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Carg26246 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GATCCTAAGATTCTCGAGGCTGCTCTATTCACTTCGATTCTACTGATCTTGAGGAAGTTCGGAATTCTTTGGTTTTCGAAGTTTCTGGTAGTGAAAAGGAGAGAAATGGAGAAAATGATGAACGTCTTGAAGCCCAAACCAAATCCGCAGCAGCAGCTGAGGGATTGGCAGCGTAGGCTCCGACAAGAGTGCCGCAACTTTGAACGTCAAATTCGAGGTAACGGATCGTATTTTGGTATTTTCAATTTCATTTTGATTCGTGTTATCTTTTATGCATTTGTGCGTTACAGCCTTGAAATTGTAACCATGCAATGATTCATCTTCTACCTTTAGGGATTCTTTAAGTATGTATGTGTTTTTCATTTGATTTGATTTGTTCTTTCTCGAATTGGTTTTGGCCAGATATAGAGAGAGAAGAGAAAAATGTGCAGAAAGCCATTAAGGATGCTGCCAAGAGGAATGATATGGTCTCTGCAAAGGTATGTTAAGAGCTTTCTTTGTGTTAAACTTTCTGATTAGGAGTTTCATAATAAAGAAACAAATTCTAACCAGGGGGAATTTTCCCTAATCCACTTCGGGGAGTAGGGGGAGGGAGATTCTATCATTCATCATTTGCATTGCTGAATTACATTTTGTTCCAGTGAGAACTTTGGCTAAGATGGCTGGTTTCAGTTTGATATTGAGAGTTCCTATTTAATTGCTAGCATTAGGGTTCATTTGAATGTGGACACTGGCACTTATTTGTGTGATATGATCTATATTCTCAGTGGATTAGGGGAAAAATGATCTATAATTTAGTACACTGGACCTAATCCCTAATTGTTTCTGCATGGAATTATGTACTATCTCTTCTTGTTTAAAATTTCCCTGTATTTGTGTTTCAGGCACTGGCCAAAGAAATTGTTAGGTCTAGAAAAACTGTGAACCGTCTTCACGAAAATAAGGCATAGGTTAATTCGATATCCATGCACCTTGGTGAAAGTATTGGTATGATGTTTTTCATATTCTAAAACTTGCAGAAACTTTTAGGTCTCTTTGTTGTCTTATCTGCTTCAACAACCTAATTAAATGTGGAGATTTTCTTACATTGTTGAGTCAGGGTAGATGTTTGATGATTATGACTAGCTCTACTGTAACTAGAGTTTATTGTAAACAAAATATATATATATATATATTATATATATATATATATGATAAGGGAATCACTACAAGGGGAGTAAGATTCGGATTACCTTGTTGATCGAATATCTCAAAGCAAGAACACTTGTTTGAGGTTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAAGCAAGAACACTTGTTTGAGTTCTTGCCTTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCAAGCTTGAATGATTCTACATGCAACCTAAACTACAGCTATTGGCTAAAGGAAAGCACAAATGCTCATTTTACTACATTTTCCAAGTCTCCCTTACAAAGTTAACATACATGGCTTTATATAGCCTCAAAATGAAACCCTTGATCTTCCATTAGACATTTCAAGAGTTTGTAACATTCATACTTTATGACCATAATTAGCCACTATGTATGCTTTATGACCATAATTAGCCACTATGTATACTTTATGACTATAATTAGCCACTATGTAAATGTAATTGTAAAATAAGTAAAAAGTCTTAAAATACATTAATGAAATACAATAACTCTAAATTACTCTAAATTGTAATCCACCCAAAATTTATAACAATGAATCTTCATTCTTCTTCGATGTGGCATGAATTGAAATATCTTTTGACAATTTCAACAACTTTTTCTTCACATCTTCATTGAAGTATATTGTATGATTGATGTCTCTTGGTTCAATTCAGTATATCTTATATATAACAATACAAATTACAAAGCTTTAGGTGGTATTAAATTTAAAAGTATAGGGAGGGAAGGTGAAGAGGAAGGGATTCTTGTGTTCTGCTTTTTTTATTGAAATGCAATGCAACATAATATGAACATTGATCCATTACCATTGTTATTTTCTATGTTAAGGTGCAATTTATTTTTTCTCTAAGAGTTTCAAATATGATCAAACGTCTGCGTTTCTAGATACCTTTGTTTGAAAGCCTGCCAATTTTGCAGCCATTGCGAGAACAGTTGGGCATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATCTGATGAAGGCCCCAGAAATGGCAACTACAATGCGAGAGTTTGGCAAGGAGATGACTAAGGTTTCTTTTTTAAGAATAGAAACAATTTCTTTCGCCTCTGTTTGGGTTATGAACTTAGAGCTGACGTAGACTTGGTTGAACATTATTATTAATTAGCTCCTTTTTTACATTTAGATAAGAATCTTTTTTTAATTAGGCTACATTTTTTTTATAAGAGACAATTTCATTAATGTTTGAAATTTATAAAAGGGATGTACTATCCATGATGTTTACGAGAGATCTTCTCAATTTATAATGAGAGGTATGACTATAGGAAGCAAAAATTTAGACAATTTACACTAAGATATAGCATGATAAACTATGTTGTCAAAGAGTTTCGTTTAAGTCTATGCCTTTTCCGCGAAAACTCTTTAACTGGTTTTGTCAAAATGATGTTACATTTTCTCCATCCTGGTTCCTTATAACTGGTTTTTTAGTTTGTTTTCATTTGGTAGAATGGGGGGGGGGGGAATCCTATAATACTACCTTTTGTTTTGTTTTGTTTGTTTGTTTTTTTGCTATAGATTTATAAATAAGAAACATCAATAACTTTGGATTAACACAGAAGAAACAACCTAAGAGCCGGTGTAGAGGGAAGCTCCTCCTGAAGAATGTATGCTAGAGCTTTTTAAAGAGGCTATAATTATAAAAGAATTTTGGTAGTTTGAACACAACCATACATTATATACTACACTTCTTTAAATCCTTATGCTCGTCTTCCGTTTGTGAACATGTATTTAAAGGATGCTTGCAGTCTTATTGTCAAGTCTTCGTTCTCTGTTTAACTTGCCAAACACAACTGAATTTGTATGTTTTCTTAGACAGTGCTACAATCTCTCGTTAATATAGCTGTTACTGATATCTGGTGTCTATAGGCTGGGGTGATTGAGGAAATTGTAAATGATGCGTTGAATTCAGCACTGGATTCTGAGGATATTGAAGAGGAGATAGAAGAGGAAGTTGACAAAGTTTTGACTGCCATCGCTGGTGAGACCGCTGCACAGCTTCCAGAAGCTGTCAGGAAGGAAAGAATGAAGCAACCGGCTCGTGTGCAGGAAGTCCGGAGAGAGGTATAATGCATATTTTTGAGTACTCATGAAACTTGATCCTGTTCTGGTTCTACCATGGGAATGTGAAAAGAATAAAACATCGTGACATATTTATTCCTTTGCAGGAAGAAGCAATAGCTGAGGGTGTTGACGATGAGGAAGAACTAGAAGAAATAAGGGCTCGGCTAGCAAAAGTTAGATCATAAATTCGAAATTTCACATAAGAATGTCAAAATGGTCGTAACTCGGTTTGAGCCTCAACATTACATTACTTTTTTCCTGGTATTTTGTGAGAGAGAAAATGAGTGACATACTGACCTTTGGCTGCATGTTTGTTCAATCAAGATTCATAAAACCAAGACTATATTTGTCAAATAGATAGGGACGGGGTGGAGCGGGGACTAACTGTTTGATGTATATTGTTTCTTCTTAAAAGAATGCAAATGAAGCATTGTTCTATCATCTTATATCTGTGTAAATGCAGTGTGTTTCTTTC GATCCTAAGATTCTCGAGGCTGCTCTATTCACTTCGATTCTACTGATCTTGAGGAAGTTCGGAATTCTTTGGTTTTCGAAGTTTCTGGTAGTGAAAAGGAGAGAAATGGAGAAAATGATGAACGTCTTGAAGCCCAAACCAAATCCGCAGCAGCAGCTGAGGGATTGGCAGCGTAGGCTCCGACAAGAGTGCCGCAACTTTGAACGTCAAATTCGAGATATAGAGAGAGAAGAGAAAAATGTGCAGAAAGCCATTAAGGATGCTGCCAAGAGGAATGATATGGTCTCTGCAAAGGCACTGGCCAAAGAAATTGTTAGGTCTAGAAAAACTGTGAACCGTCTTCACGAAAATAAGGCATAGGTTAATTCGATATCCATGCACCTTGGTGAAAGTATTGCCATTGCGAGAACAGTTGGGCATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATCTGATGAAGGCCCCAGAAATGGCAACTACAATGCGAGAGTTTGGCAAGGAGATGACTAAGGCTGGGGTGATTGAGGAAATTGTAAATGATGCGTTGAATTCAGCACTGGATTCTGAGGATATTGAAGAGGAGATAGAAGAGGAAGTTGACAAAGTTTTGACTGCCATCGCTGGTGAGACCGCTGCACAGCTTCCAGAAGCTGTCAGGAAGGAAAGAATGAAGCAACCGGCTCGTGTGCAGGAAGTCCGGAGAGAGGAAGAAGCAATAGCTGAGGGTGTTGACGATGAGGAAGAACTAGAAGAAATAAGGGCTCGGCTAGCAAAAGTTAGATCATAAATTCGAAATTTCACATAAGAATGTCAAAATGGTCGTAACTCGGTTTGAGCCTCAACATTACATTACTTTTTTCCTGGTATTTTGTGAGAGAGAAAATGAGTGACATACTGACCTTTGGCTGCATGTTTGTTCAATCAAGATTCATAAAACCAAGACTATATTTGTCAAATAGATAGGGACGGGGTGGAGCGGGGACTAACTGTTTGATGTATATTGTTTCTTCTTAAAAGAATGCAAATGAAGCATTGTTCTATCATCTTATATCTGTGTAAATGCAGTGTGTTTCTTTC ATGCACCTTGGTGAAAGTATTGCCATTGCGAGAACAGTTGGGCATCTTTCCAAGAGTGCTGAAGTTATGAAGCTTGTTAATAATCTGATGAAGGCCCCAGAAATGGCAACTACAATGCGAGAGTTTGGCAAGGAGATGACTAAGGCTGGGGTGATTGAGGAAATTGTAAATGATGCGTTGAATTCAGCACTGGATTCTGAGGATATTGAAGAGGAGATAGAAGAGGAAGTTGACAAAGTTTTGACTGCCATCGCTGGTGAGACCGCTGCACAGCTTCCAGAAGCTGTCAGGAAGGAAAGAATGAAGCAACCGGCTCGTGTGCAGGAAGTCCGGAGAGAGGAAGAAGCAATAGCTGAGGGTGTTGACGATGAGGAAGAACTAGAAGAAATAAGGGCTCGGCTAGCAAAAGTTAGATCATAA MHLGESIAIARTVGHLSKSAEVMKLVNNLMKAPEMATTMREFGKEMTKAGVIEEIVNDALNSALDSEDIEEEIEEEVDKVLTAIAGETAAQLPEAVRKERMKQPARVQEVRREEEAIAEGVDDEEELEEIRARLAKVRS Homology
BLAST of Carg26246 vs. NCBI nr
Match: KAG7019271.1 (Vacuolar protein sorting-associated protein 24-like 1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 247.3 bits (630), Expect = 7.8e-62 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Carg26246 vs. NCBI nr
Match: XP_022964907.1 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X2 [Cucurbita moschata]) HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60 Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of Carg26246 vs. NCBI nr
Match: XP_022964906.1 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 [Cucurbita moschata]) HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60 Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of Carg26246 vs. NCBI nr
Match: XP_022970267.1 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 [Cucurbita maxima]) HSP 1 Score: 240.0 bits (611), Expect = 1.3e-59 Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg26246 vs. NCBI nr
Match: XP_022970268.1 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X2 [Cucurbita maxima]) HSP 1 Score: 240.0 bits (611), Expect = 1.3e-59 Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy Swiss-Prot
Match: Q9FFB3 (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS24-1 PE=1 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 1.4e-53 Identity = 116/139 (83.45%), Postives = 129/139 (92.81%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy Swiss-Prot
Match: Q9LXH5 (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=VPS24-2 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 5.3e-45 Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy Swiss-Prot
Match: Q9CQ10 (Charged multivesicular body protein 3 OS=Mus musculus OX=10090 GN=Chmp3 PE=1 SV=3) HSP 1 Score: 84.3 bits (207), Expect = 1.2e-15 Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy Swiss-Prot
Match: Q9Y3E7 (Charged multivesicular body protein 3 OS=Homo sapiens OX=9606 GN=CHMP3 PE=1 SV=3) HSP 1 Score: 83.2 bits (204), Expect = 2.6e-15 Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy Swiss-Prot
Match: Q8CGS4 (Charged multivesicular body protein 3 OS=Rattus norvegicus OX=10116 GN=Chmp3 PE=1 SV=3) HSP 1 Score: 82.8 bits (203), Expect = 3.4e-15 Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy TrEMBL
Match: A0A6J1HK92 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464872 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 7.2e-61 Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy TrEMBL
Match: A0A6J1HIY4 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464872 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 7.2e-61 Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy TrEMBL
Match: A0A6J1HYM6 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469281 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 6.1e-60 Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy TrEMBL
Match: A0A6J1I3E7 (vacuolar protein sorting-associated protein 24 homolog 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469281 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 6.1e-60 Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of Carg26246 vs. ExPASy TrEMBL
Match: A0A6J1DJ20 (vacuolar protein sorting-associated protein 24 homolog 1 OS=Momordica charantia OX=3673 GN=LOC111020496 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 4.3e-58 Identity = 131/139 (94.24%), Postives = 135/139 (97.12%), Query Frame = 0
BLAST of Carg26246 vs. TAIR 10
Match: AT5G22950.1 (SNF7 family protein ) HSP 1 Score: 210.3 bits (534), Expect = 9.9e-55 Identity = 116/139 (83.45%), Postives = 129/139 (92.81%), Query Frame = 0
BLAST of Carg26246 vs. TAIR 10
Match: AT3G45000.1 (SNF7 family protein ) HSP 1 Score: 181.8 bits (460), Expect = 3.8e-46 Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 0
BLAST of Carg26246 vs. TAIR 10
Match: AT3G45000.2 (SNF7 family protein ) HSP 1 Score: 181.8 bits (460), Expect = 3.8e-46 Identity = 105/139 (75.54%), Postives = 118/139 (84.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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