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Carg26250 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAGTCTAGAAGCATGAAGAGAAAGAACGGTATCAAGGTCGTCGTTGAGAAGTTGCAAAAGAGCCTATCTCGAGGTCGAAAACCGAGTAGTGAGAATAGTTATGAGGATTTCGATGAAGTTGTGGACTCGACGTCGGTACCAGAGGACGTGAAAGAAGGGCATTTTGCAGTGGTGGCGGTGGACGGGGAGGGGCCGAAACGATTCGTTGTTCCGTTGAGTTGTTTGACACATCCTATGTTCTTGAGGCTGTTGGAGCAAGCAGCTGAGGAGTATGGGTTTGATCATGAAGGTGCATTGACAATCCCATGTCAGCCATGTGAGGTTGAGAATATTTTGGCTGAGCAATGGAAGTTAGAGTCTAAAAGAGATTCTAGAGATGCATTTACTTGGGGAACTTTGTGTAAAGCCATTATTCAAAGTTATTGA ATGGCCAAGTCTAGAAGCATGAAGAGAAAGAACGGTATCAAGGTCGTCGTTGAGAAGTTGCAAAAGAGCCTATCTCGAGGTCGAAAACCGAGTAGTGAGAATAGTTATGAGGATTTCGATGAAGTTGTGGACTCGACGTCGGTACCAGAGGACGTGAAAGAAGGGCATTTTGCAGTGGTGGCGGTGGACGGGGAGGGGCCGAAACGATTCGTTGTTCCGTTGAGTTGTTTGACACATCCTATGTTCTTGAGGCTGTTGGAGCAAGCAGCTGAGGAGTATGGGTTTGATCATGAAGGTGCATTGACAATCCCATGTCAGCCATGTGAGGTTGAGAATATTTTGGCTGAGCAATGGAAGTTAGAGTCTAAAAGAGATTCTAGAGATGCATTTACTTGGGGAACTTTGTGTAAAGCCATTATTCAAAGTTATTGA ATGGCCAAGTCTAGAAGCATGAAGAGAAAGAACGGTATCAAGGTCGTCGTTGAGAAGTTGCAAAAGAGCCTATCTCGAGGTCGAAAACCGAGTAGTGAGAATAGTTATGAGGATTTCGATGAAGTTGTGGACTCGACGTCGGTACCAGAGGACGTGAAAGAAGGGCATTTTGCAGTGGTGGCGGTGGACGGGGAGGGGCCGAAACGATTCGTTGTTCCGTTGAGTTGTTTGACACATCCTATGTTCTTGAGGCTGTTGGAGCAAGCAGCTGAGGAGTATGGGTTTGATCATGAAGGTGCATTGACAATCCCATGTCAGCCATGTGAGGTTGAGAATATTTTGGCTGAGCAATGGAAGTTAGAGTCTAAAAGAGATTCTAGAGATGCATTTACTTGGGGAACTTTGTGTAAAGCCATTATTCAAAGTTATTGA MAKSRSMKRKNGIKVVVEKLQKSLSRGRKPSSENSYEDFDEVVDSTSVPEDVKEGHFAVVAVDGEGPKRFVVPLSCLTHPMFLRLLEQAAEEYGFDHEGALTIPCQPCEVENILAEQWKLESKRDSRDAFTWGTLCKAIIQSY Homology
BLAST of Carg26250 vs. NCBI nr
Match: KAG7019267.1 (hypothetical protein SDJN02_18227, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 290.8 bits (743), Expect = 6.4e-75 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg26250 vs. NCBI nr
Match: KAG6583559.1 (hypothetical protein SDJN03_19491, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74 Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0
BLAST of Carg26250 vs. NCBI nr
Match: XP_023520338.1 (auxin-responsive protein SAUR72-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 287.7 bits (735), Expect = 5.4e-74 Identity = 142/143 (99.30%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg26250 vs. NCBI nr
Match: XP_022970276.1 (auxin-responsive protein SAUR72-like [Cucurbita maxima]) HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg26250 vs. NCBI nr
Match: XP_022964961.1 (auxin-responsive protein SAUR72-like [Cucurbita moschata]) HSP 1 Score: 286.2 bits (731), Expect = 1.6e-73 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11 Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy Swiss-Prot
Match: P0DKL1 (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.3e-09 Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy Swiss-Prot
Match: O22150 (Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.2e-09 Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy Swiss-Prot
Match: Q9SL45 (Protein SMALL AUXIN UP-REGULATED RNA 10 OS=Arabidopsis thaliana OX=3702 GN=SAUR10 PE=2 SV=1) HSP 1 Score: 62.8 bits (151), Expect = 3.7e-09 Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy TrEMBL
Match: A0A6J1I062 (auxin-responsive protein SAUR72-like OS=Cucurbita maxima OX=3661 GN=LOC111469290 PE=3 SV=1) HSP 1 Score: 286.6 bits (732), Expect = 5.8e-74 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy TrEMBL
Match: A0A6J1HKE4 (auxin-responsive protein SAUR72-like OS=Cucurbita moschata OX=3662 GN=LOC111464912 PE=3 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 7.6e-74 Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy TrEMBL
Match: A0A0A0LSM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G103250 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64 Identity = 126/143 (88.11%), Postives = 134/143 (93.71%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy TrEMBL
Match: A0A5D3DDN6 (Auxin-responsive protein SAUR72-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00580 PE=3 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.5e-64 Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0
BLAST of Carg26250 vs. ExPASy TrEMBL
Match: A0A1S3CK34 (auxin-responsive protein SAUR72-like OS=Cucumis melo OX=3656 GN=LOC103501357 PE=3 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.5e-64 Identity = 125/143 (87.41%), Postives = 133/143 (93.01%), Query Frame = 0
BLAST of Carg26250 vs. TAIR 10
Match: AT2G28085.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 106.7 bits (265), Expect = 1.6e-23 Identity = 65/126 (51.59%), Postives = 77/126 (61.11%), Query Frame = 0
BLAST of Carg26250 vs. TAIR 10
Match: AT3G09870.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19 Identity = 53/102 (51.96%), Postives = 65/102 (63.73%), Query Frame = 0
BLAST of Carg26250 vs. TAIR 10
Match: AT1G19830.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13 Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 0
BLAST of Carg26250 vs. TAIR 10
Match: AT2G21220.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 72.0 bits (175), Expect = 4.3e-13 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0
BLAST of Carg26250 vs. TAIR 10
Match: AT4G34760.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 71.2 bits (173), Expect = 7.4e-13 Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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