Carg26180 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26180
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X3
LocationCarg_Chr16: 9281587 .. 9282776 (+)
RNA-Seq ExpressionCarg26180
SyntenyCarg26180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATTTCTTTCTTTTATTATCTCATCTCAAATCTATAAGGTTTTGTTCGTAATATCAGGTTTTGGGGAATAATTTTATTCCCGAGCTACGTGAGATCATCGATCCAAGGTATCGTGTAACGTTTTATGTTCTCTGTACTCTACTTTCATCGTTGTACTTTTAAATTTGTTCATGTTGGTCAGTGTACTTTCAAATGACATTTTAGTCGTACTCCTACTTTTAAACGATGCTAAATTAATAAAAATACTCATCAATTTTCAAAAGTTTCAATAATCTCCCTGAACTTTAAAAAAAAAAAAAAAAAAAAACATTTGTAATTAGTTTCGGAGGGAAACCGTTAATACTCTATTTAAAAAATACCCTAGAGTTTTCAAATTTTCATTCCGTCTTCAACTTTTTTAAAAATTTCAAAATTAATCTTATCGGCAGTAGTACCGTGTCTAAAAAATACTATTGAAATTTAAAAATTAATATTAAAAATAGATAATCTCTAAAATGTCAGACTGTAAAAATATTTTTGAATTTTTATTTTTAATAATAGTTTAAAATTTCATAAATATTTTTTAAATATAATACCACGAATAAACACATTTTTAAAAAAAAGTTAACTAGTTTTATTGAAATTTTAAAATTTAAATTTTATGACAGTGTAACATGTTTCGTGAATAAGTATGATCTTTAAATTAATTATATATAAAACAAAAAAAAAAAAAAACCCGACAATTCTACCAAATCCGACTCAAAAATAGAGGGTCAGGTTGGGTTGTGAACCCTACTTGGATGGTTCGGGGCATTAATTCAACTAATCCGAAGTTAGTTCGAAAGATTTTCCTAACCCAACTGAACCCAATCTAACCCGTGTACATCCCGATACTCGATTGATTGACATAATAAATTAAATTTGCAGTAATTTACCAAGTTTCCTTGGTGGAAATTGTTGCTGTTCTGAATATGGAGGCTGCCTTTCAAGTGATAGAGGTCCATGGAACAACCCTGCGATTCTAGCCATGGTTCAGGTCATTTTTTAAATTCTTAATTATCTCAAATAATATTTTTATTGAAAAAAAAAAAGGCTATTTAATAAAATATTTATTTGATTTATTTTTAACAGGTTCTCTCTTCGGCTGATGAAACTTATGATAACGAACAAGAAAGTGGTTTGGCTTTGGAAGATGCTCGCCTAGACAAT

mRNA sequence

TTTATTTCTTTCTTTTATTATCTCATCTCAAATCTATAAGGTTTTGTTCGTAATATCAGGTTTTGGGGAATAATTTTATTCCCGAGCTACGTGAGATCATCGATCCAAGGCTGCCTTTCAAGTGATAGAGGTCCATGGAACAACCCTGCGATTCTAGCCATGGTTCAGGTTCTCTCTTCGGCTGATGAAACTTATGATAACGAACAAGAAAGTGGTTTGGCTTTGGAAGATGCTCGCCTAGACAAT

Coding sequence (CDS)

ATGGTTCAGGTTCTCTCTTCGGCTGATGAAACTTATGATAACGAACAAGAAAGTGGTTTGGCTTTGGAAGATGCTCGCCTAGACAAT

Protein sequence

MVQVLSSADETYDNEQESGLALEDARLDN
Homology
[Close]
BLAST of Carg26180 vs. NCBI nr
Match: KAG6577690.1 (Phosphatidylinositol/phosphatidylcholine transfer protein SFH11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MVQVLSSADETYDNEQESGLALEDARLDN 30
           MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 319 MVQVLSSADETYDNEQESGLALEDARLDN 347

[Close]
BLAST of Carg26180 vs. NCBI nr
Match: XP_022923478.1 (phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X3 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MVQVLSSADETYDNEQESGLALEDARLDN 30
           MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 264 MVQVLSSADETYDNEQESGLALEDARLDN 292

[Close]
BLAST of Carg26180 vs. NCBI nr
Match: XP_022923476.1 (phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X2 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MVQVLSSADETYDNEQESGLALEDARLDN 30
           MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 319 MVQVLSSADETYDNEQESGLALEDARLDN 347

[Close]
BLAST of Carg26180 vs. NCBI nr
Match: XP_022923475.1 (phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X1 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MVQVLSSADETYDNEQESGLALEDARLDN 30
           MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 353 MVQVLSSADETYDNEQESGLALEDARLDN 381

[Close]
BLAST of Carg26180 vs. NCBI nr
Match: KAG7015731.1 (hypothetical protein SDJN02_23368, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MVQVLSSADETYDNEQESGLALEDARLDN 30
          MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 1  MVQVLSSADETYDNEQESGLALEDARLDN 29

[Close]
BLAST of Carg26180 vs. ExPASy TrEMBL
Match: A0A6J1E6W9 (phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431158 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MVQVLSSADETYDNEQESGLALEDARLDN 30
           MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 319 MVQVLSSADETYDNEQESGLALEDARLDN 347

[Close]
BLAST of Carg26180 vs. ExPASy TrEMBL
Match: A0A6J1EBX4 (phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431158 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MVQVLSSADETYDNEQESGLALEDARLDN 30
           MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 353 MVQVLSSADETYDNEQESGLALEDARLDN 381

[Close]
BLAST of Carg26180 vs. ExPASy TrEMBL
Match: A0A6J1E9R7 (phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111431158 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-05
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MVQVLSSADETYDNEQESGLALEDARLDN 30
           MVQVLSSADETYDNEQESGLALEDARLDN
Sbjct: 264 MVQVLSSADETYDNEQESGLALEDARLDN 292

The following BLAST results are available for this feature:
BLAST of Carg26180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577690.12.4e-05100.00Phosphatidylinositol/phosphatidylcholine transfer protein SFH11, partial [Cucurb... [more]
XP_022923478.12.4e-05100.00phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X3 [Cucu... [more]
XP_022923476.12.4e-05100.00phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X2 [Cucu... [more]
XP_022923475.12.4e-05100.00phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X1 [Cucu... [more]
KAG7015731.12.4e-05100.00hypothetical protein SDJN02_23368, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26180 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E6W91.2e-05100.00phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X2 OS=Cu... [more]
A0A6J1EBX41.2e-05100.00phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X1 OS=Cu... [more]
A0A6J1E9R71.2e-05100.00phosphatidylinositol/phosphatidylcholine transfer protein SFH11 isoform X3 OS=Cu... [more]
BLAST of Carg26180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26180-RACarg26180-RAmRNA