Carg26241 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26241
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	arabinogalactan peptide 23-like
Location	Carg_Chr13: 2113563 .. 2113748 (-)
RNA-Seq Expression	Carg26241
Synteny	Carg26241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACTAGCGGAGCCACCGCCGGGCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA

mRNA sequence

ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACTAGCGGAGCCACCGCCGGGCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA

Coding sequence (CDS)

ATGGAGATGAAGAAGATCACCTGCGCCATTCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTTGCTCATGATGAGGCAGCGGCTCCAGCACCTGGACCAACTAGCGGAGCCACCGCCGGGCTTCCGGCAATCGGCTCTCTCATCGGCGCTTCGTTGCTCTCCGTCGCGGCCTACTACTTGCAATGA

Protein sequence

MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ

Homology

[Close]

BLAST of Carg26241 vs. NCBI nr
Match: KAG7019275.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-20
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL
Sbjct: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEM KITCAILFAAATVSAVVAHDEAAAPAPGPTSGAT GLPAIGSLIGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. NCBI nr
Match: KAG7036581.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 8.0e-19
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKI CAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAI SLIGASLLSVAAYY 
Sbjct: 1  MEMKKINCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAISSLIGASLLSVAAYYF 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. NCBI nr
Match: XP_022983304.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA AGLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. NCBI nr
Match: XP_038905644.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 7.5e-17
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKI CA+LFAAATVSA VAHDEA APAPGP+SGA  GLPAIGS+IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 5.2e-13
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKI C +LFAAA+++AV+A +E  APAPGP S A+A LPA+GSL+GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Carg26241 vs. ExPASy TrEMBL
Match: A0A6J1K873 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.8e-20
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEM KITCAILFAAATVSAVVAHDEAAAPAPGPTSGAT GLPAIGSLIGASLLSVAAYYL
Sbjct: 1  MEMNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. ExPASy TrEMBL
Match: A0A6J1J6Y9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.6e-18
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKI CA+LFAAATVSAVVAHDEA APAPGP+SGA AGLPAIGS IGASLLSVAAYYL
Sbjct: 1  MEMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. ExPASy TrEMBL
Match: A0A6J1HQG2 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.2e-17
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKITCA+LFAAATV+A VA +EA+APAPGPTS AT GLPAIGSLIGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. ExPASy TrEMBL
Match: A0A6J1F209 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438746 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.2e-17
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKITCA+LFAAATV+A VA +EA+APAPGPTS AT GLPAIGSLIGASLLSVAAYYL
Sbjct: 1  MEMKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYL 60

Query: 61 Q 62
          Q
Sbjct: 61 Q 61

[Close]

BLAST of Carg26241 vs. ExPASy TrEMBL
Match: A0A5A7U280 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00270 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.6e-15
Identity = 50/60 (83.33%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKI CAILFAAATVSA VA D+A APAPGP+SGA  GLPAIGSL+GASLLS AAYYL
Sbjct: 1  MEMKKIACAILFAAATVSAAVAEDKALAPAPGPSSGAAIGLPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of Carg26241 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 74.3 bits (181), Expect = 3.7e-14
Identity = 39/60 (65.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYL 60
          MEMKKI C +LFAAA+++AV+A +E  APAPGP S A+A LPA+GSL+GASL+S+ +YYL
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of Carg26241 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 6.6e-11
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MEMKKITCAILFAAATVSAVVAHDEAAAPAPGP-TSGATAGLPAIGSLIGASLLSVAAYY 60
          MEMKKI C ++FAAA+++AV+A  E  APAPGP  SGA+  +PA+GSL+GASL+S+ AYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMA-AEVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

The following BLAST results are available for this feature:

BLAST of Carg26241 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019275.1	1.5e-20	100.00	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022998512.1	1.6e-19	96.72	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7036581.1	8.0e-19	95.08	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022983304.1	1.2e-17	90.16	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
XP_038905644.1	7.5e-17	86.89	arabinogalactan protein 23-like [Benincasa hispida]	[more]

BLAST of Carg26241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	5.2e-13	65.00	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Carg26241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K873	7.8e-20	96.72	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4...	[more]
A0A6J1J6Y9	5.6e-18	90.16	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4...	[more]
A0A6J1HQG2	6.2e-17	86.89	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4...	[more]
A0A6J1F209	6.2e-17	86.89	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111438746 PE...	[more]
A0A5A7U280	7.6e-15	83.33	Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Carg26241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	3.7e-14	65.00	arabinogalactan protein 23	[more]
AT2G41905.1	6.6e-11	62.30	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..61
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26241-RA	Carg26241-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane