bits (362), Expect = 5.8e-31
Identity = 81/115 (70.43%), Postives = 84/115 (73.04%), Query Frame = 0

Query: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ--------------------------- 60
           MFKRCREYREKQLP RSSMGVSSAPKLSGMQ+Q                           
Sbjct: 9   MFKRCREYREKQLPGRSSMGVSSAPKLSGMQRQVLSLYRAFLRAARSKSAEDRRQIESVV 68

Query: 61  ---FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSE 86
              FRRNAKLIDRK+FIYIEYLLRRGNKQLDQLRSPATVGLS+LTLNSSPTQDSE
Sbjct: 69  SAEFRRNAKLIDRKNFIYIEYLLRRGNKQLDQLRSPATVGLSSLTLNSSPTQDSE 123

BLAST of Carg26293 vs. NCBI nr
Match: XP_022973401.1 (succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita maxima] >XP_022973402.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0

Query: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ--------------------------- 60
           MFKR REYREKQL SRSSMGVSSAPKLSGMQ Q                           
Sbjct: 13  MFKRYREYREKQLRSRSSMGVSSAPKLSGMQMQVLSLYRAFLRAARSKSAEDRKGIESVV 72

Query: 61  ---FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSE 86
              FRRNAKLID K+FIYIEYLLRRG+KQLDQLRSPATVGLS+LTLNSSPTQDSE
Sbjct: 73  SAEFRRNAKLIDHKNFIYIEYLLRRGDKQLDQLRSPATVGLSSLTLNSSPTQDSE 127

BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A6J1EX50 (LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111438897 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.5e-34
Identity = 86/116 (74.14%), Postives = 86/116 (74.14%), Query Frame = 0

Query: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ--------------------------- 60
           MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ                           
Sbjct: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQVLSLYXAFLRAARSKSAEDRKRIESVV 60

Query: 61  ---FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH 87
              FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH
Sbjct: 61  SAEFRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH 116

BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A6J1I7F5 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471950 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.5e-28
Identity = 78/115 (67.83%), Postives = 81/115 (70.43%), Query Frame = 0

Query: 1   MFKRCREYREKQLPSRSSMGVSSAPKLSGMQKQ--------------------------- 60
           MFKR REYREKQL SRSSMGVSSAPKLSGMQ Q                           
Sbjct: 13  MFKRYREYREKQLRSRSSMGVSSAPKLSGMQMQVLSLYRAFLRAARSKSAEDRKGIESVV 72

Query: 61  ---FRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSE 86
              FRRNAKLID K+FIYIEYLLRRG+KQLDQLRSPATVGLS+LTLNSSPTQDSE
Sbjct: 73  SAEFRRNAKLIDHKNFIYIEYLLRRGDKQLDQLRSPATVGLSSLTLNSSPTQDSE 127

BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A7C8YJB1 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 11  KQLPSRSSMGVSSAPKLSGMQKQ------------------------------FRRNAKL 70
           K+LP  ++MG SS P+LSGMQKQ                              FRRN+K 
Sbjct: 6   KKLPKTNAMGSSSGPRLSGMQKQVLSLYRGFLRAARSKSAEDRRRIESIVSEEFRRNSKE 65

Query: 71  IDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDS 85
           +DRK+F+YIEYLLRRG KQLDQL+SP  V LS++ ++ +PT+DS
Sbjct: 66  VDRKNFVYIEYLLRRGKKQLDQLKSPDIVSLSSIKVSQNPTKDS 109

BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A7J7CXN8 (LYR family of Fe/S cluster biogenesis protein isoform 1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00036 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.4e-13
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 0

Query: 19 MGVSSAPKLSGMQKQ------------------------------FRRNAKLIDRKDFIY 78
          MG S AP+LSGMQKQ                              FR N+K +DRK+F+Y
Sbjct: 1  MGTSKAPRLSGMQKQVLSLYRGFLRAVRSKSPEDRHRIESIVSAEFRSNSKQVDRKNFLY 60

Query: 79 IEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDSEH 87
          IEYLLRRG KQLDQL+SP TVG+S+L ++SS   DS+H
Sbjct: 61 IEYLLRRGKKQLDQLKSPDTVGMSSLNVSSSEADDSKH 98

BLAST of Carg26293 vs. ExPASy TrEMBL
Match: A0A7C8YJU0 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.5e-13
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 11  KQLPSRSSMGVSSAPKLSGMQKQ------------------------------FRRNAKL 70
           K+LP  ++MG SS P+LSGMQKQ                              FRR++K 
Sbjct: 6   KKLPKTNAMGSSSGPRLSGMQKQVLSLYRGFLRAARSKSAEDRRRIESIVSEEFRRDSKE 65

Query: 71  IDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPTQDS 85
           +DRK+F+YIEYLLRRG KQLDQL+SP  V LS++ ++ +PT+DS
Sbjct: 66  VDRKNFVYIEYLLRRGKKQLDQLKSPDIVSLSSIKVSQNPTKDS 109

BLAST of Carg26293 vs. TAIR 10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 33 QFRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPT 82
          +FR N+K +DRK+F YIEYLLR G KQLDQL+SPA V LS++ + +S T
Sbjct: 42 EFRHNSKEVDRKNFQYIEYLLRLGTKQLDQLKSPAIVSLSSIKVVTSKT 90

BLAST of Carg26293 vs. TAIR 10
Match: AT2G39725.2 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0

Query: 33 QFRRNAKLIDRKDFIYIEYLLRRGNKQLDQLRSPATVGLSTLTLNSSPT 82
          +FR N+K +DRK+F YIEYLLR G KQLDQL+SPA V LS++ + +S T
Sbjct: 42 EFRHNSKEVDRKNFQYIEYLLRLGTKQLDQLKSPAIVSLSSIKVVTSKT 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7037165.11.3e-38100.00hypothetical protein SDJN02_00787, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022932494.17.3e-3474.14LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial [C... [more]
KAG6607523.13.6e-3373.28Succinate dehydrogenase assembly factor 1, mitochondrial, partial [Cucurbita arg... [more]
XP_023525064.15.8e-3170.43succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. ... [more]
XP_022973401.11.3e-2767.83succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita maxima] >XP_... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EX503.5e-3474.14LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial OS... [more]
A0A6J1I7F56.5e-2867.83succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucurbita maxima OX=... [more]
A0A7C8YJB11.2e-1346.15Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7J7CXN83.4e-1347.96LYR family of Fe/S cluster biogenesis protein isoform 1 OS=Tripterygium wilfordi... [more]
A0A7C8YJU04.5e-1345.19Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G39725.13.5e-1061.22LYR family of Fe/S cluster biogenesis protein [more]
AT2G39725.23.5e-1061.22LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26293-RACarg26293-RAmRNA